BO33137.complete Sequence
946 bp assembled on 2012-08-22
GenBank Submission: KX795972
> BO33137.complete
GAAGTTATCAGTCGACATGTGGCATTGGAGTTTGTTGTGTGTTTTCCTAC
TTGTTCCGTTGGCGAATTCCACGGCTCCAATAAGTTTTGAGGCAAATCCG
GACACCAAACGTCTCTATGATGATTTGTTGAGCAACTACAATCGATTGAT
TAGGCCCGTTGTGAACAACACGGAGACCCTGACGGTTTGGTTAGGTCTGA
AATTGTCTCAGCTGATTGAGGTCAATCTGAAGAATCAGGTGATGACCACC
AATCTGTGGGTGAAGCAGCGCTGGTTCGACTACAAGTTGCGATGGGATCC
AGAGGAATACGGCGGAGTTGAACAGCTGTATGTGCCATCTGAGCACATTT
GGGTACCGGACATTGTGTTGTACAACAACTGGGATGGCAACTATGAAGTA
ACTCTGATGACGAAAGCCACTCTGAAGTATACGGGAGAAGTCTTTTGGGA
GCCACCTGCTATATACAAGTCATCCTGTGAGATGAATGTCGAATACTTTC
CGTACGACGAACAAATTTGCTTCATGAAATTCGGTTCATGGACCTACAAT
GGTGCCCAAGTGGATCTGAAGCATTTGGATCAGATTCCTGGCAGTAACCT
AGTGCAAGTTGGCATCGATCTCACGGAATTTTATTTGTCTGTGGAATGGG
ACATACTTGAAGTGCCGGCTACCAAAAATGAGGAGTATTACCCCGATACA
CTGGAACCCTTTTCAGATATCACATTTAAGTTGACCATGCGGCGTAAGAC
CTTGTTCTATACCGTTAATTTGATTGTGCCATGTGTGGCTTTAACATTCC
TCACGGTGTTGGTCTTTTATTTGCCCAGCGATTCGGGCGAAAAGGTAACA
AAGATGGATCCTCCAAATTCAATGATCAAAAATCTGAGAGTGATACCTTC
TTTTTTGTGGCACGTAGCATGTTTTTGTGCAAGCTTTCTAGACCAT
BO33137.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:16:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nAChRbeta2-RB | 915 | CG6798-PB | 1..912 | 17..928 | 4560 | 100 | Plus |
| nAChRbeta2-RA | 1560 | CG6798-PA | 1..830 | 17..846 | 4150 | 100 | Plus |
| nAChRalpha1-RC | 1704 | CG5610-PC | 178..522 | 209..553 | 375 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:16:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nAChRbeta2-RB | 4018 | CG6798-RB | 137..1048 | 17..928 | 4560 | 100 | Plus |
| nAChRbeta2-RA | 1892 | CG6798-RA | 137..966 | 17..846 | 4150 | 100 | Plus |
| nAChRalpha1-RC | 11027 | CG5610-RC | 1658..2002 | 209..553 | 375 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:16:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24513611..24513830 | 928..709 | 1085 | 99.5 | Minus |
| 3R | 32079331 | 3R | 24514494..24514688 | 268..74 | 975 | 100 | Minus |
| 3R | 32079331 | 3R | 24514067..24514252 | 583..398 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 24513880..24514016 | 716..580 | 685 | 100 | Minus |
| 3R | 32079331 | 3R | 24514308..24514440 | 399..267 | 665 | 100 | Minus |
| 3R | 32079331 | 3R | 24514913..24514970 | 74..17 | 290 | 100 | Minus |
| X | 23542271 | X | 8307006..8307172 | 378..212 | 265 | 77.2 | Minus |
| 3R | 32079331 | 3R | 24407324..24407494 | 553..383 | 225 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:16:24 has no hits.
BO33137.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:07:58 Download gff for
BO33137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAcRbeta-96A-RB | 132..1043 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:52 Download gff for
BO33137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAcRbeta-96A-RB | 137..1048 | 17..930 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:55 Download gff for
BO33137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nAChRbeta2-RB | 137..1048 | 17..930 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:55 Download gff for
BO33137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24513609..24513822 | 717..930 | 99 | <- | Minus |
| 3R | 24513880..24514012 | 584..716 | 100 | <- | Minus |
| 3R | 24514067..24514252 | 398..583 | 100 | <- | Minus |
| 3R | 24514310..24514438 | 269..397 | 100 | <- | Minus |
| 3R | 24514494..24514687 | 75..268 | 100 | <- | Minus |
| 3R | 24514913..24514970 | 17..74 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:52 Download gff for
BO33137.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20339331..20339544 | 717..930 | 99 | <- | Minus |
| arm_3R | 20339602..20339734 | 584..716 | 100 | <- | Minus |
| arm_3R | 20339789..20339974 | 398..583 | 100 | <- | Minus |
| arm_3R | 20340032..20340160 | 269..397 | 100 | <- | Minus |
| arm_3R | 20340216..20340409 | 75..268 | 100 | <- | Minus |
| arm_3R | 20340635..20340692 | 17..74 | 100 | | Minus |
BO33137.pep Sequence
Translation from 16 to 946
> BO33137.pep
MWHWSLLCVFLLVPLANSTAPISFEANPDTKRLYDDLLSNYNRLIRPVVN
NTETLTVWLGLKLSQLIEVNLKNQVMTTNLWVKQRWFDYKLRWDPEEYGG
VEQLYVPSEHIWVPDIVLYNNWDGNYEVTLMTKATLKYTGEVFWEPPAIY
KSSCEMNVEYFPYDEQICFMKFGSWTYNGAQVDLKHLDQIPGSNLVQVGI
DLTEFYLSVEWDILEVPATKNEEYYPDTLEPFSDITFKLTMRRKTLFYTV
NLIVPCVALTFLTVLVFYLPSDSGEKVTKMDPPNSMIKNLRVIPSFLWHV
ACFCASFLDH
BO33137.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nAChRbeta2-PB | 304 | CG6798-PB | 1..304 | 1..304 | 1656 | 100 | Plus |
| nAChRbeta2-PA | 519 | CG6798-PA | 1..278 | 1..278 | 1507 | 100 | Plus |
| nAChRalpha3-PC | 795 | CG2302-PC | 19..274 | 23..278 | 1068 | 73.8 | Plus |
| nAChRalpha3-PB | 795 | CG2302-PB | 19..274 | 23..278 | 1068 | 73.8 | Plus |
| nAChRalpha4-PG | 499 | CG12414-PG | 9..260 | 27..278 | 1029 | 72.2 | Plus |
