BO33145.complete Sequence
1402 bp assembled on 2012-08-22
GenBank Submission: KX793891
> BO33145.complete
GAAGTTATCAGTCGACATGTTAATCGGAGCTCGGCCCATACACAGAGTTT
ATGATGGCGTACATGGGTGGCCTAAACCACGTAGCCGAGCCCAGACATGT
TTCTGGGAGATCATCTCCGATGAGCATGGCATCGATGCCACCGGCGCCTA
CCACGGTGACAGCGACCTGCAGCTGGAGCGCATCAATGTGTACTACAATG
AGGCGTCCGGTGGCAAGTACGTGCCCCGCGCTGTCCTTGTCGATCTGGAG
CCCGGCACCATGGACTCTGTGCGATCGGGACCTTTCGGCCAGATCTTCAG
GCCCGACAACTTTGTGTTCGGCCAGTCGGGTGCCGGCAACAACTGGGCCA
AGGGTCATTACACAGAGGGTGCTGAGCTGGTGGACTCAGTGCTCGATGTT
GTCCGCAAGGAGGCCGAATCCTGCGACTGCCTGCAAGGCTTCCAACTCAC
ACACTCCCTTGGCGGCGGCACTGGCTCCGGTATGGGAACCCTGCTGATTT
CCAAGATCCGCGAGGAGTACCCCGACAGGATCATGAACACATACTCGGTT
GTGCCGTCGCCCAAGGTGTCGGACACCGTTGTGGAGCCCTACAACGCCAC
CCTGTCGGTGCACCAGCTGGTCGAGAACACGGACGAGACCTACTGCATCG
ACAACGAGGCTCTCTACGATATCTGCTTCCGCACCCTCAAGCTGACGACA
CCCACATACGGTGACCTGAACCATCTTGTCTCCCTGACCATGTCCGGCGT
AACCACCTGCCTCCGATTCCCCGGCCAACTGAACGCTGATCTCCGCAAGC
TGGCCGTCAACATGGTGCCCTTCCCACGTCTTCACTTCTTCATGCCCGGC
TTCGCTCCCCTGACCTCCCGAGGATCCCAGCAGTACCGCGCCCTCACCGT
GCCCGAGCTGACCCAGCAGATGTTCGATGCCAAGAACATGATGGCCGCCT
GCGACCCACGCCACGGACGCTACCTTACCGTCGCCGCCATCTTCCGTGGA
CGCATGTCCATGAAGGAGGTCGACGAGCAGATGCTGAACATCCAGAACAA
GAACAGCTCCTACTTCGTCGAATGGATCCCCAACAACGTGAAGACCGCCG
TGTGCGACATCCCGCCCCGTGGTCTGAAGATGTCCGCCACCTTCATCGGC
AACTCCACTGCCATCCAGGAGCTGTTCAAGCGCATCTCCGAGCAGTTCAC
CGCTATGTTCAGGCGCAAGGCTTTCTTGCATTGGTACACCGGCGAGGGCA
TGGACGAGATGGAGTTCACCGAGGCCGAGAGCAACATGAACGATCTGGTG
TCCGAGTACCAGCAGTACCAGGAGGCCACCGCCGACGAGGACGCCGAGTT
CGAGGAGGAGCAGGAGGCTGAGGTCGACGAGAACGCAAGCTTTCTAGACC
AT
BO33145.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:16:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub56D-RA | 1371 | CG9277-PA | 1..1368 | 17..1384 | 6840 | 100 | Plus |
| betaTub56D-RB | 1344 | CG9277-PB | 58..1341 | 101..1384 | 6420 | 100 | Plus |
| betaTub60D-RB | 1362 | CG3401-PB | 58..1310 | 101..1338 | 3560 | 85.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:16:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub56D-RA | 1701 | CG9277-RA | 190..1557 | 17..1384 | 6840 | 100 | Plus |
| betaTub56D-RB | 1596 | CG9277-RB | 169..1452 | 101..1384 | 6420 | 100 | Plus |
| betaTub60D-RB | 2515 | CG3401-RB | 259..1511 | 101..1338 | 3560 | 85.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:16:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19447463..19448746 | 1384..101 | 6420 | 100 | Minus |
| 2R | 25286936 | 2R | 24311194..24312095 | 437..1338 | 3010 | 88.9 | Plus |
| 3R | 32079331 | 3R | 9408684..9409600 | 1353..437 | 2605 | 85.6 | Minus |
| 3R | 32079331 | 3R | 27967268..27967592 | 1322..998 | 1100 | 89.2 | Minus |
| 3R | 32079331 | 3R | 27968929..27969185 | 996..740 | 805 | 87.5 | Minus |
| 3R | 32079331 | 3R | 9409679..9409995 | 417..101 | 730 | 82 | Minus |
| 3R | 32079331 | 3R | 27972919..27973151 | 567..335 | 565 | 82.8 | Minus |
| 2R | 25286936 | 2R | 24310905..24311136 | 204..435 | 545 | 82.3 | Plus |
| 3R | 32079331 | 3R | 27969656..27969829 | 737..564 | 465 | 84.5 | Minus |
| 2R | 25286936 | 2R | 19449327..19449410 | 100..17 | 420 | 100 | Minus |
| 3R | 32079331 | 3R | 27974107..27974342 | 336..101 | 355 | 76.7 | Minus |
| 3R | 32079331 | 3R | 27969439..27969535 | 677..581 | 215 | 81.4 | Minus |
| 2R | 25286936 | 2R | 24310722..24310832 | 101..211 | 210 | 79.3 | Plus |
| 3L | 28110227 | 3L | 6531600..6531723 | 732..855 | 200 | 77.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:16:30 has no hits.
BO33145.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:07:59 Download gff for
BO33145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RA | 167..1529 | 22..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:54 Download gff for
BO33145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RA | 195..1557 | 22..1386 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:00:57 Download gff for
BO33145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| betaTub56D-RA | 195..1557 | 22..1386 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:00:57 Download gff for
BO33145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19447461..19448746 | 101..1386 | 99 | <- | Minus |
| 2R | 19449327..19449405 | 22..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:54 Download gff for
BO33145.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15334966..15336251 | 101..1386 | 99 | <- | Minus |
| arm_2R | 15336832..15336910 | 22..100 | 100 | | Minus |
BO33145.pep Sequence
Translation from 16 to 1402
> BO33145.pep
MLIGARPIHRVYDGVHGWPKPRSRAQTCFWEIISDEHGIDATGAYHGDSD
LQLERINVYYNEASGGKYVPRAVLVDLEPGTMDSVRSGPFGQIFRPDNFV
FGQSGAGNNWAKGHYTEGAELVDSVLDVVRKEAESCDCLQGFQLTHSLGG
GTGSGMGTLLISKIREEYPDRIMNTYSVVPSPKVSDTVVEPYNATLSVHQ
LVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSLTMSGVTTCLR
FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGSQQYRALTVPELTQ
QMFDAKNMMAACDPRHGRYLTVAAIFRGRMSMKEVDEQMLNIQNKNSSYF
VEWIPNNVKTAVCDIPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRR
KAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQYQEATADEDAEFEEEQE
AEVDENASFLDH
BO33145.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| betaTub56D-PA | 456 | CG9277-PA | 1..456 | 1..456 | 2417 | 100 | Plus |
| betaTub56D-PB | 447 | CG9277-PB | 20..447 | 29..456 | 2257 | 100 | Plus |
| betaTub85D-PA | 446 | CG9359-PA | 20..446 | 29..455 | 2152 | 94.6 | Plus |
| betaTub60D-PB | 453 | CG3401-PB | 20..446 | 29..450 | 2073 | 90.6 | Plus |
| betaTub60D-PA | 454 | CG3401-PA | 20..447 | 29..450 | 2072 | 90.4 | Plus |
