BO33147.complete Sequence
1900 bp assembled on 2012-09-18
GenBank Submission: KX794087
> BO33147.complete
GAAGTTATCAGTCGACATGGCAAGCAGTGTTAGCAATTTGGCCAGCACAG
TGGCCACTGCCACGACTGCTACCTTGGAGGACCTCCACTTCAGCCTCACG
GACTACATAGTCTTCTCCCTGATGCTGAGCGCCTCGGCAGGAATTGGAGT
TTACTTCGGCTTCTTCTCGAAGGCCAAGAACACCACTGAAGAGTACCTGC
AGGGTGGAAAAAGGATGCCAACCCTTCCTGTAGCCATTTCCCTTGTCTCG
AGCCAGCTGTCTGGAGTGGCCATGATGTCCGTTCCGGCGGAGACTTACTC
CTTTGGATTCAATATGATCTTCGTGGTGTGGGCCATGGTCTTGTCTGTGC
CCGTTCTTATATATATCATTGTGCCCGTTTTCTACGATAATAATGTCTCC
AATTGCTACGAGTATCTTGAGTTGCGATTTAGCAAGCGCACACGACAATT
GGTGACCATCACCTTTATCCTCAACCAATTTCTGATGCTTCCCGTGTACA
TGTTTGTGCCCTCGCTGGCCTTTTCTCAAGTTACTGGATACAACATTCAT
CTGATTAACACGGTGGTCTCGTCCATCTGCGTTTTCTACACGATGCTTGG
CGGGATCAAGGCGGTTGTCTGGACAGATGTGGTCCAGGGAAGCGTTATGT
TGATCTCAGTTGTTCTAGTGGCCATTTTGGGTACCTCGAACACAGGAGGC
ATAACCAATGTCTTGGAAAACGCCGCTGAGGGGGGCCGTTTTGACTTTAG
TTTTGGCATCGATCCCCGCCTGCGCCTCACCTTCATCAGTGGAATGGCCA
GCGGCCTTCTGATGTGGACAGGTAAGCTTGGCCTTGACCAGAGCTGCGTC
CAGAGGATTGTGTCTTTGCCCTCGTATGGCCACGCCAAGAGGTGTCTGCT
TATGGCTGGCGTTGGCTTCCTACTCATCATGTCCTTTACCTGCTTCACCG
GAATCATCATGTTTGCCTACTACTACGGATGCGATCCCATTCAGGCTGGA
CTGGTCAGCAAGCCAGACAAGTTGATGCCGTTCTTCATCCAGGATATAAT
GGGTCACATGATGGGCATGCCCGGCGTCTTCATCTCCTGCGTTTTCAGTG
CCTCGCTGAGTTCCCTTTCTGCCAGTCTGAATTCCTTTGCCGGAGTGGTT
TACTTCGACTACATCAAGCCGCGAATCAATCACTCCGAAGCCAAAGCTAA
TGCAACTATGAAACTGGTGATTGTGGTCATGGGAGCGTACTGCATAGTGG
GCGGCTTCATCGTGCAGAACTTTAACTCCATTATTCAGACCATGTGGACG
ATTACCGGCATTAATATGGGCGCTGTCGTGGGAGTGTTTTGTCTGGGCAT
GTTTGTGCCGCGTTGCAATGCCAAGGTGGCGGTGAGTGGAATTGCCTTCA
GCTGCCTGGTGATGCTGTGGATCATCATCAATGGCCAGATGAACTTTAAG
GCTGGGCTGATTAAGTACGATCCCTTGCCTAATGGGCTGGACCAGTGCGA
GGCCAAGGGCTTCGAGGTCATCTTGAATGCGATAAGAAACAAGAATGTTA
CCAACGTTGGCACAACTGCGATTCCCTCGCTGGAAGCTCCCAAGGAACTT
ACCACCGCATTCGATAGCAATCGCGACTTTTCCATCTACGACACATCTTT
TTACTGGTACAAGGTCCTAGGTGCTCTTCTAGTCTTCGCGTGGGCCATTC
CCATGAGCTATGTGTGGCCCTTGGACAAGGAAGAAAAGCAGAACCCCAAG
CTCTACTCGCCATTCGTGCGTAGCATGTTGAACAAGCCAAGTCCAGTTTT
GGAGCTCGAGGAATTGCCTCTGAAGACGCCGCTTTCCGAAGAGCAAATCA
AGGAGAAGGAAAACGGCAGCGCAACAGAAGCTGCAAGCTTTCTAGACCAT
BO33147.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:14:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| salt-RB | 1869 | CG2196-PB | 1..1866 | 17..1882 | 9330 | 100 | Plus |
| salt-RC | 1866 | CG2196-PC | 1..1863 | 17..1882 | 9250 | 99.8 | Plus |
| CG2187-RB | 1872 | CG2187-PB | 931..1486 | 950..1505 | 800 | 76.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:14:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| salt-RB | 2114 | CG2196-RB | 88..1953 | 17..1882 | 9330 | 100 | Plus |
| salt-RC | 2111 | CG2196-RC | 88..1950 | 17..1882 | 9250 | 99.8 | Plus |
| CG2187-RB | 2021 | CG2187-RB | 1002..1557 | 950..1505 | 800 | 76.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:14:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31752398..31752930 | 1533..1001 | 2665 | 100 | Minus |
| 3R | 32079331 | 3R | 31751986..31752334 | 1882..1534 | 1745 | 100 | Minus |
| 3R | 32079331 | 3R | 31752990..31753245 | 1000..745 | 1280 | 100 | Minus |
| 3R | 32079331 | 3R | 31754383..31754618 | 252..17 | 1180 | 100 | Minus |
| 3R | 32079331 | 3R | 31753304..31753525 | 750..529 | 1110 | 100 | Minus |
| 3R | 32079331 | 3R | 31753850..31754011 | 412..251 | 810 | 100 | Minus |
| 3R | 32079331 | 3R | 31753592..31753711 | 530..411 | 600 | 100 | Minus |
| 3R | 32079331 | 3R | 31760197..31760387 | 1170..980 | 220 | 74.3 | Minus |
| 3R | 32079331 | 3R | 31757802..31757932 | 225..95 | 220 | 77.9 | Minus |
| 3R | 32079331 | 3R | 31756946..31757021 | 639..564 | 215 | 85.5 | Minus |
| 3R | 32079331 | 3R | 31761200..31761394 | 291..97 | 195 | 73.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:14:20 has no hits.
BO33147.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-18 16:29:53 Download gff for
BO33147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| salt-RB | 74..1939 | 17..1884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:35 Download gff for
BO33147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| salt-RB | 88..1953 | 17..1884 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:24:03 Download gff for
BO33147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| salt-RB | 88..1953 | 17..1884 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:24:03 Download gff for
BO33147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31754383..31754618 | 17..252 | 100 | | Minus |
| 3R | 31751984..31752334 | 1534..1884 | 99 | <- | Minus |
| 3R | 31752398..31752930 | 1001..1533 | 100 | <- | Minus |
| 3R | 31752990..31753239 | 751..1000 | 100 | <- | Minus |
| 3R | 31753304..31753523 | 531..750 | 100 | <- | Minus |
| 3R | 31753592..31753709 | 413..530 | 100 | <- | Minus |
| 3R | 31753850..31754009 | 253..412 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:35 Download gff for
BO33147.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27577706..27578056 | 1534..1884 | 99 | <- | Minus |
| arm_3R | 27578120..27578652 | 1001..1533 | 100 | <- | Minus |
| arm_3R | 27578712..27578961 | 751..1000 | 100 | <- | Minus |
| arm_3R | 27579026..27579245 | 531..750 | 100 | <- | Minus |
| arm_3R | 27579314..27579431 | 413..530 | 100 | <- | Minus |
| arm_3R | 27579572..27579731 | 253..412 | 100 | <- | Minus |
| arm_3R | 27580105..27580340 | 17..252 | 100 | | Minus |
BO33147.pep Sequence
Translation from 16 to 1900
> BO33147.pep
MASSVSNLASTVATATTATLEDLHFSLTDYIVFSLMLSASAGIGVYFGFF
SKAKNTTEEYLQGGKRMPTLPVAISLVSSQLSGVAMMSVPAETYSFGFNM
IFVVWAMVLSVPVLIYIIVPVFYDNNVSNCYEYLELRFSKRTRQLVTITF
ILNQFLMLPVYMFVPSLAFSQVTGYNIHLINTVVSSICVFYTMLGGIKAV
VWTDVVQGSVMLISVVLVAILGTSNTGGITNVLENAAEGGRFDFSFGIDP
RLRLTFISGMASGLLMWTGKLGLDQSCVQRIVSLPSYGHAKRCLLMAGVG
FLLIMSFTCFTGIIMFAYYYGCDPIQAGLVSKPDKLMPFFIQDIMGHMMG
MPGVFISCVFSASLSSLSASLNSFAGVVYFDYIKPRINHSEAKANATMKL
VIVVMGAYCIVGGFIVQNFNSIIQTMWTITGINMGAVVGVFCLGMFVPRC
NAKVAVSGIAFSCLVMLWIIINGQMNFKAGLIKYDPLPNGLDQCEAKGFE
VILNAIRNKNVTNVGTTAIPSLEAPKELTTAFDSNRDFSIYDTSFYWYKV
LGALLVFAWAIPMSYVWPLDKEEKQNPKLYSPFVRSMLNKPSPVLELEEL
PLKTPLSEEQIKEKENGSATEAASFLDH
BO33147.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| salt-PB | 622 | CG2196-PB | 1..622 | 1..622 | 3190 | 100 | Plus |
| salt-PC | 621 | CG2196-PC | 1..621 | 1..622 | 3173 | 99.8 | Plus |
| CG2187-PB | 623 | CG2187-PB | 2..622 | 3..621 | 2222 | 67.5 | Plus |
| CG2187-PA | 623 | CG2187-PA | 2..622 | 3..621 | 2222 | 67.5 | Plus |
| Smvt-PA | 591 | CG2191-PA | 1..588 | 5..605 | 1568 | 50.7 | Plus |
