BO33151.complete Sequence
1744 bp assembled on 2012-09-18
GenBank Submission: KX799165
> BO33151.complete
GAAGTTATCAGTCGACATGGAGTCCAATATATATTTAGTTTTTCTATTGA
CGTTTCTGCTGTACAATAATGCCAGAGCCGAAATCAGCGATCATCTGCGG
GAGGACATACCGGACTTAGACATGGAGCTCTCCTCCGCCTCATCCGCCCA
TCTCAATGGCAAGGAGCTACCGGCCGTGCCACAGAACTCGGTGCAGACGC
ATCCCAGATACAAATGCTACTCCTGCGAGCCGCCCTGTCGGGATCCCTAT
GAGTTTACCCACACCTGCCAGAATGCGATTCAGTGCTGGAAGTCGCGCAC
ACGCGATGCCGATGGTCAGGTGCAGGAGTCACGCGGCTGCAGCACCTCGC
CGGATCAACTGCCCATGATCTGCAGCCAGAACTCCTTGAAGATCAACGGG
CCCAGTAAACGAAATACGGGGAAGTTCGTGAATGTGGTCTGCTGTGCCGG
TGATTACTGCAATGAGGGAGACTTTCCGGAACTGCTGCCCTTCGACAGCA
ATGATGTGACGGTGATAACCGCGGATACCAGTAGCATAAGCAAGATGCTC
GTCGCCGTTCTGGGTCCTTTTCTGGTCATCGCTCTGCTGGGCGCCGTGAC
CATCTTCTTCATTCGTCGTAGCCATCGCAAGCGTCTGGCTGCCTCGCGAA
CCAAACAGGACCCGGAAGCGTATCTGGTCAATGATGAGCTGCTCCGCGCC
ACCAGCGCCGGGGACAGTACGCTGAGGGAGTATCTGCAGCACTCGGTGAC
CTCCGGCTCGGGCAGCGGATTGCCGCTGCTAGTGCAGCGTACGCTAGCCA
AACAGGTCACCCTGATCGAGTGCATTGGACGAGGCAAATACGGCGAGGTT
TGGCGCGGTCACTGGCATGGCGAAAGCATCGCCGTGAAGATATTCTTCAG
TCGCGACGAGGAGTCCTGGAAGCGGGAGACAGAGATATATAGCACCATAT
TGCTACGACATGAAAATATTCTGGGATTCATCGGCTCTGACATGACGTCG
CGGAACTCGTGCACCCAACTTTGGCTGATGACGCACTACTATCCACTGGG
CTCGCTCTTTGATCACCTAAACCGTAACGCCCTAAGCCACAACGATATGG
TATGGATTTGCCTGTCCATAGCTAATGGGCTGGTACACTTGCACACAGAG
ATATTCGGCAAGCAAGGCAAGCCAGCTATGGCCCACCGCGATTTGAAGTC
AAAGAATATACTGGTCACCTCGAACGGCTCCTGCGTGATAGCCGATTTTG
GACTGGCCGTTACCCATTCGCACGTCACAGGACAACTGGACCTGGGCAAC
AACCCCAAAGTGGGCACCAAGCGCTACATGGCCCCAGAGGTTCTTGATGA
AAGCATTGATTTAGAATGCTTCGAAGCACTACGCCGCACAGATATTTACG
CATTTGGACTTGTCCTCTGGGAGGTTTGTCGCCGCACCATTTCTTGCGGC
ATAGCAGAGGAGTACAAGGTGCCCTTCTACGATGTGGTGCCAATGGATCC
CAGCTTCGAGGATATGCGCAAGGTGGTCTGCATCGACAACTACAGGCCCT
CCATTCCCAATCGCTGGAGCTCGGATTCGTTAATGACTGGCATGTCCAAG
CTCATGAAGGAGTGCTGGCACCAAAACCCCGACGTGCGCTTGCCAGCGCT
GCGCATCAAAAAGACTATACATAAGCTGGCTTCCGCTGACGAGAAGATAC
GCCTGGACTTCGACGAGGTCTGCGTTGCAAGCTTTCTAGACCAT
BO33151.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sax-RA | 1713 | CG1891-PA | 1..1710 | 17..1726 | 8520 | 99.9 | Plus |
| sax-RB | 1608 | CG1891-PB | 1..1605 | 122..1726 | 7995 | 99.9 | Plus |
| sax-RC | 1749 | CG1891-PC | 226..1746 | 206..1726 | 7575 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:14:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sax-RA | 2415 | CG1891-RA | 55..1764 | 17..1726 | 8520 | 99.9 | Plus |
| sax-RB | 2716 | CG1891-RB | 417..2065 | 78..1726 | 8215 | 99.9 | Plus |
| sax-RC | 2451 | CG1891-RC | 280..1800 | 206..1726 | 7575 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:14:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7807705..7808366 | 281..942 | 3295 | 99.8 | Plus |
| 2R | 25286936 | 2R | 7808508..7808920 | 941..1353 | 2065 | 100 | Plus |
| 2R | 25286936 | 2R | 7808980..7809211 | 1352..1583 | 1130 | 99.1 | Plus |
| 2R | 25286936 | 2R | 7809269..7809416 | 1579..1726 | 740 | 100 | Plus |
| 2R | 25286936 | 2R | 7807070..7807201 | 76..207 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 7807566..7807644 | 205..283 | 395 | 100 | Plus |
| 2R | 25286936 | 2R | 7806538..7806598 | 17..77 | 305 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 13:14:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| opus | 7521 | opus OPUS 7521bp | 3516..3616 | 153..259 | 115 | 62 | Plus |
| Fw2 | 3961 | Fw2 FW2 3961bp | 1028..1072 | 1525..1568 | 114 | 75.6 | Plus |
BO33151.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-18 16:29:58 Download gff for
BO33151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RA | 61..1770 | 17..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:49 Download gff for
BO33151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RA | 55..1764 | 17..1728 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:24:20 Download gff for
BO33151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sax-RA | 55..1764 | 17..1728 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:24:20 Download gff for
BO33151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7807072..7807201 | 78..207 | 100 | -> | Plus |
| 2R | 7807569..7807644 | 208..283 | 100 | -> | Plus |
| 2R | 7806538..7806598 | 17..77 | 100 | -> | Plus |
| 2R | 7807708..7808366 | 284..942 | 99 | -> | Plus |
| 2R | 7808510..7808920 | 943..1353 | 100 | -> | Plus |
| 2R | 7808982..7809207 | 1354..1579 | 99 | -> | Plus |
| 2R | 7809270..7809416 | 1580..1728 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:49 Download gff for
BO33151.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3694043..3694103 | 17..77 | 100 | -> | Plus |
| arm_2R | 3694577..3694706 | 78..207 | 100 | -> | Plus |
| arm_2R | 3695074..3695149 | 208..283 | 100 | -> | Plus |
| arm_2R | 3695213..3695871 | 284..942 | 99 | -> | Plus |
| arm_2R | 3696015..3696425 | 943..1353 | 100 | -> | Plus |
| arm_2R | 3696487..3696712 | 1354..1579 | 99 | -> | Plus |
| arm_2R | 3696775..3696921 | 1580..1728 | 98 | | Plus |
BO33151.pep Sequence
Translation from 16 to 1744
> BO33151.pep
MESNIYLVFLLTFLLYNNARAEISDHLREDIPDLDMELSSASSAHLNGKE
LPAVPQNSVQTHPRYKCYSCEPPCRDPYEFTHTCQNAIQCWKSRTRDADG
QVQESRGCSTSPDQLPMICSQNSLKINGPSKRNTGKFVNVVCCAGDYCNE
GDFPELLPFDSNDVTVITADTSSISKMLVAVLGPFLVIALLGAVTIFFIR
RSHRKRLAASRTKQDPEAYLVNDELLRATSAGDSTLREYLQHSVTSGSGS
GLPLLVQRTLAKQVTLIECIGRGKYGEVWRGHWHGESIAVKIFFSRDEES
WKRETEIYSTILLRHENILGFIGSDMTSRNSCTQLWLMTHYYPLGSLFDH
LNRNALSHNDMVWICLSIANGLVHLHTEIFGKQGKPAMAHRDLKSKNILV
TSNGSCVIADFGLAVTHSHVTGQLDLGNNPKVGTKRYMAPEVLDESIDLE
CFEALRRTDIYAFGLVLWEVCRRTISCGIAEEYKVPFYDVVPMDPSFEDM
RKVVCIDNYRPSIPNRWSSDSLMTGMSKLMKECWHQNPDVRLPALRIKKT
IHKLASADEKIRLDFDEVCVASFLDH
BO33151.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sax-PA | 570 | CG1891-PA | 1..570 | 1..570 | 3030 | 100 | Plus |
| sax-PC | 582 | CG1891-PC | 1..582 | 1..570 | 3007 | 97.9 | Plus |
| sax-PB | 535 | CG1891-PB | 1..535 | 36..570 | 2852 | 100 | Plus |
| babo-PC | 595 | CG8224-PC | 123..594 | 55..562 | 1066 | 45.2 | Plus |
| babo-PA | 601 | CG8224-PA | 123..600 | 55..562 | 1052 | 44.1 | Plus |
