BO33155.complete Sequence
1747 bp assembled on 2012-08-22
GenBank Submission: KX799429
> BO33155.complete
GAAGTTATCAGTCGACATGTCTGCCTACGAGAAAATGCCGGCGAAGGCGC
CACGACGCCTCTCACCCATATGGTTTCTGGTGGTCACGTTTCTTCTCTTT
GCCACCACCTTAACGGCGCTGGCCGTGATCGAAGCTGGACGGGCACAGAG
CAACGCGGGCGGAGAAAGCGATCTCCTAATCCTTACGCGCATGTGGAATC
ATTTCAAGTCCGGTGCCGATAATGATACAGAAATTGCCACGGTGGAGCGA
ATTGCTAGGGATGCCGGAAATGCAAGCAATCCGAGTGCATCCGCATCGCA
GCAGGGCAGAAACTTCTACGAGGAGCAGCAGGCGGTGGTGGTGAATGCAG
AGAGCATGGATTCTCCCGTGTTGGGACAACGCCAGGATGCCTACGGTCCG
CCGCAGAGTCGCGAGGATTCCTACGAGCAGGATCCGTACTACGATGTGGC
CGATGACTACGGACCTGAACGATATCCCAGTGCAGAGTCCAAGCAGGAGT
CGGAAGAGGATGAGCGTTTCTATGATAAGGAATACACCGGTGAGGGCAGG
TCACAGCAGGCACGTCCCTACGATTCCTTCTACGCTCCGTGGTCATATAA
ACAGCAGCCAGCTCCAGTCGCTACTCATCCCGCTGCCGAGGGCAATAATA
GAAAGCTTCAGGCGTCTTTAGCTCCTAGCAGATCGCCTTATCCCGCCTAC
GATGAGATGTACGACTATCCCATGGGCTTCCAGCCGCGCCCACATCCGGA
AACAGCGATGGCCAAACAATCTCAGCCCACGTCCGACAATGCAGTAGTCC
AAATCCAAAGTGAATCCACACTGGTCACCGTGCTGAAGAGCCTCAAGCAG
ATCTGGGATCTGTATCAGGCACTGATGAGTGCCTGGAACGCGGTCAGCGA
ACGCCATCAGCAGAGCACTGAGAAGTTCCGCCAAGAGCAGGCGGCGAAGA
AAGCCGAGAAGGAGCAACTGCGTCAGCAGCAGCAGCAGAAGAACAGGATA
AACTCCAAAAAACCGCCGCGCATCGAGGGAAACAAAAAGAACCAGAACAA
GAGGCCGGCTACAACGACAACTAAGGCAACCACGACGACGACGACGACAG
CTGCTCCAGATGTCTCTGATGAGGAGGAGGAGGAAGCGGAGGAGGAGGAA
CAGTCGCAGAAGACAGTGGAGAAAGTTGAGACAGTCACACCATCGGCACC
CGCCACCAAAGTCTCGGCACTAAAGGGGGAAAAGGGAAATCTGAGATCGG
TGCGTGGACTGCGCCAAAGACGCGATGCCGAGGCGGAGGACAAGGCCGAC
ACGGATGTGGGCGAGGGTCGCTATATCAAGGGTGATCCTCTCAAAGGATA
CTACGATTTCGTCATCACGGAGGGCTCCTACAAGTTCTGGGCCGTCTTTC
AGGTGGGCACAGCACTGCTGATTATCTACTCGACGTTCGCTGCCATTTAC
TACTCCAAGGTGAATCCGCTGACCAGTGATTACGACTACACGGATTACCT
GGGTGGAGTTCGTTCGTTGTCCGGCGGAGATGCGGATTTCGTGGATGACG
GCGATGCAGCGACACCGCCCGTCTCGACCACCTCTCGTATCATGGAGTGG
CTGCCACGGACGGCGCATTCCATCCAGTTTATACTGGATGCCATCGACAA
GGTGCCAGTGGATCATGATAAGGACAAGGAGCTCGGCTGGTCCACGGCGC
AAAAGGACACGCCGGCGCTGGGAATGAGAGCAAGCTTTCTAGACCAT
BO33155.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:16:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6785-RC | 1716 | CG6785-PC | 1..1713 | 17..1729 | 8565 | 100 | Plus |
| CG6785-RB | 1716 | CG6785-PB | 1..1713 | 17..1729 | 8565 | 100 | Plus |
| CG6785-RA | 1716 | CG6785-PA | 1..1713 | 17..1729 | 8565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:16:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6785-RC | 1889 | CG6785-RC | 119..1831 | 17..1729 | 8565 | 100 | Plus |
| CG6785-RB | 2611 | CG6785-RB | 841..2553 | 17..1729 | 8565 | 100 | Plus |
| CG6785-RA | 3980 | CG6785-RA | 2210..3922 | 17..1729 | 8565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:16:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12041511..12042237 | 1405..679 | 3635 | 100 | Minus |
| 2L | 23513712 | 2L | 12042327..12042991 | 681..17 | 3325 | 100 | Minus |
| 2L | 23513712 | 2L | 12041112..12041440 | 1729..1401 | 1645 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:16:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2491 | 930..1108 | 205 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6924 | 904..1102 | 177 | 60.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6915 | 932..1108 | 175 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6883 | 946..1109 | 161 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6767..6968 | 895..1099 | 141 | 59.9 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3246..3328 | 929..1007 | 125 | 66.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1060..1161 | 955..1049 | 115 | 61.8 | Plus |
BO33155.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:00 Download gff for
BO33155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6785-RA | 2210..3922 | 17..1731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:40:57 Download gff for
BO33155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6785-RA | 2210..3922 | 17..1731 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:00 Download gff for
BO33155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6785-RA | 2210..3922 | 17..1731 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:00 Download gff for
BO33155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12041110..12041438 | 1403..1731 | 99 | <- | Minus |
| 2L | 12041514..12042234 | 682..1402 | 100 | <- | Minus |
| 2L | 12042327..12042991 | 17..681 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:40:57 Download gff for
BO33155.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12041110..12041438 | 1403..1731 | 99 | <- | Minus |
| arm_2L | 12041514..12042234 | 682..1402 | 100 | <- | Minus |
| arm_2L | 12042327..12042991 | 17..681 | 100 | | Minus |
BO33155.pep Sequence
Translation from 16 to 1747
> BO33155.pep
MSAYEKMPAKAPRRLSPIWFLVVTFLLFATTLTALAVIEAGRAQSNAGGE
SDLLILTRMWNHFKSGADNDTEIATVERIARDAGNASNPSASASQQGRNF
YEEQQAVVVNAESMDSPVLGQRQDAYGPPQSREDSYEQDPYYDVADDYGP
ERYPSAESKQESEEDERFYDKEYTGEGRSQQARPYDSFYAPWSYKQQPAP
VATHPAAEGNNRKLQASLAPSRSPYPAYDEMYDYPMGFQPRPHPETAMAK
QSQPTSDNAVVQIQSESTLVTVLKSLKQIWDLYQALMSAWNAVSERHQQS
TEKFRQEQAAKKAEKEQLRQQQQQKNRINSKKPPRIEGNKKNQNKRPATT
TTKATTTTTTTAAPDVSDEEEEEAEEEEQSQKTVEKVETVTPSAPATKVS
ALKGEKGNLRSVRGLRQRRDAEAEDKADTDVGEGRYIKGDPLKGYYDFVI
TEGSYKFWAVFQVGTALLIIYSTFAAIYYSKVNPLTSDYDYTDYLGGVRS
LSGGDADFVDDGDAATPPVSTTSRIMEWLPRTAHSIQFILDAIDKVPVDH
DKDKELGWSTAQKDTPALGMRASFLDH
BO33155.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6785-PC | 571 | CG6785-PC | 1..571 | 1..571 | 2965 | 100 | Plus |
| CG6785-PB | 571 | CG6785-PB | 1..571 | 1..571 | 2965 | 100 | Plus |
| CG6785-PA | 571 | CG6785-PA | 1..571 | 1..571 | 2965 | 100 | Plus |
