BO33162.complete Sequence
1663 bp assembled on 2012-09-18
GenBank Submission: KX795852
> BO33162.complete
GAAGTTATCAGTCGACATGTGGATTAGTAGCCGCTTCTTTGTGATTCTCC
TGCTGCTCAATCTGGATAACACCTGCAGTGAACCGTTCGAAGCCCACCTG
CGCGGTCCCGGATTCGTTATGGAGCCACCCGGTCGTGTGGAGTTTTCGAA
CTCCTCCGGCGGCTGGCTGGACTGCTCGGCCTCCGGAAGTCCGCAGCCGA
CGGTCGACTGGGTGCACGCGGATGGCTCGGCGGTGACCGAGATCCATGGA
GTGCGACGTGTCCTGCGTAACGGAACGCTCGTCCTGATGCCATTCGCCGC
GGCCGCCTACCACCAGGATGTGCACAACACGATCTATCGCTGTATTGCCA
GCAATTCGGTGGGTCGTATCGTCTCGCGGGACGTGCAAGTGAGGGCGGTT
GTGGCCCAGGCCTACAAAGTGGACGTAGAGGTGCTATCTGCCGCAAGGGG
ATGCACCGCCATTCTGCGCTGCGTGGTGCCCACGTTCGTCAAGGAATTGG
TACGAGTGGTCTCGTGGGTTCATGAACCCGCTATCTACATCTATCCCTCG
TTGCAAGGCGATGGCAAATTCCACTTGCTGCCCACCGGCGAGCTGCTCAT
CCACAATCTGCAGGAGAGCGATGAGTCGCAGTCCTTCCGCTGCCGCAGCA
TGCACCGCCTCACCCGTCAGGTGGTCGTCAGTTCACCCACCCGACTGCGT
ATTAATTCGCATCGCGGCATCATTTCGCCGAGCGTGGTGGAGCACACGGC
TCATGTGCAGGTGTCGCAGGACGAGGGCGCGGTGCTCCTGTGCGTCGCCC
AGGGCTGTCCTTCGCCCGAATACAGCTGGTTCACCCACAATGGAGCCGGA
CCCCTGCCCGTGCTGAGTGGCCCACGTGTCCGACTGCTTGGCCCCATCCT
GGCCATTGAGGCTGTGACTGGCGAGGATTCCGGCGTCTACAAGTGCACGG
CCGGCAATGTGGGCGGCGAAGCTAGTGCCGAGCTCCGGCTCACGGTGGCC
ACGCCCATCCAAGTGGAAATCTCACCGAACGTTCTCAGCGTTCACATGGG
CGGCACCGCGGAGTTCCGGTGCCTGGTCACCAGCAACGGCAGTCCCGTGG
GCATGCAGAACATCCTGTGGTACAAAGACGGCCGGCAGCTGCCCTCATCG
GGCCGCGTCGAGGACACCCTGGTTGTGCCTCGCGTGAGTCGCGAGAACCG
CGGTATGTACCAGTGCGTGGTGCGACGACCCGAAGGCGATACGTTCCAGG
CCACCGCCGAGCTGCAACTGGGTGATGCGCCGCCCGTGTTACTCTACAGC
TTTATCGAGCAGACCCTGCAGCCAGGACCAGCTGTAAGCCTCAAGTGCTC
CGCTGCCGGCAATCCTACGCCGCAAATTTCATGGACACTGGACGGATTTC
CGCTGCCATCAAACGGAAGATTTATGATCGGACAATACATCACCGTGCAT
GGCGATGTAATTAGTCATGTTAACATAAGCCACGTCATGGTCGAGGATGG
TGGCGAGTACGCCTGCATCGCGGAGAATCGGGCTGGACGAGTGCAGCATG
CGGCGCGCTTGAATATTTATGGTACGTTGTATTCACACACCCATGGCATG
CACTCAAAACATACAGATGCACATATGAGAAAAATGTTAATGGCTGCAAG
CTTTCTAGACCAT
BO33162.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dscam2-RE | 1632 | CG42256-PE | 1..1629 | 17..1645 | 8145 | 100 | Plus |
| Dscam2-RS | 6141 | CG42256-PS | 1..1557 | 17..1573 | 7785 | 100 | Plus |
| Dscam2-RR | 5904 | CG42256-PR | 1..1557 | 17..1573 | 7785 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:15:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dscam2-RE | 3476 | CG42256-RE | 615..2245 | 15..1645 | 8155 | 100 | Plus |
| Dscam2-RS | 8881 | CG42256-RS | 615..2173 | 15..1573 | 7795 | 100 | Plus |
| Dscam2-RR | 7573 | CG42256-RR | 615..2173 | 15..1573 | 7795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:15:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7180138..7180589 | 1274..823 | 2260 | 100 | Minus |
| 3L | 28110227 | 3L | 7183623..7183956 | 398..65 | 1670 | 100 | Minus |
| 3L | 28110227 | 3L | 7175351..7175578 | 1645..1418 | 1140 | 100 | Minus |
| 3L | 28110227 | 3L | 7183378..7183540 | 560..398 | 815 | 100 | Minus |
| 3L | 28110227 | 3L | 7182541..7182688 | 707..560 | 740 | 100 | Minus |
| 3L | 28110227 | 3L | 7179723..7179868 | 1419..1274 | 730 | 100 | Minus |
| 3L | 28110227 | 3L | 7182308..7182425 | 825..708 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 7189267..7189317 | 65..15 | 255 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:15:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 1252..1289 | 1602..1640 | 120 | 82.1 | Plus |
BO33162.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-18 16:30:02 Download gff for
BO33162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42256-RE | 603..2231 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:56 Download gff for
BO33162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dscam2-RE | 617..2245 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:24:34 Download gff for
BO33162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dscam2-RE | 617..2245 | 17..1647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:24:34 Download gff for
BO33162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7183623..7183955 | 66..398 | 100 | <- | Minus |
| 3L | 7189267..7189315 | 17..65 | 100 | | Minus |
| 3L | 7175349..7175576 | 1420..1647 | 99 | <- | Minus |
| 3L | 7179723..7179867 | 1275..1419 | 100 | <- | Minus |
| 3L | 7180138..7180586 | 826..1274 | 100 | <- | Minus |
| 3L | 7182308..7182425 | 708..825 | 100 | <- | Minus |
| 3L | 7182541..7182687 | 561..707 | 100 | <- | Minus |
| 3L | 7183378..7183539 | 399..560 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:56 Download gff for
BO33162.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7168449..7168676 | 1420..1647 | 99 | <- | Minus |
| arm_3L | 7172823..7172967 | 1275..1419 | 100 | <- | Minus |
| arm_3L | 7173238..7173686 | 826..1274 | 100 | <- | Minus |
| arm_3L | 7175408..7175525 | 708..825 | 100 | <- | Minus |
| arm_3L | 7175641..7175787 | 561..707 | 100 | <- | Minus |
| arm_3L | 7176478..7176639 | 399..560 | 100 | <- | Minus |
| arm_3L | 7176723..7177055 | 66..398 | 100 | <- | Minus |
| arm_3L | 7182367..7182415 | 17..65 | 100 | | Minus |
BO33162.pep Sequence
Translation from 16 to 1663
> BO33162.pep
MWISSRFFVILLLLNLDNTCSEPFEAHLRGPGFVMEPPGRVEFSNSSGGW
LDCSASGSPQPTVDWVHADGSAVTEIHGVRRVLRNGTLVLMPFAAAAYHQ
DVHNTIYRCIASNSVGRIVSRDVQVRAVVAQAYKVDVEVLSAARGCTAIL
RCVVPTFVKELVRVVSWVHEPAIYIYPSLQGDGKFHLLPTGELLIHNLQE
SDESQSFRCRSMHRLTRQVVVSSPTRLRINSHRGIISPSVVEHTAHVQVS
QDEGAVLLCVAQGCPSPEYSWFTHNGAGPLPVLSGPRVRLLGPILAIEAV
TGEDSGVYKCTAGNVGGEASAELRLTVATPIQVEISPNVLSVHMGGTAEF
RCLVTSNGSPVGMQNILWYKDGRQLPSSGRVEDTLVVPRVSRENRGMYQC
VVRRPEGDTFQATAELQLGDAPPVLLYSFIEQTLQPGPAVSLKCSAAGNP
TPQISWTLDGFPLPSNGRFMIGQYITVHGDVISHVNISHVMVEDGGEYAC
IAENRAGRVQHAARLNIYGTLYSHTHGMHSKHTDAHMRKMLMAASFLDH
BO33162.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dscam2-PE | 543 | CG42256-PE | 1..543 | 1..543 | 2852 | 100 | Plus |
| Dscam2-PS | 2046 | CG42256-PS | 1..522 | 1..522 | 2722 | 99.6 | Plus |
| Dscam2-PR | 1967 | CG42256-PR | 1..522 | 1..522 | 2722 | 99.6 | Plus |
| Dscam2-PQ | 1968 | CG42256-PQ | 1..522 | 1..522 | 2722 | 99.6 | Plus |
| Dscam2-PP | 2101 | CG42256-PP | 1..522 | 1..522 | 2722 | 99.6 | Plus |
| Dscam2-PR | 1967 | CG42256-PR | 240..703 | 34..517 | 296 | 24.1 | Plus |
| Dscam2-PR | 1967 | CG42256-PR | 442..901 | 51..517 | 200 | 21.8 | Plus |
| Dscam2-PS | 2046 | CG42256-PS | 539..741 | 257..456 | 185 | 28.1 | Plus |
| Dscam2-PQ | 1968 | CG42256-PQ | 539..741 | 257..456 | 185 | 28.1 | Plus |
| Dscam2-PS | 2046 | CG42256-PS | 442..902 | 51..517 | 176 | 22.1 | Plus |
| Dscam2-PQ | 1968 | CG42256-PQ | 442..902 | 51..517 | 176 | 22.1 | Plus |
| Dscam2-PS | 2046 | CG42256-PS | 385..601 | 295..514 | 167 | 29.2 | Plus |
| Dscam2-PQ | 1968 | CG42256-PQ | 385..601 | 295..514 | 167 | 29.2 | Plus |
