BO33163.complete Sequence
1894 bp assembled on 2012-09-18
GenBank Submission: KX799114
> BO33163.complete
GAAGTTATCAGTCGACATGTCACACATCCAATGCCTTTGGGTGTGTCTGG
GTTTTTTTATGCTACTCGTCGACTTCATTCAACCCATCGGCTTGAATGTT
TGTAACCGATCGCAGGTGGTTACTTACAAGAGATATGTCGAAAGGAGTAG
AGTGATACCATACCAGCATAGATCTTTCTGGAGTGGTTGGCAGACAAAAT
ACCGCACCGAGTATTATACAGACGAAGAGACTGCCTACAGGACCGTAATG
AGACCCAGTTGCTGTGAGGGCTACGAAGGATCCGTTGAGAACTGCAAACC
TGTCTGCAGACAACAGTGTCCTCAACATGGATTCTGCTCGTCCCCCAATA
CTTGCAGTTGCAATGCGGGCTACGGCGGTATCGACTGCCATCCCGTTTGC
CCAACGGTATGTGGAAAAAACGAGTTTTGCGATCGCCCCGGAGTCTGTAG
CTGCCAAAATGGCTACAAACGAACTTCTCCCAGCGACAATTGCCTTCCAG
TTTGCGAAAAGGAATGTGGACACCATAGCTTTTGCTCGGAGCCCGGGAAA
TGCGAATGTGAACCTGGGTACGAGAAAGTGGGAAACGGCACCGTCTTTCC
AGATGGATACAAGAACAATTCAAATGGCAATTGCTCGCCCATTTGCCCAA
AGGATTGTGGCCAAAACAGCCGATGTGTGAGGCCAGGTGTGTGCGAGTGT
GAAAATGGATATGCCGGTGACGACGGAGGCACCAATTGCCGACCCGTGTG
CTCCACTTGCCCGGAGAACGGATTATGCTTGAGTCCCGGCGTTTGTGTCT
GCAAGCCGGGCTACGTAATGAGAAATGATCTCTGCCAGCCGCATTGCGAA
AAGTGCTCGGATAACGCACACTGCGTGGCGCCCAACCAATGCGAGTGCTT
TCCGGGCTATGAGTCGTCGGGGGCGGACAAGAAGTGCGTACCCAAGTGCA
GCAAGGGATGTACCAACGGCTTTTGCTTTGCACCGGAGACTTGTGTTTGC
AGTATTGGCTATCAAATGGGTCCCAATCAAGTCTGTGAGCCAAAATGCAG
CCTAAACTGTGTTCATGGCAAGTGCACCAGTCCAGAAACCTGTACCTGCG
ATCCGGGTTATCGCTTCAAGGACAACTCCCATCACGAATGCGATCCTATT
TGCGACAGTGGCTGCAGCAACGGACACTGTGTGGCACCCAATTTTTGTAT
ATGCCACGATGGCTATCAGCTCAATAGCACAAATCCTGTCACTTCTATGT
GTCAGCCGATCTGCAAAGGCTGCCAATTCGGAGACTGTGTGGCACCGAAT
GTGTGCGAGTGCAACGTGGGCTATGAGAATATTAACGGACTATGCGAGTT
ACAAACCACGACGGACTCCTATGAATACAGCACCACAACTGTGGAGTTGC
AATCATCAACTGTAGACCCTCAACTGCAGACATCAACCAGCGAGGTTCCG
CACTCAAATTGCACTGCCGGTTGCATGTGCTGGATTGAATACGATGGGAT
GGGTACTTTCAATACAGCCAAGTGTGCCAAGATCTGTGTTGATCCCCAGG
ACAAGCCGTGCCTCAATTTGGACAATTGCCAATGCGATTTATCGAGTGGT
CAACTGGTGTGCCAAGAGGATAGTGACATGGATTACAGCGGGGAGAATTC
GCGATACGTTTGTCATATTTTGCCAGAGCAGGGGGCAAGATCAGAGGCTG
AGGTACGGATTCCTGACCGAACTGGATCGTCTAACAAGTGGATGATTATC
GTAGGCTCCTGCGCTGGAATGATCATTGGTGTGGCCGCCACAATCATTGG
CATAAAGTACTATCGACGTTCTACCTCTAGGCGAAATTTTGAAGCCGAAG
AAGCCATTGTTGAATGTGATTTTGAAGCAAGCTTTCTAGACCAT
BO33163.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:15:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimC1-RA | 1863 | CG8942-PA | 1..1860 | 17..1876 | 9300 | 100 | Plus |
| NimC1-RC | 1869 | CG8942-PC | 217..1866 | 227..1876 | 8250 | 100 | Plus |
| NimC1-RB | 1869 | CG8942-PB | 217..1866 | 227..1876 | 8250 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:15:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimC1-RA | 2054 | CG8942-RA | 81..1940 | 17..1876 | 9300 | 100 | Plus |
| NimC1-RC | 2999 | CG8942-RC | 275..1924 | 227..1876 | 8250 | 100 | Plus |
| NimC1-RB | 2038 | CG8942-RB | 275..1924 | 227..1876 | 8250 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:15:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13974233..13975881 | 1876..228 | 8245 | 100 | Minus |
| 2L | 23513712 | 2L | 13976477..13976689 | 229..17 | 1065 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:15:31 has no hits.
BO33163.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-18 16:30:02 Download gff for
BO33163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nimC1-RA | 65..1924 | 17..1878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:52:57 Download gff for
BO33163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimC1-RA | 81..1940 | 17..1878 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:24:36 Download gff for
BO33163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| NimC1-RA | 81..1940 | 17..1878 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:24:36 Download gff for
BO33163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13974231..13975879 | 230..1878 | 99 | <- | Minus |
| 2L | 13976477..13976689 | 17..229 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:52:57 Download gff for
BO33163.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13974231..13975879 | 230..1878 | 99 | <- | Minus |
| arm_2L | 13976477..13976689 | 17..229 | 100 | | Minus |
BO33163.pep Sequence
Translation from 16 to 1894
> BO33163.pep
MSHIQCLWVCLGFFMLLVDFIQPIGLNVCNRSQVVTYKRYVERSRVIPYQ
HRSFWSGWQTKYRTEYYTDEETAYRTVMRPSCCEGYEGSVENCKPVCRQQ
CPQHGFCSSPNTCSCNAGYGGIDCHPVCPTVCGKNEFCDRPGVCSCQNGY
KRTSPSDNCLPVCEKECGHHSFCSEPGKCECEPGYEKVGNGTVFPDGYKN
NSNGNCSPICPKDCGQNSRCVRPGVCECENGYAGDDGGTNCRPVCSTCPE
NGLCLSPGVCVCKPGYVMRNDLCQPHCEKCSDNAHCVAPNQCECFPGYES
SGADKKCVPKCSKGCTNGFCFAPETCVCSIGYQMGPNQVCEPKCSLNCVH
GKCTSPETCTCDPGYRFKDNSHHECDPICDSGCSNGHCVAPNFCICHDGY
QLNSTNPVTSMCQPICKGCQFGDCVAPNVCECNVGYENINGLCELQTTTD
SYEYSTTTVELQSSTVDPQLQTSTSEVPHSNCTAGCMCWIEYDGMGTFNT
AKCAKICVDPQDKPCLNLDNCQCDLSSGQLVCQEDSDMDYSGENSRYVCH
ILPEQGARSEAEVRIPDRTGSSNKWMIIVGSCAGMIIGVAATIIGIKYYR
RSTSRRNFEAEEAIVECDFEASFLDH
BO33163.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| NimC1-PA | 620 | CG8942-PA | 1..620 | 1..620 | 3607 | 100 | Plus |
| NimC1-PC | 622 | CG8942-PC | 9..622 | 3..620 | 3330 | 92.7 | Plus |
| NimC1-PB | 622 | CG8942-PB | 9..622 | 3..620 | 3330 | 92.7 | Plus |
| eater-PC | 1074 | CG6124-PC | 446..933 | 81..541 | 825 | 36.4 | Plus |
| eater-PC | 1074 | CG6124-PC | 282..621 | 81..441 | 807 | 43.2 | Plus |
| eater-PC | 1074 | CG6124-PC | 287..687 | 67..441 | 802 | 39.1 | Plus |
| eater-PC | 1074 | CG6124-PC | 36..452 | 77..437 | 720 | 35.3 | Plus |
| NimC2-PA | 648 | CG18146-PA | 162..559 | 93..521 | 716 | 35.7 | Plus |
| eater-PC | 1074 | CG6124-PC | 611..992 | 81..399 | 668 | 36.5 | Plus |
| eater-PC | 1074 | CG6124-PC | 40..294 | 180..443 | 496 | 36.3 | Plus |
| eater-PC | 1074 | CG6124-PC | 677..1012 | 81..351 | 476 | 33 | Plus |
| eater-PC | 1074 | CG6124-PC | 19..112 | 338..433 | 167 | 34.4 | Plus |
