BO33172.complete Sequence
1366 bp assembled on 2012-08-22
GenBank Submission: KX798123
> BO33172.complete
GAAGTTATCAGTCGACATGAGCTGGCTGATCTCAGCGGTGTTCCTCCTGC
TGTCCCTTTGTGCCTTCTCGATGGGCCAGGACACGATTTCGGCGATGTGC
CTCTCGGACGAACGGTGCACGTCTTTGAAGCGTTGCGAAGACTCGGATGA
TTCCGGTCGAAGGGGAATTAGGCCACGCAGCTCACGCATCTGCGGCACCC
AAAGGGTCTGCTGCGAGAAGGCCCAGCTGGACAGCTATGACAGATGGCTG
GTTGAGAGAACCACAACAGTGCCTTCAACAATTCGAAACAAGGTATCCAG
TGTCCTGGAACCGCCGCCGAACGAGAGCTGCGGACAGAACATGGAGTGTG
TACCCAGAAAGTTGTGCCGCGACAATATTATCAACGACTCGGGAATCAGC
CTGATCAATCCGAGGATTAGCCCGATTCAGTGCAGCAAGTCCTTGTACCG
CTGTTGCGCCGTAGATCAAAAGGTGGATGACAGCGAAAGTCCGTACTTGG
TGAAGCAGGCGAACTTTAAGTACAAGAACTGCGGCTACAGCAATCCAAAG
GGTCTAATACCCGACAACGACAAGTTCCCCTACTCGGAGGACGTCTCCAT
ATTCGGAGAGTTTCCTTGGATGGTGGGCATCTTCACTGGGCGCCAAGAGT
TTCTATGCGGCGGCACTCTCATCCATCCGCGGTTGGTAGTTACCACTTCG
CACAATCTGGTCAACGAGACGGTGGACACCTTGGTGGCCAGAGCTGGCGA
CTGGGATCTGAACAGCCTGAACGAGCCGTATCCGCACCAGGGCAGCCGTA
TTAAGGAGATCATCATGCACTCCGAATTCGATCCGAACTCGTTGTACAAC
GACATAGCACTATTGCTCCTGGACGAGCCCATCCGTCTCGCTCCACATAT
CCAGCCGCTGTGCTTGCCGCCTCCGGAATCTCCGGAGTTGACCAACCAGC
TGCTATCGGTCACCTGTTACGCCACTGGTTGGGGCACCAAGGAGGCGGGC
AGCGACAAGTTGGAGCATGTGCTCAAGCGGATCAACCTGCCACTGGTGGA
GCGAGAAGAGTGTCAGGCGAAGCTTCGGAACACACGGCTCGAGGCTCGCT
TCCGACTGCGACCGAGTTTCATCTGCGCCGGCGGAGATCCTGGCAAGGAC
ACCTGCAAGGGCGACGGCGGCTCACCGCTTTTCTGCCAAATGCCTGGCGA
AATGGATCGGTACCAGCTGGTGGGCATCGTGTCCTGGGGCGTCGAGTGCG
CCGTGGAAGACATTCCGGCGGTGTACGTCAACGTGCCCCATCTGCGCGGC
TGGATTGACGAGAAGATCAGAGGACTTGGAATCGTGCTGCAGGCGCAAGC
AAGCTTTCTAGACCAT
BO33172.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:18:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8586-RC | 1335 | CG8586-PC | 1..1332 | 17..1348 | 6660 | 100 | Plus |
| CG8586-RB | 1335 | CG8586-PB | 1..1332 | 17..1348 | 6660 | 100 | Plus |
| CG8586-RA | 1335 | CG8586-PA | 1..1332 | 17..1348 | 6660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:18:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8586-RC | 2473 | CG8586-RC | 100..1431 | 17..1348 | 6660 | 100 | Plus |
| CG8586-RB | 1625 | CG8586-RB | 195..1526 | 17..1348 | 6660 | 100 | Plus |
| CG8586-RA | 1530 | CG8586-RA | 100..1431 | 17..1348 | 6660 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 8693838..8694715 | 1348..471 | 4390 | 100 | Minus |
| 2R | 25286936 | 2R | 8694778..8695235 | 474..17 | 2290 | 100 | Minus |
| 2R | 25286936 | 2R | 8698316..8698424 | 1145..1253 | 275 | 83.5 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:18:00 has no hits.
BO33172.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:04 Download gff for
BO33172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8586-RA | 99..1430 | 17..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:12 Download gff for
BO33172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8586-RA | 100..1431 | 17..1350 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:25 Download gff for
BO33172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8586-RA | 100..1431 | 17..1350 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:25 Download gff for
BO33172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 8693836..8694713 | 473..1350 | 99 | <- | Minus |
| 2R | 8694780..8695235 | 17..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:12 Download gff for
BO33172.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4581341..4582218 | 473..1350 | 99 | <- | Minus |
| arm_2R | 4582285..4582740 | 17..472 | 100 | | Minus |
BO33172.pep Sequence
Translation from 16 to 1366
> BO33172.pep
MSWLISAVFLLLSLCAFSMGQDTISAMCLSDERCTSLKRCEDSDDSGRRG
IRPRSSRICGTQRVCCEKAQLDSYDRWLVERTTTVPSTIRNKVSSVLEPP
PNESCGQNMECVPRKLCRDNIINDSGISLINPRISPIQCSKSLYRCCAVD
QKVDDSESPYLVKQANFKYKNCGYSNPKGLIPDNDKFPYSEDVSIFGEFP
WMVGIFTGRQEFLCGGTLIHPRLVVTTSHNLVNETVDTLVARAGDWDLNS
LNEPYPHQGSRIKEIIMHSEFDPNSLYNDIALLLLDEPIRLAPHIQPLCL
PPPESPELTNQLLSVTCYATGWGTKEAGSDKLEHVLKRINLPLVEREECQ
AKLRNTRLEARFRLRPSFICAGGDPGKDTCKGDGGSPLFCQMPGEMDRYQ
LVGIVSWGVECAVEDIPAVYVNVPHLRGWIDEKIRGLGIVLQAQASFLDH
BO33172.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8586-PC | 444 | CG8586-PC | 1..444 | 1..444 | 2389 | 100 | Plus |
| CG8586-PB | 444 | CG8586-PB | 1..444 | 1..444 | 2389 | 100 | Plus |
| CG8586-PA | 444 | CG8586-PA | 1..444 | 1..444 | 2389 | 100 | Plus |
| CG8738-PA | 459 | CG8738-PA | 7..455 | 10..441 | 1046 | 45.4 | Plus |
| CG5390-PB | 406 | CG5390-PB | 69..395 | 103..435 | 667 | 40.5 | Plus |
