BO33173.complete Sequence
1240 bp assembled on 2012-08-22
GenBank Submission: KX794849
> BO33173.complete
GAAGTTATCAGTCGACATGAACTACAATCCAAATCCGGGTATGCGGAACC
GTAAGTGGGAGAACTCCTCAGCTGCCGGTCGCCCAAGGCCGCCGAAGCGT
GTGAGTGATGTTAACGCCATGGGACCCTCGGCTCCGATGATGGGCGGTGG
CGCCACCTTCATGGCCCCGCCCACCGGCCCCGGAATACTAGATCCCAATA
TGTACGGAGCACCTGCTCCGGCCCCGGTCAACAGCTATGGCTTCGACCCC
AATCTCGGCCAGCCCTCGCAGCACATTCAGCAGCCACCACAACAGCAGCC
CGGATACGGATATGGAGCACCACCTCCCCAACAGGCGGCTGGGCCACCCA
CCTACGGAATAGGAGCACCTCAGCCTGTAGCTCCACCCACTGGACAGTAC
CCACAGTTCGCCATGTTCCAGCAGCCCATCGTGCAAGACATGGCCATGCA
GTACGGTCAGAAACTAGCGGATCAGGGCAAGCAGATCATGGAGAATCAGT
TCGAGAAGTGGGTGCCCGTAGCCAAGCTCAAGTACTACTTCGCAGTGGAC
AACGCCTACGTGGGCAGGAAGTTGCGCCTTCTGTTTTTCCCCTATATGCA
TAAGGATTGGTCCCTGCGCTACGACCAAGAGCACCCAGTGCAACCACGAT
ATGATGTTAATGCGCCAGATCTCTATCTGCCCACCATGGGCTACATCACA
TACGTGATCGTAGCGGGTTTGCTTCTGGGCATGCAGAAGCGATTTTCGCC
GGAGCAGCTCGGCATTCAGGCCTCCAGCGCCATGGCATATAGCATTTTCG
AATTGGTCATTTACTCCCTAGCCCTGTACGTAATGAATGTGAAGACGAGC
CTGAAAACGCTTGATCTGCTGGCATTCACTGGTTATAAGTACGTTAATAT
AGTTGTCTGCCTGATGGTTAGCACGCTGTTCTTTAAGTCTGGATATTATA
TAGCACTGGCGTATACCAGTTTCTCCTTCGGTTTCTTCATGCTCCGCACG
TTGCGGACGAAACTGCTGCAGGACAACTCCCCGGCTGCGCCCAGTGGAGC
CATCAACTACGATCCGTATGGCAATCCACAGCAATTTGACTATAGCGGCG
GGAAAAAGCGCAAACTCTACTTCCTGTTCATGATCGTCGCGGGACAGGCG
CTGTTTGCCTTCCTGCTCTCCAAGCACCTGTATCTGCCCGAGGCGGAGGT
GCTGACGGTGCCCAAGACCTTCGCAAGCTTTCTAGACCAT
BO33173.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5484-RC | 1209 | CG5484-PC | 1..1206 | 17..1222 | 5985 | 99.8 | Plus |
| CG5484-RA | 1194 | CG5484-PA | 30..1191 | 61..1222 | 5750 | 99.7 | Plus |
| CG5484-RB | 1182 | CG5484-PB | 23..1179 | 66..1222 | 5740 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:19:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5484-RC | 1522 | CG5484-RC | 108..1313 | 17..1222 | 5985 | 99.8 | Plus |
| CG5484-RA | 1507 | CG5484-RA | 137..1298 | 61..1222 | 5750 | 99.7 | Plus |
| CG5484-RB | 1495 | CG5484-RB | 130..1286 | 66..1222 | 5740 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26718328..26718867 | 66..605 | 2685 | 99.8 | Plus |
| 3R | 32079331 | 3R | 26718920..26719308 | 603..991 | 1945 | 100 | Plus |
| 3R | 32079331 | 3R | 26719366..26719597 | 991..1222 | 1130 | 99.1 | Plus |
| 3R | 32079331 | 3R | 26717978..26718026 | 17..65 | 245 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:19:36 has no hits.
BO33173.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:08 Download gff for
BO33173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RC | 131..1336 | 17..1224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:31 Download gff for
BO33173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RC | 108..1313 | 17..1224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:01:55 Download gff for
BO33173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5484-RC | 108..1313 | 17..1224 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:01:55 Download gff for
BO33173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26717978..26718026 | 17..65 | 100 | -> | Plus |
| 3R | 26718328..26718866 | 66..604 | 99 | -> | Plus |
| 3R | 26718922..26719308 | 605..991 | 100 | -> | Plus |
| 3R | 26719367..26719597 | 992..1224 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:31 Download gff for
BO33173.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22543700..22543748 | 17..65 | 100 | -> | Plus |
| arm_3R | 22544050..22544588 | 66..604 | 99 | -> | Plus |
| arm_3R | 22544644..22545030 | 605..991 | 100 | -> | Plus |
| arm_3R | 22545089..22545319 | 992..1224 | 98 | | Plus |
BO33173.pep Sequence
Translation from 16 to 1240
> BO33173.pep
MNYNPNPGMRNRKWENSSAAGRPRPPKRVSDVNAMGPSAPMMGGGATFMA
PPTGPGILDPNMYGAPAPAPVNSYGFDPNLGQPSQHIQQPPQQQPGYGYG
APPPQQAAGPPTYGIGAPQPVAPPTGQYPQFAMFQQPIVQDMAMQYGQKL
ADQGKQIMENQFEKWVPVAKLKYYFAVDNAYVGRKLRLLFFPYMHKDWSL
RYDQEHPVQPRYDVNAPDLYLPTMGYITYVIVAGLLLGMQKRFSPEQLGI
QASSAMAYSIFELVIYSLALYVMNVKTSLKTLDLLAFTGYKYVNIVVCLM
VSTLFFKSGYYIALAYTSFSFGFFMLRTLRTKLLQDNSPAAPSGAINYDP
YGNPQQFDYSGGKKRKLYFLFMIVAGQALFAFLLSKHLYLPEAEVLTVPK
TFASFLDH
BO33173.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5484-PC | 402 | CG5484-PC | 1..402 | 1..402 | 2147 | 100 | Plus |
| CG5484-PA | 397 | CG5484-PA | 1..397 | 1..402 | 2094 | 98.5 | Plus |
| CG5484-PB | 393 | CG5484-PB | 1..393 | 1..402 | 2070 | 97.5 | Plus |
