BO33174.complete Sequence
1555 bp assembled on 2012-09-18
GenBank Submission: KX795126
> BO33174.complete
GAAGTTATCAGTCGACATGCATCTGCCAGCGGGTCCAACGATGGTGGCCA
ACAACACACAGGTCCTGGCCGCTGCCGCCGCCGCAGCAGCCGCCGCAGCG
GCCGCGGTAGCCCAGGGTCCTGGGCCGCAGCAGAGTAGCAATGCCACCAC
CGCCTCCGCAATCGCCATCAATCCCGCCCAGAGTCTGGCCAACACGAGCA
CCCACTCGGCCAGCAGCACGGGCAGCTCCACACCAGATCTCAGCACGAAC
AACACCAGCTCGAGCAGCAACGCCACCACCAGTCCGCAGAACTCCGCCAA
GATGCCCAGCTCGATGACCGACATGTTCGCCAGCCTGCACGAGATGCTGC
AGGAGTATCACGGCGAGCTGGCCCAGACCGGATCGCCCTCGATCCTCTGC
AGCGCCCTGCCCAATCACTGGCGGTCGAACAAGTCGCTGCCCGGAGCCTT
CAAGGTGATCGCCCTGGACGACGTGCCCGATGGCACCCTGGTGTCCATCA
AGTGCGGCAACGACGAAAACTACTGCGGCGAGCTGAGGAACTGCACCACG
ACCATGAAGAACCAGGTGGCCAAGTTCAACGATCTGCGCTTCGTGGGACG
ATCGGGACGCGGCAAGTCCTTCACGCTGACCATCACCATTGCCACCTATC
CGGTGCAGATCGCCAGCTACAGCAAAGCCATCAAGGTGACCGTCGACGGG
CCACGGGAGCCAAGAAGCTATGGCTATCCCCATCCCGGCGCGTTTAACCC
GTTCATGCTGAATCCCGCTTGGCTGGATGCGGCGTACATGACCTACGGCT
ATGCGGACTACTTCCGCCACCAGGCAGCCGCCCAGGCGGCCCAGGTGCAT
CATCCGGCACTGGCCAAGTCCTCGGCTTCCTCGGTGTCGCCAAATCCCAA
TCCATCGGTGGCCACCAGCTCCTCGTCGGCGGTTCAGCCATCTGAGTATC
CCCATCCGGCGGCAGCAGTGGCAGCGGCGGCGGGACAACCGGCGGCCATG
ATGCCATCGCCACCGGGAGCGGCGCCTGCCACGCCCTATGCCATTCCGCA
GTTCCCATTCAACCATGTGGCCGCCGCAGCCGCCGCCAAGGCAGCCACGC
CACACGCCTTCCATCCGTATAACTTTGCCGCGGCAGCTGGCTTGCGGGCC
CGCAATGCTGCCCTGCACCACCAGAGCGAGCCGGTCCACGTCAGCCCCGC
CTCCTCCAGGCCCTCCAGCTCCTCGCCCACCCAGCAACACGTCCTGCTGA
AGCTAAACACCTCCATCGAGACGAGCTCCATCCACGAGCAGTCCGCCAGT
GACGGCGACTCCGACGACGAGCAGATCGACGTGGTCAAATCGGAGTTCGA
CCTGGACAAGAGCCTGGATGTGGCGCCACTTCGCATGCGCTGCGACCTGA
AGGCGCCCTCGGCCATGAAGCCGCTCTACCACGAGAGCGGTCCTGGAGCG
GTAGCCAACAGCCGCCAGCCGTCGCCGGAAACGACCACCAAGATCAAGAG
CGCCGCCGTGCAGCAGAAGACCGTGTGGCGGCCCTACGCAAGCTTTCTAG
ACCAT
BO33174.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:15:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| run-RB | 1524 | CG1849-PB | 1..1521 | 17..1537 | 7605 | 100 | Plus |
| run-RC | 1533 | CG1849-PC | 1..1530 | 17..1537 | 7480 | 99.4 | Plus |
| run-RA | 1533 | CG1849-PA | 1..1530 | 17..1537 | 7480 | 99.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:15:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| run-RB | 2171 | CG1849-RB | 251..1775 | 13..1537 | 7610 | 99.9 | Plus |
| run-RC | 3145 | CG1849-RC | 922..2455 | 13..1537 | 7485 | 99.3 | Plus |
| run-RA | 2474 | CG1849-RA | 251..1784 | 13..1537 | 7485 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:15:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20695811..20696631 | 717..1537 | 4105 | 100 | Plus |
| X | 23542271 | X | 20694689..20695393 | 13..717 | 3510 | 99.9 | Plus |
| X | 23542271 | X | 9288353..9288560 | 393..600 | 290 | 76 | Plus |
| X | 23542271 | X | 20541938..20542030 | 505..597 | 210 | 81.7 | Plus |
| X | 23542271 | X | 20604130..20604203 | 579..506 | 190 | 83.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:15:38 has no hits.
BO33174.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-18 16:30:04 Download gff for
BO33174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| run-RB | 253..1773 | 17..1539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:01 Download gff for
BO33174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| run-RB | 253..1773 | 17..1539 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:24:39 Download gff for
BO33174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| run-RB | 255..1775 | 17..1539 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:24:39 Download gff for
BO33174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20694693..20695392 | 17..716 | 100 | -> | Plus |
| X | 20695811..20696631 | 717..1539 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:01 Download gff for
BO33174.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20565720..20566419 | 17..716 | 100 | -> | Plus |
| arm_X | 20566838..20567658 | 717..1539 | 99 | | Plus |
BO33174.pep Sequence
Translation from 16 to 1555
> BO33174.pep
MHLPAGPTMVANNTQVLAAAAAAAAAAAAAVAQGPGPQQSSNATTASAIA
INPAQSLANTSTHSASSTGSSTPDLSTNNTSSSSNATTSPQNSAKMPSSM
TDMFASLHEMLQEYHGELAQTGSPSILCSALPNHWRSNKSLPGAFKVIAL
DDVPDGTLVSIKCGNDENYCGELRNCTTTMKNQVAKFNDLRFVGRSGRGK
SFTLTITIATYPVQIASYSKAIKVTVDGPREPRSYGYPHPGAFNPFMLNP
AWLDAAYMTYGYADYFRHQAAAQAAQVHHPALAKSSASSVSPNPNPSVAT
SSSSAVQPSEYPHPAAAVAAAAGQPAAMMPSPPGAAPATPYAIPQFPFNH
VAAAAAAKAATPHAFHPYNFAAAAGLRARNAALHHQSEPVHVSPASSRPS
SSSPTQQHVLLKLNTSIETSSIHEQSASDGDSDDEQIDVVKSEFDLDKSL
DVAPLRMRCDLKAPSAMKPLYHESGPGAVANSRQPSPETTTKIKSAAVQQ
KTVWRPYASFLDH
BO33174.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| run-PB | 507 | CG1849-PB | 1..507 | 1..507 | 2615 | 100 | Plus |
| run-PC | 510 | CG1849-PC | 1..510 | 1..507 | 2601 | 99.4 | Plus |
| run-PA | 510 | CG1849-PA | 1..510 | 1..507 | 2601 | 99.4 | Plus |
| RunxB-PC | 663 | CG42267-PC | 34..370 | 38..308 | 576 | 41.1 | Plus |
| lz-PA | 826 | CG1689-PA | 189..583 | 10..401 | 573 | 38.7 | Plus |
