BO33175.complete Sequence
2536 bp assembled on 2012-09-18
GenBank Submission: KX794338
> BO33175.complete
GAAGTTATCAGTCGACATGTCCGCATCTAGATCGCGTAATAAACAATCCA
AACTTTGTGACGATGAGCGGCTCGATATAAGCAGGGACGAGTTCAACCGA
TTCCAGGAGGCCTTTGGCAAGGAGGAGTTCCGCAAGCTCTTCTTCGACTA
CGTGGATGAGATCCAGGATCCTGAGAACCGCAAGATCTACGAGTCAGAGA
TCACGCAGCTGGAGAAGGAGCGTGGCGTGGAGGTGAGGTTCATCCACCCG
AAGCCGGGATTCGTGATCAAGACCGCTCTAGATGGCGAGCTCAAGTGCTT
CATCAACATCGCTAGCTGTGAGGAGATCCAGAGGCCCAAAAATGAGGTGG
CCACGGATCCGTCGAGTGGTAGCCGGGGCCTGAGCTGGTCCATTCCGATG
GCCCAGACCACGTCGCGCGATGACTTCGATGCGAAAAACAACCACTGCAA
GGTGTTCGACGTCGTCTTCCATCCCGACGCCCTTCACCTGGCCATGCGGA
ACAAACAGTTCCGCCAATGCCTCATCGATACGGCACTGGACGCAATCGAA
CGCGAGTACAAGGTCTCGCTGGATCGCGCCAACCTCAAGTTCCCCAAGCT
GGACTACAAGGGTATTCCCCGTCCCACTGTGATACGCAAGATGGCCGATA
ATCCCACGGCCGAGGAGCAGGAGCCACATCCCCTGGCGCACATGTTCCCC
ACAAAGCCACCCGCTCCGGGGAAACAAGAGCCCCGTGTCCTGCCCATGAA
AACGAAGCCCTCTCCGGTGCCGGAGTTCACGGTGCCCAGGTATACGATCA
AGCACAGCCACGACGTGGACTTGTCCGAGTACACGGACGAGCTGGATGCC
AAGCTGCACGTGACCGTTCCTCGTTCTCTTGTCGTGGAGATCGAGCTCCC
CCTGCTCCGCTCGACAGCCGAGTGCCAGCTGGACGTCACCTCCAAGTCCA
TATACCTGTTCAGCGAGCGACAGGGCGCCAAGTACCGCCTGAAGCTGGAC
CTGCCCTTCATCGTGGACGACAAGGCGGGCCGGGCCCGCTTCGACACGGA
TATGCGTCGTTTGAGCATCACGTTACCTGTGGTCCGGAAGAGCATCCAGG
AGCAAGCCCAGATGCACGAAACCTTGCGCCACTTCAGCCGCGAGGACAGC
GGCGTGGAGCTGCACTCCAATAGCGAATCGCCGGTGGAGGAGGATCCCGA
TGGCGAACTCAGCGATTCCAAGGCGGATATTTCCGAGACTTCATCGCCCA
GTGTCGCACCTGCCAATAGCCCGTTCCTGAAGAGCTCCGTGCACTACCAG
CTGCCCAGCAAGTTCGACTGCAACGTGCTGGACAATGTGATGGCCTTTGT
GCTGCACGTGCCCAACGTTCAACCGGACTCCATTGAGCAGTTGAGGGAGC
AGCGGAGCCTGCACCTGAAGTTCGCCACCATCGGCAGTGGCTACTATCCC
ACCCACTACGCTTTCTACGTGGAACTGTCGGCGGAGCATGAGGATTCCTC
CATCGAGAGCGCGGAGGCAGAGGCCTGGGACAACAATGTGGTGCTCAAGC
TTTGTCTGAATTCGCAGAGCGAGACTCCGGCTAGCTACCTGGCCGGTCTA
GATGCCACGGAGCTCAAAGAGTACCCAGTTCATGGGCAGTACCATGTGAA
GAGCAAGGGAAAGGTTAACGCAAAGAAGGATAATGCTCCGCTCGATGTCA
AATTCGAGCGCAACCAGGAGGGCCATGCCCTGAAGGTTACCATTCGCCCC
GGAACAAAGGAGGAGGAGGAAGATAAGGAGAACCAAGACCAAGAGCCCGA
AAGCGATCAGCAGCAGCAGCAACAGGTGCAGAACAAGAAGCCCGGCAAGA
AGCAACGGAAGAAGAATAAGAAGGAGCGCTCCCTATCCGAATCTGCCTGC
GCAGATATGATCCTCCAGGAGCCACTGGCTAAAACTAATGAGCTTCAGCC
GAGGGCCACGTTTAAGTTGCCGCCGCAGCGCAAGCAACGCAGCTACTCGG
AGTGCAACGATAGCACTGGCCGCTCTCATCGCGGCATTCTCAAGCGTTTC
AGCCGCTACGGGCCCCGACCCTCGATGTCGGACAGCTGGTCGTCCATTGA
CGACTCCTCCTCGTACTCGTGCTCCGTGGATGCATCCGGAACATCGCTGT
TCTCTCAATCATTCGGCGGCATTCCCGAGGAGGACCGTTCGGATGCCGGG
CTCTCGGAGAGCTGCAAGAAGACTGTTAGATTTAACGATCACATTATGAA
GCAAGTGTTCCGACTCGACTCCAGCATCCTGGGTCAGCGCAAGAAGAACC
AGAAGCGACGCGATCTCAAGCTGCGGGCTCAGCAGCGTCGCCTCAGCGAG
GGCGATTCTGTCGACTACGAGGAAACCCGGGGCTCTGCCCTCAAGCAAGA
AGAAAATCCGTCAAGGAACTGCAACGATAGCGGATTGGATCTCACTGGAG
CAGCAGGTGCCCACAGCAACAACAATGAATCGGATGCTAAGAACACCATG
ATGTTTGAAATGGATGATGCAAGCTTTCTAGACCAT
BO33175.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:15:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop17l-RA | 2505 | CG1553-PA | 1..2502 | 17..2518 | 12495 | 100 | Plus |
| Nop17l-RB | 2505 | CG1553-PB | 1..2502 | 17..2518 | 12495 | 100 | Plus |
| Nop17l-RC | 2505 | CG1553-PC | 1..2502 | 17..2518 | 12495 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:15:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop17l-RA | 3525 | CG1553-RA | 363..2864 | 17..2518 | 12495 | 100 | Plus |
| Nop17l-RB | 3510 | CG1553-RB | 348..2849 | 17..2518 | 12495 | 100 | Plus |
| Nop17l-RC | 3831 | CG1553-RC | 669..3170 | 17..2518 | 12495 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:15:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7803512..7804736 | 1241..17 | 6110 | 99.9 | Minus |
| 2R | 25286936 | 2R | 7802181..7803201 | 2262..1242 | 5105 | 100 | Minus |
| 2R | 25286936 | 2R | 7801986..7802119 | 2395..2262 | 670 | 100 | Minus |
| 2R | 25286936 | 2R | 7801446..7801570 | 2518..2394 | 625 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:15:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6788..6914 | 1749..1877 | 162 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6741..6871 | 1758..1885 | 152 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6831 | 1753..1865 | 142 | 61.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6759..6881 | 1758..1877 | 139 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2421 | 1764..1877 | 129 | 61.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6818 | 1779..1877 | 128 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2353..2637 | 1758..2023 | 127 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2311..2415 | 1776..1877 | 120 | 62.3 | Plus |
BO33175.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-18 16:30:05 Download gff for
BO33175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1553-RA | 377..2878 | 17..2520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:53:02 Download gff for
BO33175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop17l-RC | 669..3170 | 17..2520 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:24:40 Download gff for
BO33175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Nop17l-RC | 669..3170 | 17..2520 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:24:40 Download gff for
BO33175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7801444..7801568 | 2396..2520 | 98 | <- | Minus |
| 2R | 7801986..7802118 | 2263..2395 | 100 | <- | Minus |
| 2R | 7802181..7803201 | 1242..2262 | 100 | <- | Minus |
| 2R | 7803512..7804736 | 17..1241 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:53:02 Download gff for
BO33175.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3688949..3689073 | 2396..2520 | 98 | <- | Minus |
| arm_2R | 3689491..3689623 | 2263..2395 | 100 | <- | Minus |
| arm_2R | 3689686..3690706 | 1242..2262 | 100 | <- | Minus |
| arm_2R | 3691017..3692241 | 17..1241 | 99 | | Minus |
BO33175.pep Sequence
Translation from 16 to 2536
> BO33175.pep
MSASRSRNKQSKLCDDERLDISRDEFNRFQEAFGKEEFRKLFFDYVDEIQ
DPENRKIYESEITQLEKERGVEVRFIHPKPGFVIKTALDGELKCFINIAS
CEEIQRPKNEVATDPSSGSRGLSWSIPMAQTTSRDDFDAKNNHCKVFDVV
FHPDALHLAMRNKQFRQCLIDTALDAIEREYKVSLDRANLKFPKLDYKGI
PRPTVIRKMADNPTAEEQEPHPLAHMFPTKPPAPGKQEPRVLPMKTKPSP
VPEFTVPRYTIKHSHDVDLSEYTDELDAKLHVTVPRSLVVEIELPLLRST
AECQLDVTSKSIYLFSERQGAKYRLKLDLPFIVDDKAGRARFDTDMRRLS
ITLPVVRKSIQEQAQMHETLRHFSREDSGVELHSNSESPVEEDPDGELSD
SKADISETSSPSVAPANSPFLKSSVHYQLPSKFDCNVLDNVMAFVLHVPN
VQPDSIEQLREQRSLHLKFATIGSGYYPTHYAFYVELSAEHEDSSIESAE
AEAWDNNVVLKLCLNSQSETPASYLAGLDATELKEYPVHGQYHVKSKGKV
NAKKDNAPLDVKFERNQEGHALKVTIRPGTKEEEEDKENQDQEPESDQQQ
QQQVQNKKPGKKQRKKNKKERSLSESACADMILQEPLAKTNELQPRATFK
LPPQRKQRSYSECNDSTGRSHRGILKRFSRYGPRPSMSDSWSSIDDSSSY
SCSVDASGTSLFSQSFGGIPEEDRSDAGLSESCKKTVRFNDHIMKQVFRL
DSSILGQRKKNQKRRDLKLRAQQRRLSEGDSVDYEETRGSALKQEENPSR
NCNDSGLDLTGAAGAHSNNNESDAKNTMMFEMDDASFLDH
BO33175.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Nop17l-PA | 834 | CG1553-PA | 1..834 | 1..834 | 4338 | 100 | Plus |
| Nop17l-PB | 834 | CG1553-PB | 1..834 | 1..834 | 4338 | 100 | Plus |
| Nop17l-PC | 834 | CG1553-PC | 1..834 | 1..834 | 4338 | 100 | Plus |
