BO33181.complete Sequence
1675 bp assembled on 2012-10-15
GenBank Submission: KX799422
> BO33181.complete
GAAGTTATCAGTCGACATGGCCAAGCCCCACTCGGATGCGGATGCCTCTG
GCCTGGGCTACGCCTACCAGCTGCCGTCCGGCGGCCTCCTGCTGCGCCTC
AAATCTTCCCTCTCACAGTTCAGCGATTTGTTCAGCGACTTCAGCAGGTA
CATCTCGCCCGCCTATCATCACGATCGCTGCGAGCGATCCGTCCATATGC
GACTCTACTCGATGCACAAGCGCGAGTTTGTCATGGTCTTCCTGGGATTC
TTCACCTGCTTCGGTCTGGGCATAGTCATCGGGCTGACGGGACCGCCCAT
AACCAGCACATCATCGCTGACCGCCCAGCAGATTCTGGCGAACACCTCGC
TGGCGCATAGCCCAACGGTCCTGGGGAAGGGACCCTTCGCCATGAAGTCG
CCGCTGACCACCACATATTCGCAGCAAATGTGGCTGATAGCCAAGCTGGT
GACGGACAACAATGATGACGAGCGGTACGACAAGAGTTTCCAAGTGAGCG
TCTCAATCGATGGCATAAACGAGCAGCACAAGCCCCAAAGTGTCCTCGGA
TCCGGAGTGGCTCACAACCGGACGCGGCACTTGGTCTGCGTACGGAACGA
CTGCGAGGAGTTCACGGTGATGCATCTGGGATTCCTCGACTATGCCCACT
ATATTATCACTGTGCGCTTTTACGGCTTGGAGTCATTCCATCAGAAGTAT
AATATACGCAGCATAACATTTTACTTCAAGACTTACAGTCCGGACTTCAC
GCAGATTGAAATCTGGTTTAGGTGCATCTTTCTGCTGTTCACCTTCATTG
TCATATGCTGGTATGCCCACACCTTGCGCAAGTATCCAATCTATGATTGG
TCCATTGAGCAGCGATGGTTGTCGGTACTCCTGCCCCTGCTCCTTTTGTA
CGACAATCCCTTCTTCCCGCTGATATTCCTGATGAACTCCTGGCTGCCTG
GAATGCTGGACGCCATTCTGCAAGCGACGTTCCTTTGTGCTCTACTCATG
TTTTGGCTGTGCATCTACCATGGACTGCGACAGAACGAGCGCAGCTTCGT
GCGATTTTACCTGGTCAAGGTGATCGTCGTCCTGCCCATTTGGCTGTGCG
CCATCGTTTTGGCCACGTGGGAGAAATGCAACGAGCTGAGGGATCCCACA
TACAGTCACTTTGTGGATACGAAAAACTACAATGGCTTCAAGATGTTCTT
CTACATCGCCTGCTGCATGTATGTGCTCTATCTGGTGCTGTTGCTACTGC
GGGCGTACACCGAGCTGCGCTCCATGCCGTACTTTGATATGCGCTTGAAG
TTTCTCACGCTGCTCATGCTGTTCGTCCTGTCCATATCCATCACGGTGAC
GACGTGTCGCTTTGGCTTCGGCATCCTGGAGGATAACTTTGTCGCCTCAC
TTAACACCACCTATCGCAGTTCGGCGCAGTTTATGTGCTTCTACGGACTG
CTTAACTTTTACCTGTACACCATGGCGTATGTGTACTCGCCAGATGGACG
GTTCGCCCAGGCGGAGCTGGCTGTCACCAAGGATAATCCGGCTATTTCCA
TGATCGACGATTCCGACGAGGATGTTGTCTACGGTTCCGACGAGGAGTCA
CGGCGACCGCTCACCTCTGTGGGCGGCGGTGCTGGAAAGAACGATTACGA
CAGCGATGCAAGCTTTCTAGACCAT
BO33181.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:37:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13409-RA | 1644 | CG13409-PA | 1..1641 | 17..1657 | 8205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:37:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13409-RA | 2087 | CG13409-RA | 177..1818 | 16..1657 | 8210 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:37:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22031273..22031724 | 467..16 | 2260 | 100 | Minus |
| 3R | 32079331 | 3R | 22029709..22030080 | 1657..1286 | 1860 | 100 | Minus |
| 3R | 32079331 | 3R | 22030305..22030583 | 1184..906 | 1395 | 100 | Minus |
| 3R | 32079331 | 3R | 22030950..22031207 | 724..467 | 1290 | 100 | Minus |
| 3R | 32079331 | 3R | 22030146..22030248 | 1286..1184 | 515 | 100 | Minus |
| 3R | 32079331 | 3R | 22030641..22030740 | 905..806 | 500 | 100 | Minus |
| 3R | 32079331 | 3R | 22030816..22030896 | 805..725 | 405 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:37:49 has no hits.
BO33181.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:05:11 Download gff for
BO33181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13409-RA | 188..1828 | 17..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:59 Download gff for
BO33181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13409-RA | 178..1818 | 17..1659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:08:20 Download gff for
BO33181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13409-RA | 178..1818 | 17..1659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:08:20 Download gff for
BO33181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22029706..22030079 | 1287..1659 | 99 | <- | Minus |
| 3R | 22030146..22030248 | 1184..1286 | 100 | <- | Minus |
| 3R | 22030306..22030583 | 906..1183 | 100 | <- | Minus |
| 3R | 22030641..22030740 | 806..905 | 100 | <- | Minus |
| 3R | 22030816..22030896 | 725..805 | 100 | <- | Minus |
| 3R | 22030950..22031206 | 468..724 | 100 | <- | Minus |
| 3R | 22031273..22031723 | 17..467 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:59 Download gff for
BO33181.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17855428..17855801 | 1287..1659 | 99 | <- | Minus |
| arm_3R | 17855868..17855970 | 1184..1286 | 100 | <- | Minus |
| arm_3R | 17856028..17856305 | 906..1183 | 100 | <- | Minus |
| arm_3R | 17856363..17856462 | 806..905 | 100 | <- | Minus |
| arm_3R | 17856538..17856618 | 725..805 | 100 | <- | Minus |
| arm_3R | 17856672..17856928 | 468..724 | 100 | <- | Minus |
| arm_3R | 17856995..17857445 | 17..467 | 100 | | Minus |
BO33181.pep Sequence
Translation from 16 to 1675
> BO33181.pep
MAKPHSDADASGLGYAYQLPSGGLLLRLKSSLSQFSDLFSDFSRYISPAY
HHDRCERSVHMRLYSMHKREFVMVFLGFFTCFGLGIVIGLTGPPITSTSS
LTAQQILANTSLAHSPTVLGKGPFAMKSPLTTTYSQQMWLIAKLVTDNND
DERYDKSFQVSVSIDGINEQHKPQSVLGSGVAHNRTRHLVCVRNDCEEFT
VMHLGFLDYAHYIITVRFYGLESFHQKYNIRSITFYFKTYSPDFTQIEIW
FRCIFLLFTFIVICWYAHTLRKYPIYDWSIEQRWLSVLLPLLLLYDNPFF
PLIFLMNSWLPGMLDAILQATFLCALLMFWLCIYHGLRQNERSFVRFYLV
KVIVVLPIWLCAIVLATWEKCNELRDPTYSHFVDTKNYNGFKMFFYIACC
MYVLYLVLLLLRAYTELRSMPYFDMRLKFLTLLMLFVLSISITVTTCRFG
FGILEDNFVASLNTTYRSSAQFMCFYGLLNFYLYTMAYVYSPDGRFAQAE
LAVTKDNPAISMIDDSDEDVVYGSDEESRRPLTSVGGGAGKNDYDSDASF
LDH
BO33181.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:57:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13409-PA | 547 | CG13409-PA | 1..547 | 1..547 | 2912 | 100 | Plus |
