BO33190.complete Sequence
2185 bp assembled on 2012-09-19
GenBank Submission: KX798090
> BO33190.complete
GAAGTTATCAGTCGACATGGCAAGTTCGCTCAACAAGACGAGACACAGGC
GCAGACTGGCTGCGATCTCGTTCCTATCGAATATCTCGTTAGATGGCACC
CATCGGGACACCAAATTCGGCGCAACATTCGGCAGCAGCCTGCTCTGCAA
CCAGAATAAGAACCCATCCTCGCTGGGACTCGGCTCGGGGGGCTTTCATC
CGCACTATCAGCAGCACCACCATCAGCGCAGCCACTCGGCGACGCACCAC
AACCACCAGAAGCGGCATCACACGCAGCAGCAGCAGCAACAGCAACAACA
GCAACACACCCAACAGCAGCAGCAGCAGCAGCAACATCAGCAGCAGCATC
AGCAGCAGCAGCAACACCAGAATGGCGCCCTCTGTTCGCCGCTCCTCTGC
AGCGCCGATGTCCACATGGGCATCGATGGCGGCATCGGGCTGGGATTGGG
ACTGGAGGACTGCACCACCGGTGCCAGCGATGGGGACGGGCATTTTAGTG
AAACTGAAAATATGGGTCAATACCTGATGAACGTCCTGCCGGCCGCCGAT
CACAATCGCAGCAGCATTGTGCCGGCCGAGAGACGCAACATAAAGCGCCC
GACCTCGTCGGGTCGTCATAACCACCAGGCACCGGGCAATGGCAATATGG
GCAATAAGCTCCAACAGCAGCAGCAGCAGCAGCACAAGTTGCAGCAGCAA
CAGCGGCAGGCACGAAGTTGCGCCGCCGGCAGCGGAGGATCGGGTGCCGA
GAGTGGCAGCGATTCGGACAGCGTCAAGATACCGCTCAAGGTGTCCAATC
TGGGCAGCGGCGGTGGCGTGGCCGGCGGAGCGGGCAGCAAGCTATTGCCG
CTGAGGGAACGCACCTTCAGCAATGGGGCAAGCGATCAGAACTTGCAGCC
GGAGCGGAGGGCACGTTTGAACACGGCGCCGGGTATGCGGGTGGGCTCCA
ATTCGAGCATTGCCATGGGCGGCGGTCTGAAGCGCACCTATGTCTTGAGT
GGATCGAGCGTTAGCCACATCACCGACGACAGCAGCACGGAGAGCCTGAC
TCCGGCGGGAAACTATGCGGGCAGTTTCCGGAACAGCCTCAGCAAGTCGG
TCCAGATCAGCGATAGCCGGCGTGGAACCTCCGGCCAGCCATTGGGACTT
GGACAGGCACGGGATGAGCGAATGGTGCTTGTGTCGCGCAAGATTCCGTT
CTTCATATTCTCTTCACTTCCCTATTACAAGGGCAAGAATGGAAGAGCTG
AGTTTCGCAAGGAGGATCGTCGTCGTCGGAATCCATCCACTTCGCGTCCT
TTGAGCTCGATCAACGATGCGCCATTCGATCCGTTTGATTTGCTGGGTAT
ACAGAAGGCCGAAAGTGGTCAGGACATATCATATGGTCACCTGCTGATAC
CTTCACGTCAGTACGAAAAGGAGCGCAAGAAGCATGGCAATGCATCGGCG
AATCCTTCCATCTTTGAGAACCAAATGGAGATCACGAGCACAGCGGCGCT
TAAGAATCATGGCATTGCGAGGTGCTTCACTTATGAGAACAACAATCGCA
ATAGTGCAACCAGTCCGACGCCAGACATGAAACTGGATATGGACATAGAG
AGTGTTATCCTGGGCGGAGACTCGTCGCGTGGTCAGGTGTACTCCGCTAG
CATTTTGGACGATCCGGAGTTGATTGCCGGAAAGCATCGCACGTTGCTTA
CCTTCACCTCTTACATGACCTCGGTCATTGACTATGTGCGTCCATCCGAT
CTTAAGAAGGAGCTGAACGATAAGTTTCGCGAGAAGTTCCCCACCATCCA
GCTCACACTGAGTAAGCTGAGGAGCATTAAGCGCGAAATGCGCCGAATCA
ACAAGTTGGACTCGCGCATCGATCTGGTGACCATATCGCAGGCGTACGTG
TACTTCGAGAAGCTCATCCTGGCCAATCTGATTAACAAGAGCAACCGCAA
GCTGTGCGCCGGCGCCTGTCTGCTGCTCAGCGCCAAGATGAATGACGTGA
AGGGTGACGCACTCAAGAGCCTCATCGAGAAGACGGAGAGCGTGTTCCGG
TTGAATCGCAAGGAGCTGATCTCGTCGGAGTTCGCTGTGCTTGTGGCTCT
GGAGTTTAGCCTGCATGTAAACCGGCACGAGGTCCTGCCACACTATCAGC
GGCTGCTCTACGAGTCCGCAAGCTTTCTAGACCAT
BO33190.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:03:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6191-RC | 2241 | CG6191-PC | 1..2151 | 17..2167 | 10755 | 100 | Plus |
| CG6191-RA | 2154 | CG6191-PA | 1..2151 | 17..2167 | 10755 | 100 | Plus |
| CG6191-RB | 2187 | CG6191-PB | 1..1505 | 17..1521 | 7525 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6191-RC | 3439 | CG6191-RC | 881..3031 | 17..2167 | 10755 | 100 | Plus |
| CG6191-RA | 3439 | CG6191-RA | 881..3031 | 17..2167 | 10755 | 100 | Plus |
| CG45088-RA | 3439 | CG45088-RA | 881..3031 | 17..2167 | 10755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:03:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13590600..13591444 | 861..17 | 4225 | 100 | Minus |
| 2R | 25286936 | 2R | 13583199..13583583 | 1245..861 | 1925 | 100 | Minus |
| 2R | 25286936 | 2R | 13580994..13581338 | 2167..1823 | 1725 | 100 | Minus |
| 2R | 25286936 | 2R | 13581494..13581679 | 1824..1639 | 930 | 100 | Minus |
| 2R | 25286936 | 2R | 13582797..13582950 | 1523..1370 | 770 | 100 | Minus |
| 2R | 25286936 | 2R | 13583006..13583135 | 1373..1244 | 650 | 100 | Minus |
| 2R | 25286936 | 2R | 13581749..13581868 | 1639..1520 | 600 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2289..2479 | 186..375 | 378 | 70.7 | Plus |
| R1A1-element | 5356 | R1A1-element DMRER1DM 5356bp Derived from X51968 (g8429) (Rel. 23, Last updated, Version 1). | 609..722 | 839..720 | 145 | 62 | Minus |
BO33190.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 11:11:52 Download gff for
BO33190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6191-RA | 878..3028 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:24 Download gff for
BO33190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6191-RA | 881..3031 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:15 Download gff for
BO33190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG45088-RA | 881..3031 | 17..2169 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:15 Download gff for
BO33190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13580992..13581336 | 1825..2169 | 99 | <- | Minus |
| 2R | 13581494..13581678 | 1640..1824 | 100 | <- | Minus |
| 2R | 13581749..13581866 | 1522..1639 | 100 | <- | Minus |
| 2R | 13582799..13582947 | 1373..1521 | 100 | <- | Minus |
| 2R | 13583007..13583133 | 1246..1372 | 100 | <- | Minus |
| 2R | 13583199..13583582 | 862..1245 | 100 | <- | Minus |
| 2R | 13590600..13591444 | 17..861 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:24 Download gff for
BO33190.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9470512..9470638 | 1246..1372 | 100 | <- | Minus |
| arm_2R | 9468497..9468841 | 1825..2169 | 99 | <- | Minus |
| arm_2R | 9468999..9469183 | 1640..1824 | 100 | <- | Minus |
| arm_2R | 9469254..9469371 | 1522..1639 | 100 | <- | Minus |
| arm_2R | 9470304..9470452 | 1373..1521 | 100 | <- | Minus |
| arm_2R | 9470704..9471087 | 862..1245 | 100 | <- | Minus |
| arm_2R | 9478105..9478949 | 17..861 | 100 | | Minus |
BO33190.pep Sequence
Translation from 16 to 2185
> BO33190.pep
MASSLNKTRHRRRLAAISFLSNISLDGTHRDTKFGATFGSSLLCNQNKNP
SSLGLGSGGFHPHYQQHHHQRSHSATHHNHQKRHHTQQQQQQQQQQHTQQ
QQQQQQHQQQHQQQQQHQNGALCSPLLCSADVHMGIDGGIGLGLGLEDCT
TGASDGDGHFSETENMGQYLMNVLPAADHNRSSIVPAERRNIKRPTSSGR
HNHQAPGNGNMGNKLQQQQQQQHKLQQQQRQARSCAAGSGGSGAESGSDS
DSVKIPLKVSNLGSGGGVAGGAGSKLLPLRERTFSNGASDQNLQPERRAR
LNTAPGMRVGSNSSIAMGGGLKRTYVLSGSSVSHITDDSSTESLTPAGNY
AGSFRNSLSKSVQISDSRRGTSGQPLGLGQARDERMVLVSRKIPFFIFSS
LPYYKGKNGRAEFRKEDRRRRNPSTSRPLSSINDAPFDPFDLLGIQKAES
GQDISYGHLLIPSRQYEKERKKHGNASANPSIFENQMEITSTAALKNHGI
ARCFTYENNNRNSATSPTPDMKLDMDIESVILGGDSSRGQVYSASILDDP
ELIAGKHRTLLTFTSYMTSVIDYVRPSDLKKELNDKFREKFPTIQLTLSK
LRSIKREMRRINKLDSRIDLVTISQAYVYFEKLILANLINKSNRKLCAGA
CLLLSAKMNDVKGDALKSLIEKTESVFRLNRKELISSEFAVLVALEFSLH
VNRHEVLPHYQRLLYESASFLDH
BO33190.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6191-PC | 746 | CG6191-PC | 1..717 | 1..717 | 3698 | 100 | Plus |
| CG6191-PA | 717 | CG6191-PA | 1..717 | 1..717 | 3698 | 100 | Plus |
| CG6191-PB | 728 | CG6191-PB | 1..728 | 1..717 | 3670 | 98.4 | Plus |
| Clk-PH | 895 | CG7391-PH | 647..846 | 61..234 | 196 | 34.3 | Plus |
| Clk-PG | 895 | CG7391-PG | 647..846 | 61..234 | 196 | 34.3 | Plus |
