BO33195.complete Sequence
1327 bp assembled on 2012-08-22
GenBank Submission: KX798773
> BO33195.complete
GAAGTTATCAGTCGACATGGCAACTGCAACCAGCGGCAGTGGACTCCATC
TGGAGGCCATCGATCGCATCGGCTCCATTCCCCTTGTGGAATCCAGTGTG
AAGCGGGTGGAGACCATCTACGATAAGGTGAAGAACAACAATAGGCTATT
CTCATGGTATTTTGAGACGGCGGAGGCCACCATTTCGGCCGCCTACGAAA
CCATCCAGCCGGCGGTCAAGCTCTTCGAGCCATCCATTCAGCGCCTGGAC
AACGTGATGTGCAAAAGCCTGGACATTCTGGAGCAGCGCATACCACTGGT
CTATCTGCCGCCCGAAATGATGTACTGGAACACCAAGGAGTACATGTCCG
ATCACCTGGTGCGTCCGGTTCTGAAACGCGCCGATTCTGTCAAGCAAATC
GGTAATGCTGTCCTCGAGAGTCCACTTACCACTTATGCAGCCGAGCGCAT
TGATGGCGCTTTCACAGTCGGCGATAAGTTCGTGGACAAGTACCTGGTGC
CCATCCAAACAGATCAGGATCAGACCGATGTGAAAAAATTGGTTTCGGCC
CTGAATGATAACTTTTCGCCGATTCGACAACAATTAAACCGAATGTTTGG
CCACAAAAGCCCACAGGAGGATGATAACGAGGCCGTGCCGGACGAGAGGG
GCGCCATCAAGGCGATCCATCATGGTCAACGCTTCTCCCGCAAACTGAAG
CGCCGCCTTACCCAAAGAACCATCGCAGAGGCTCGCGCCCTCAAAAAGCA
GAGCAAGGAGGCGATCCACGTGCTCTTCTATGCCGCAGAATTGATTGCCA
CCGATCCCAAGCAGGCCGTTCAAAAGGCCAAGGAACTGTGGGTCTATCTC
AGTGCAGATGAACCCGAAAATCAAGCGAGGCCCGCCACTCTGGAGCAGTT
GATTGTGCTACTGACCCGCGAATCGGCTAGGCGTGTGGTTCATCTAGTGA
ACTTCAGTGCTCATGTGGCAGCCAACATACCCAGAAACCTGGCGCACACG
ACAACAGAGGTTGCCCACCATATTATCTATATCAACCACCGCATCATCAC
AATCTCACGGCTGGACAAGGTTAAAACCATCTCCAAAGAGGAAGCTGAAT
CTCTTTTCAAGCGCATGCTGGCGTTCTATGGTAGCCTTCAGGGCCTGACC
AATGCCTACCTGGAGCGCGTGGCCAGCTTTCTATCCGGACGCATGGAGGC
CGAGAAGGTGACGGGCAGCGATGGCGGCAATTCCAACCACCGGTCATCGC
GGAGGAGGCAGGATCCGAACCATTATTCAGCCACCCACAATAACATCAAC
GGCGTCTACGCAAGCTTTCTAGACCAT
BO33195.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:20:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsd-1-RA | 1296 | CG10374-PA | 1..1293 | 17..1309 | 6465 | 100 | Plus |
| Lsd-1-RD | 1218 | CG10374-PD | 515..1215 | 609..1309 | 3505 | 100 | Plus |
| Lsd-1-RB | 978 | CG10374-PB | 275..975 | 609..1309 | 3505 | 100 | Plus |
| Lsd-1-RD | 1218 | CG10374-PD | 1..514 | 17..530 | 2570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:20:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsd-1-RA | 1510 | CG10374-RA | 76..1368 | 17..1309 | 6465 | 100 | Plus |
| Lsd-1-RD | 1432 | CG10374-RD | 590..1290 | 609..1309 | 3505 | 100 | Plus |
| Lsd-1-RB | 1501 | CG10374-RB | 659..1359 | 609..1309 | 3505 | 100 | Plus |
| Lsd-1-RD | 1432 | CG10374-RD | 76..589 | 17..530 | 2570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:20:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23764385..23764684 | 20..319 | 1500 | 100 | Plus |
| 3R | 32079331 | 3R | 23764748..23764959 | 319..530 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 23765875..23766066 | 793..984 | 960 | 100 | Plus |
| 3R | 32079331 | 3R | 23765512..23765696 | 609..793 | 925 | 100 | Plus |
| 3R | 32079331 | 3R | 23766127..23766308 | 982..1163 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 23766373..23766520 | 1162..1309 | 740 | 100 | Plus |
| 3R | 32079331 | 3R | 23765100..23765179 | 530..609 | 400 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:20:22 has no hits.
BO33195.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:11 Download gff for
BO33195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-1-RA | 457..1749 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:45 Download gff for
BO33195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-1-RA | 76..1368 | 17..1311 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:11 Download gff for
BO33195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Lsd-1-RA | 76..1368 | 17..1311 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:11 Download gff for
BO33195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23764384..23764684 | 17..319 | 99 | -> | Plus |
| 3R | 23764749..23764959 | 320..530 | 100 | -> | Plus |
| 3R | 23765101..23765178 | 531..608 | 100 | -> | Plus |
| 3R | 23765512..23765696 | 609..793 | 100 | -> | Plus |
| 3R | 23765876..23766066 | 794..984 | 100 | -> | Plus |
| 3R | 23766130..23766307 | 985..1162 | 100 | -> | Plus |
| 3R | 23766374..23766520 | 1163..1311 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:45 Download gff for
BO33195.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19590106..19590406 | 17..319 | 99 | -> | Plus |
| arm_3R | 19590471..19590681 | 320..530 | 100 | -> | Plus |
| arm_3R | 19590823..19590900 | 531..608 | 100 | -> | Plus |
| arm_3R | 19591234..19591418 | 609..793 | 100 | -> | Plus |
| arm_3R | 19591598..19591788 | 794..984 | 100 | -> | Plus |
| arm_3R | 19591852..19592029 | 985..1162 | 100 | -> | Plus |
| arm_3R | 19592096..19592242 | 1163..1311 | 98 | | Plus |
BO33195.pep Sequence
Translation from 16 to 1327
> BO33195.pep
MATATSGSGLHLEAIDRIGSIPLVESSVKRVETIYDKVKNNNRLFSWYFE
TAEATISAAYETIQPAVKLFEPSIQRLDNVMCKSLDILEQRIPLVYLPPE
MMYWNTKEYMSDHLVRPVLKRADSVKQIGNAVLESPLTTYAAERIDGAFT
VGDKFVDKYLVPIQTDQDQTDVKKLVSALNDNFSPIRQQLNRMFGHKSPQ
EDDNEAVPDERGAIKAIHHGQRFSRKLKRRLTQRTIAEARALKKQSKEAI
HVLFYAAELIATDPKQAVQKAKELWVYLSADEPENQARPATLEQLIVLLT
RESARRVVHLVNFSAHVAANIPRNLAHTTTEVAHHIIYINHRIITISRLD
KVKTISKEEAESLFKRMLAFYGSLQGLTNAYLERVASFLSGRMEAEKVTG
SDGGNSNHRSSRRRQDPNHYSATHNNINGVYASFLDH
BO33195.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Lsd-1-PA | 431 | CG10374-PA | 1..431 | 1..431 | 2190 | 100 | Plus |
| Lsd-1-PD | 405 | CG10374-PD | 1..405 | 1..431 | 2016 | 93.7 | Plus |
| Lsd-1-PC | 405 | CG10374-PC | 1..405 | 1..431 | 2016 | 93.7 | Plus |
| Lsd-1-PB | 325 | CG10374-PB | 1..325 | 81..431 | 1617 | 92.3 | Plus |
| Lsd-2-PA | 352 | CG9057-PA | 36..268 | 11..244 | 193 | 22.9 | Plus |
