BO33196.complete Sequence
1195 bp assembled on 2012-08-22
GenBank Submission: KX799700
> BO33196.complete
GAAGTTATCAGTCGACATGACGCAGCTAGAGATTTCCAAGAAGTCGGAAA
AACCAGCGGAAAAACCGGCGGAGCAATGGGGAAATGGACTCGAATTTCTT
TTCTCCTGCATTTCATTATCCGTGGGATTGGGGAATATCTGGCGTTTTCC
CTACATTGCCTTCCAGAATGGCGGCGGTACCTTTGTGATACCGTACCTGA
TTGCCCTCCTGGTAATTGGACGGCCTGTCTACTATCTGGAGATATCCCTG
GGCCAGTTCACGGGTCGCGGCGTGGTCAAGGCCTTCGATATGGCTCCCCT
GCTCAAGGGCGTGGCATTGGGTCAAGTCCTGGCCACAGCCGCCTCCATCA
CATACTACTCCAGCATTATGGCTTTGACTCTACGATTCTGGCTGGCCTCC
TTCGGCTCCGAGCTGCCATGGAGCAGGTGCTGGGAGAGCTGGGGCACCGA
TTGCCACGACGGCAATGCTCAAAATAGCAGTGGAAAAATGTCACCGGCAC
AGCTGTACTTTGAACGTGAGATCCTTCATGAGGTGCCCAACATAGACAAC
GGACTGAGTCTGCCCAACTGGCAACTGGTGGCCTGTTTGGCGATTGCTTG
GCTGGTCATCGGAGGAGTCCTCATTCGCGGCATTAAGAGCAGTGGCAAGG
CGGCCTATTTCCTGGGCGTATTTCCCTATGTGGTGCTGCTCATCCTGCTC
TTGAGAGCCGTTACCCTGCCAGGAGCCATCGATGGCATTATATACTTCTT
CAAGCCACAGTGGCGAGAGCTGCTGAATCCACTCGTTTGGTATGCAGCCG
TAACACAGGTCTTCTTTTCCCTGGCCATCTGTTTCGGCACTTTGATCACC
TATGCCAGCTACAACAACTTCAACCGCAACGTATACAATGACATTGTGAT
AATCACCACCATGGACTCCTGTTCATCCATAATTGCTGGCTGCATTACCT
TTGGAATTCTGGGCAATCTGGCACGCGAGACTGGCAACCCGGATATTGGC
AGTGTGGTGAAGGGCGGCGCGGGATTGGCCTTCATCTCGTATCCGGAGGC
CATTGCCAAGTTCGAGTATGTGCCACAGGCATTGGCAGCACCGTGGGCAT
GGGATCATGCATCCTGCGCGTCATTCGGGATCAATTCGGATTACGCTCCC
CGCCCATTTGGAAACTGGCCAGCGGCCGCAAGCTTTCTAGACCAT
BO33196.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:20:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| List-RC | 1164 | CG15088-PC | 1..1161 | 17..1177 | 5805 | 100 | Plus |
| List-RD | 1695 | CG15088-PD | 1..1062 | 17..1078 | 5310 | 100 | Plus |
| List-RD | 1695 | CG15088-PD | 1101..1201 | 1077..1177 | 505 | 100 | Plus |
| CG8850-RA | 1851 | CG8850-PA | 734..1148 | 654..1068 | 320 | 71.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| List-RC | 1827 | CG15088-RC | 38..1203 | 12..1177 | 5815 | 99.9 | Plus |
| List-RD | 1867 | CG15088-RD | 38..1104 | 12..1078 | 5320 | 99.9 | Plus |
| List-RD | 1867 | CG15088-RD | 1143..1243 | 1077..1177 | 505 | 100 | Plus |
| CG8850-RA | 2086 | CG8850-RA | 831..1245 | 654..1068 | 320 | 71.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18729743..18730244 | 513..12 | 2495 | 99.8 | Minus |
| 2R | 25286936 | 2R | 18729170..18729544 | 888..514 | 1875 | 100 | Minus |
| 2R | 25286936 | 2R | 18728842..18729036 | 1079..885 | 960 | 99.5 | Minus |
| 2R | 25286936 | 2R | 18728648..18728748 | 1177..1077 | 505 | 100 | Minus |
| 3L | 28110227 | 3L | 9214051..9214170 | 944..1063 | 255 | 80.8 | Plus |
| 2L | 23513712 | 2L | 14845931..14846001 | 1077..1007 | 235 | 88.7 | Minus |
| 2R | 25286936 | 2R | 12300721..12300861 | 241..101 | 210 | 76.6 | Minus |
| 2R | 25286936 | 2R | 12299984..12300167 | 837..654 | 200 | 73.9 | Minus |
Blast to na_te.dros performed 2014-11-28 12:20:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2437..2495 | 854..912 | 115 | 66.1 | Plus |
BO33196.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:12 Download gff for
BO33196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15088-RC | 20..1180 | 17..1179 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:49 Download gff for
BO33196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| List-RD | 43..1106 | 17..1078 | 99 | -> | Plus |
| List-RD | 1145..1243 | 1079..1179 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:15 Download gff for
BO33196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| List-RC | 43..1203 | 17..1179 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:15 Download gff for
BO33196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18728644..18728746 | 1079..1179 | 98 | <- | Minus |
| 2R | 18728843..18729032 | 889..1078 | 100 | <- | Minus |
| 2R | 18729170..18729544 | 514..888 | 100 | <- | Minus |
| 2R | 18729743..18730239 | 17..513 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:49 Download gff for
BO33196.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14616149..14616251 | 1079..1179 | 98 | <- | Minus |
| arm_2R | 14616348..14616537 | 889..1078 | 100 | <- | Minus |
| arm_2R | 14616675..14617049 | 514..888 | 100 | <- | Minus |
| arm_2R | 14617248..14617744 | 17..513 | 100 | | Minus |
BO33196.pep Sequence
Translation from 16 to 1195
> BO33196.pep
MTQLEISKKSEKPAEKPAEQWGNGLEFLFSCISLSVGLGNIWRFPYIAFQ
NGGGTFVIPYLIALLVIGRPVYYLEISLGQFTGRGVVKAFDMAPLLKGVA
LGQVLATAASITYYSSIMALTLRFWLASFGSELPWSRCWESWGTDCHDGN
AQNSSGKMSPAQLYFEREILHEVPNIDNGLSLPNWQLVACLAIAWLVIGG
VLIRGIKSSGKAAYFLGVFPYVVLLILLLRAVTLPGAIDGIIYFFKPQWR
ELLNPLVWYAAVTQVFFSLAICFGTLITYASYNNFNRNVYNDIVIITTMD
SCSSIIAGCITFGILGNLARETGNPDIGSVVKGGAGLAFISYPEAIAKFE
YVPQALAAPWAWDHASCASFGINSDYAPRPFGNWPAAASFLDH
BO33196.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| List-PC | 387 | CG15088-PC | 1..387 | 1..387 | 2049 | 100 | Plus |
| List-PD | 564 | CG15088-PD | 1..357 | 1..357 | 1858 | 99.4 | Plus |
| CG8850-PA | 616 | CG8850-PA | 29..389 | 3..357 | 1192 | 60.1 | Plus |
| CG8850-PB | 629 | CG8850-PB | 42..402 | 3..357 | 1192 | 60.1 | Plus |
| CG1698-PB | 654 | CG1698-PB | 72..419 | 16..354 | 1129 | 58 | Plus |
