BO33204.complete Sequence
2410 bp assembled on 2012-09-19
GenBank Submission: KX798132
> BO33204.complete
GAAGTTATCAGTCGACATGCCACCACTCCAATCACTTGTGACCGCCCCCC
GGCTATGCAAATTAGCCATTGCAGCGATTTTGCTAATTCTCCAGCTAAAC
GCTAGTGTTGCGCTGCTGCTCAAGTGTCCGTTGCACCAGTTGCAGCTGCA
GAAGATCGTCGGATTCCGGCCACCGCTGGAGTATCTGAATGCGGATAATC
GGATCTACGGACCGGAAATGGTGAGCAACTTCAAGACTCGCAACGGCCAA
CAGGAACTTCCGGTCAGCCAGGTGTGCTGGCGCATCTGCAACGAGGATCC
CGATTGCATTGCCTATGTCCATCTGCTGGACACGGACGAGTGCCATGGCT
ACTCCTACTTCGAGCGAACCTCGCGCTATCTGGCCATTTCGGGTGAACTG
CCTCTGGTGGCAGACGGCGAGGCCGTCTTCTACGAAAAGACCTGCCTCCG
AGTTCCCGATGCGTGCCGTGGGCGTCTCTGGGCACTGACCAAAATCCCCG
GCAGCACGCTGGTCTACCACAGCAAGAAGACCATTTCGACGCTGGTCACG
CGGCGTGAGTGCGCCGAGCGCTGCTTCTTCGAAACCCAGTTCCGATGCCT
CTCCGCCTCCTTTGCGCCCTCCTATCGGAACAATCGTGAGCGCTTCCGCG
GCGAGGCGGGTCCTGGCCAGCGTCCGTCTCCCCGCCTCGGCAGATGTATG
CTGAGCGACAGGGACAAGACCGTCCAGCCGGACGCCTTTCGCGCGGCTCC
ATACGACGAGGAGTACATGGAGAACCAGTGCCACGAACGGGCCATCGAAA
GTGACAACTGTTCCTACGAGCTGTACGCCAACAGCAGTTTCATCTATGCG
GAGGCCAGGTATTTGGGCCTCTCCCAAAAAGAGTGTCAGGCGATGTGCTC
CCACGAGGCGAAGTTCTACTGCCAGGGTGTCTCCTTCTACTATGTAAACC
AACTCTCGCTGTCCGAGTGTCTCCTCCACTCGGAGGACATTGTATCCCTG
GGTCCGCGAAGCCTGAAGCTCCGTGAAAACTCGGTGTACATGCGGAGGGT
CAAGTGCCTGGATGTCCGGGTTTTTTGCACCCGCGATGAGATGACCATTA
AGTACAATCCCAAGGACTGGTTCGTCGGCAAGATCTATGCCAGCATGCAC
TCCAAGGACTGCCTGGCCAGAGGATCGGGCAATGGGAGTGTTCTGCTGAC
GCTCCAGATCGGCAGCGAGGTAAAGGAGAACCGCTGTGGCATCCTGCGTG
CCTACGAAATGACACAGGAATACCAAAGAACGTTCATATCTGCTCTGGTG
GTCATCCAAAACAATCCAAATGTGCAAACCCAGGGCGACCGGCTCATCAA
GGTTGGCTGTATACAGAGCAATGCCACCACATCGCTGGGCGTTTCGGTTC
GGGACAGCAGTGTGGATAGCTCAGAGCCTGTGCCCAGCGCCATTGCACTG
GAGTCCTCATTGGAGTACACAGAACACATGTTCCCACACGAGGGTGTGGT
TCACTACAACAGCAGCACTGGGCCCCATCCGCATCCCAGCATCTCGCTTC
AGATTTTGGATCTATCCCACCAGCACGAGACCAACGACGTGCAGATTGGA
CAGAACCTGGAACTACAGATTGTGGCGGAGTACAGCCCACAGCAGTTGGC
AGAGCACATGGAGTTGCAGCTGGCACCACTACCCGACTTTCGTGCTACCT
CGCTGGTGGCCAAGACAGCGGACAATGAGAACTTTGTGCTGCTGATCGAC
GAGCGAGGATGTCCCACAGATGCCAGTGTGTTTCCCGCTTTGGAAAGGGT
ACACACAGCCAGCAGGAGCATGTTGCGCGCTCGCTTCCATGCCTTCAAGT
TCTCAGGAACGGCCAACGTAAGCTTCGATGTAAAGATTCGCTTCTGCGTG
GAGCGCTGCTCGCCCAGCAATTGTATTAGTTCATCCTGGCAACGGAGAAG
GCGACAGGCTGACCAACCAGATCGTAGACCGGAAGACCTACGAGTTCAGA
ACCCCGTGTACATCTCCACGGTGGTGGATGTGGCTCCGCAACCAGACAAC
TTTACCAGATCGCAGGAGGAATTGCCCCTCAACTACAATATCCGGGTGCA
CGGTCCGGACCAGAGCAACACCAATAGTTATCTGTACGGCGAGCGGGGAG
TGCTGCTCATTGCTGGCATAGACGACCCGCTGCACCTGGATAACGTTTGC
ATCAACCAGAGCCTGCTGATTGCACTGTTCATCTTCTGGCTGATCTGTCA
AGTTGCCCTGCTCTTCGGCTGTGGAATGGTGCTGCAGCGCTACCGCCGGC
TGGCCAAGCTCGAGGATGAGCGACGCAGGCTGCACGAGGAGTACCTGGAG
GCGAGGAGAGTCCACTGGGCGGATCAAGGCGGATACACACTCGCAAGCTT
TCTAGACCAT
BO33204.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:06:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17111-RB | 2379 | CG17111-PB | 1..2376 | 17..2392 | 11865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17111-RB | 2959 | CG17111-RB | 519..2894 | 17..2392 | 11865 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:06:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23062778..23063693 | 2392..1477 | 4580 | 100 | Minus |
3R | 32079331 | 3R | 23065538..23065883 | 452..107 | 1715 | 99.7 | Minus |
3R | 32079331 | 3R | 23064561..23064802 | 883..642 | 1210 | 100 | Minus |
3R | 32079331 | 3R | 23064012..23064226 | 1278..1064 | 1075 | 100 | Minus |
3R | 32079331 | 3R | 23063756..23063955 | 1476..1277 | 1000 | 100 | Minus |
3R | 32079331 | 3R | 23065279..23065470 | 642..451 | 960 | 100 | Minus |
3R | 32079331 | 3R | 23064282..23064464 | 1064..882 | 915 | 100 | Minus |
3R | 32079331 | 3R | 23066651..23066741 | 107..17 | 455 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:06:10 has no hits.
BO33204.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 13:56:05 Download gff for
BO33204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17111-RB | 519..2894 | 17..2394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:58 Download gff for
BO33204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17111-RB | 519..2894 | 17..2394 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:09 Download gff for
BO33204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17111-RB | 519..2894 | 17..2394 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:09 Download gff for
BO33204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23065279..23065468 | 453..642 | 100 | <- | Minus |
3R | 23065538..23065882 | 108..452 | 99 | <- | Minus |
3R | 23066651..23066741 | 17..107 | 100 | | Minus |
3R | 23062776..23063693 | 1477..2394 | 99 | <- | Minus |
3R | 23063756..23063953 | 1279..1476 | 100 | <- | Minus |
3R | 23064012..23064225 | 1065..1278 | 100 | <- | Minus |
3R | 23064282..23064462 | 884..1064 | 100 | <- | Minus |
3R | 23064561..23064801 | 643..883 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:58 Download gff for
BO33204.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18891001..18891190 | 453..642 | 100 | <- | Minus |
arm_3R | 18888498..18889415 | 1477..2394 | 99 | <- | Minus |
arm_3R | 18889478..18889675 | 1279..1476 | 100 | <- | Minus |
arm_3R | 18889734..18889947 | 1065..1278 | 100 | <- | Minus |
arm_3R | 18890004..18890184 | 884..1064 | 100 | <- | Minus |
arm_3R | 18890283..18890523 | 643..883 | 100 | <- | Minus |
arm_3R | 18891260..18891604 | 108..452 | 99 | <- | Minus |
arm_3R | 18892373..18892463 | 17..107 | 100 | | Minus |
BO33204.pep Sequence
Translation from 16 to 2410
> BO33204.pep
MPPLQSLVTAPRLCKLAIAAILLILQLNASVALLLKCPLHQLQLQKIVGF
RPPLEYLNADNRIYGPEMVSNFKTRNGQQELPVSQVCWRICNEDPDCIAY
VHLLDTDECHGYSYFERTSRYLAISGELPLVADGEAVFYEKTCLRVPDAC
RGRLWALTKIPGSTLVYHSKKTISTLVTRRECAERCFFETQFRCLSASFA
PSYRNNRERFRGEAGPGQRPSPRLGRCMLSDRDKTVQPDAFRAAPYDEEY
MENQCHERAIESDNCSYELYANSSFIYAEARYLGLSQKECQAMCSHEAKF
YCQGVSFYYVNQLSLSECLLHSEDIVSLGPRSLKLRENSVYMRRVKCLDV
RVFCTRDEMTIKYNPKDWFVGKIYASMHSKDCLARGSGNGSVLLTLQIGS
EVKENRCGILRAYEMTQEYQRTFISALVVIQNNPNVQTQGDRLIKVGCIQ
SNATTSLGVSVRDSSVDSSEPVPSAIALESSLEYTEHMFPHEGVVHYNSS
TGPHPHPSISLQILDLSHQHETNDVQIGQNLELQIVAEYSPQQLAEHMEL
QLAPLPDFRATSLVAKTADNENFVLLIDERGCPTDASVFPALERVHTASR
SMLRARFHAFKFSGTANVSFDVKIRFCVERCSPSNCISSSWQRRRRQADQ
PDRRPEDLRVQNPVYISTVVDVAPQPDNFTRSQEELPLNYNIRVHGPDQS
NTNSYLYGERGVLLIAGIDDPLHLDNVCINQSLLIALFIFWLICQVALLF
GCGMVLQRYRRLAKLEDERRRLHEEYLEARRVHWADQGGYTLASFLDH
BO33204.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:45:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17111-PB | 792 | CG17111-PB | 1..792 | 1..792 | 4175 | 100 | Plus |
nyo-PD | 805 | CG1499-PD | 192..618 | 137..638 | 266 | 23.4 | Plus |
nyo-PC | 805 | CG1499-PC | 192..618 | 137..638 | 266 | 23.4 | Plus |
neo-PB | 744 | CG7802-PB | 191..648 | 137..659 | 222 | 22 | Plus |
neo-PA | 744 | CG7802-PA | 191..648 | 137..659 | 222 | 22 | Plus |