Clone BO33204 Report

Search the DGRC for BO33204

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:332
Well:4
Vector:pDNR-Dual
Associated Gene/TranscriptCG17111-RB
Protein status:BO33204.pep: Imported from assembly
Sequenced Size:2410

Clone Sequence Records

BO33204.complete Sequence

2410 bp assembled on 2012-09-19

GenBank Submission: KX798132

> BO33204.complete
GAAGTTATCAGTCGACATGCCACCACTCCAATCACTTGTGACCGCCCCCC
GGCTATGCAAATTAGCCATTGCAGCGATTTTGCTAATTCTCCAGCTAAAC
GCTAGTGTTGCGCTGCTGCTCAAGTGTCCGTTGCACCAGTTGCAGCTGCA
GAAGATCGTCGGATTCCGGCCACCGCTGGAGTATCTGAATGCGGATAATC
GGATCTACGGACCGGAAATGGTGAGCAACTTCAAGACTCGCAACGGCCAA
CAGGAACTTCCGGTCAGCCAGGTGTGCTGGCGCATCTGCAACGAGGATCC
CGATTGCATTGCCTATGTCCATCTGCTGGACACGGACGAGTGCCATGGCT
ACTCCTACTTCGAGCGAACCTCGCGCTATCTGGCCATTTCGGGTGAACTG
CCTCTGGTGGCAGACGGCGAGGCCGTCTTCTACGAAAAGACCTGCCTCCG
AGTTCCCGATGCGTGCCGTGGGCGTCTCTGGGCACTGACCAAAATCCCCG
GCAGCACGCTGGTCTACCACAGCAAGAAGACCATTTCGACGCTGGTCACG
CGGCGTGAGTGCGCCGAGCGCTGCTTCTTCGAAACCCAGTTCCGATGCCT
CTCCGCCTCCTTTGCGCCCTCCTATCGGAACAATCGTGAGCGCTTCCGCG
GCGAGGCGGGTCCTGGCCAGCGTCCGTCTCCCCGCCTCGGCAGATGTATG
CTGAGCGACAGGGACAAGACCGTCCAGCCGGACGCCTTTCGCGCGGCTCC
ATACGACGAGGAGTACATGGAGAACCAGTGCCACGAACGGGCCATCGAAA
GTGACAACTGTTCCTACGAGCTGTACGCCAACAGCAGTTTCATCTATGCG
GAGGCCAGGTATTTGGGCCTCTCCCAAAAAGAGTGTCAGGCGATGTGCTC
CCACGAGGCGAAGTTCTACTGCCAGGGTGTCTCCTTCTACTATGTAAACC
AACTCTCGCTGTCCGAGTGTCTCCTCCACTCGGAGGACATTGTATCCCTG
GGTCCGCGAAGCCTGAAGCTCCGTGAAAACTCGGTGTACATGCGGAGGGT
CAAGTGCCTGGATGTCCGGGTTTTTTGCACCCGCGATGAGATGACCATTA
AGTACAATCCCAAGGACTGGTTCGTCGGCAAGATCTATGCCAGCATGCAC
TCCAAGGACTGCCTGGCCAGAGGATCGGGCAATGGGAGTGTTCTGCTGAC
GCTCCAGATCGGCAGCGAGGTAAAGGAGAACCGCTGTGGCATCCTGCGTG
CCTACGAAATGACACAGGAATACCAAAGAACGTTCATATCTGCTCTGGTG
GTCATCCAAAACAATCCAAATGTGCAAACCCAGGGCGACCGGCTCATCAA
GGTTGGCTGTATACAGAGCAATGCCACCACATCGCTGGGCGTTTCGGTTC
GGGACAGCAGTGTGGATAGCTCAGAGCCTGTGCCCAGCGCCATTGCACTG
GAGTCCTCATTGGAGTACACAGAACACATGTTCCCACACGAGGGTGTGGT
TCACTACAACAGCAGCACTGGGCCCCATCCGCATCCCAGCATCTCGCTTC
AGATTTTGGATCTATCCCACCAGCACGAGACCAACGACGTGCAGATTGGA
CAGAACCTGGAACTACAGATTGTGGCGGAGTACAGCCCACAGCAGTTGGC
AGAGCACATGGAGTTGCAGCTGGCACCACTACCCGACTTTCGTGCTACCT
CGCTGGTGGCCAAGACAGCGGACAATGAGAACTTTGTGCTGCTGATCGAC
GAGCGAGGATGTCCCACAGATGCCAGTGTGTTTCCCGCTTTGGAAAGGGT
ACACACAGCCAGCAGGAGCATGTTGCGCGCTCGCTTCCATGCCTTCAAGT
TCTCAGGAACGGCCAACGTAAGCTTCGATGTAAAGATTCGCTTCTGCGTG
GAGCGCTGCTCGCCCAGCAATTGTATTAGTTCATCCTGGCAACGGAGAAG
GCGACAGGCTGACCAACCAGATCGTAGACCGGAAGACCTACGAGTTCAGA
ACCCCGTGTACATCTCCACGGTGGTGGATGTGGCTCCGCAACCAGACAAC
TTTACCAGATCGCAGGAGGAATTGCCCCTCAACTACAATATCCGGGTGCA
CGGTCCGGACCAGAGCAACACCAATAGTTATCTGTACGGCGAGCGGGGAG
TGCTGCTCATTGCTGGCATAGACGACCCGCTGCACCTGGATAACGTTTGC
ATCAACCAGAGCCTGCTGATTGCACTGTTCATCTTCTGGCTGATCTGTCA
AGTTGCCCTGCTCTTCGGCTGTGGAATGGTGCTGCAGCGCTACCGCCGGC
TGGCCAAGCTCGAGGATGAGCGACGCAGGCTGCACGAGGAGTACCTGGAG
GCGAGGAGAGTCCACTGGGCGGATCAAGGCGGATACACACTCGCAAGCTT
TCTAGACCAT

BO33204.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:06:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG17111-RB 2379 CG17111-PB 1..2376 17..2392 11865 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG17111-RB 2959 CG17111-RB 519..2894 17..2392 11865 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:06:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23062778..23063693 2392..1477 4580 100 Minus
3R 32079331 3R 23065538..23065883 452..107 1715 99.7 Minus
3R 32079331 3R 23064561..23064802 883..642 1210 100 Minus
3R 32079331 3R 23064012..23064226 1278..1064 1075 100 Minus
3R 32079331 3R 23063756..23063955 1476..1277 1000 100 Minus
3R 32079331 3R 23065279..23065470 642..451 960 100 Minus
3R 32079331 3R 23064282..23064464 1064..882 915 100 Minus
3R 32079331 3R 23066651..23066741 107..17 455 100 Minus
Blast to na_te.dros performed on 2014-11-28 12:06:10 has no hits.

BO33204.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 13:56:05 Download gff for BO33204.complete
Subject Subject Range Query Range Percent Splice Strand
CG17111-RB 519..2894 17..2394 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:58 Download gff for BO33204.complete
Subject Subject Range Query Range Percent Splice Strand
CG17111-RB 519..2894 17..2394 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:09 Download gff for BO33204.complete
Subject Subject Range Query Range Percent Splice Strand
CG17111-RB 519..2894 17..2394 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:09 Download gff for BO33204.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23065279..23065468 453..642 100 <- Minus
3R 23065538..23065882 108..452 99 <- Minus
3R 23066651..23066741 17..107 100   Minus
3R 23062776..23063693 1477..2394 99 <- Minus
3R 23063756..23063953 1279..1476 100 <- Minus
3R 23064012..23064225 1065..1278 100 <- Minus
3R 23064282..23064462 884..1064 100 <- Minus
3R 23064561..23064801 643..883 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:58 Download gff for BO33204.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18891001..18891190 453..642 100 <- Minus
arm_3R 18888498..18889415 1477..2394 99 <- Minus
arm_3R 18889478..18889675 1279..1476 100 <- Minus
arm_3R 18889734..18889947 1065..1278 100 <- Minus
arm_3R 18890004..18890184 884..1064 100 <- Minus
arm_3R 18890283..18890523 643..883 100 <- Minus
arm_3R 18891260..18891604 108..452 99 <- Minus
arm_3R 18892373..18892463 17..107 100   Minus

BO33204.pep Sequence

Translation from 16 to 2410

> BO33204.pep
MPPLQSLVTAPRLCKLAIAAILLILQLNASVALLLKCPLHQLQLQKIVGF
RPPLEYLNADNRIYGPEMVSNFKTRNGQQELPVSQVCWRICNEDPDCIAY
VHLLDTDECHGYSYFERTSRYLAISGELPLVADGEAVFYEKTCLRVPDAC
RGRLWALTKIPGSTLVYHSKKTISTLVTRRECAERCFFETQFRCLSASFA
PSYRNNRERFRGEAGPGQRPSPRLGRCMLSDRDKTVQPDAFRAAPYDEEY
MENQCHERAIESDNCSYELYANSSFIYAEARYLGLSQKECQAMCSHEAKF
YCQGVSFYYVNQLSLSECLLHSEDIVSLGPRSLKLRENSVYMRRVKCLDV
RVFCTRDEMTIKYNPKDWFVGKIYASMHSKDCLARGSGNGSVLLTLQIGS
EVKENRCGILRAYEMTQEYQRTFISALVVIQNNPNVQTQGDRLIKVGCIQ
SNATTSLGVSVRDSSVDSSEPVPSAIALESSLEYTEHMFPHEGVVHYNSS
TGPHPHPSISLQILDLSHQHETNDVQIGQNLELQIVAEYSPQQLAEHMEL
QLAPLPDFRATSLVAKTADNENFVLLIDERGCPTDASVFPALERVHTASR
SMLRARFHAFKFSGTANVSFDVKIRFCVERCSPSNCISSSWQRRRRQADQ
PDRRPEDLRVQNPVYISTVVDVAPQPDNFTRSQEELPLNYNIRVHGPDQS
NTNSYLYGERGVLLIAGIDDPLHLDNVCINQSLLIALFIFWLICQVALLF
GCGMVLQRYRRLAKLEDERRRLHEEYLEARRVHWADQGGYTLASFLDH

BO33204.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:45:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG17111-PB 792 CG17111-PB 1..792 1..792 4175 100 Plus
nyo-PD 805 CG1499-PD 192..618 137..638 266 23.4 Plus
nyo-PC 805 CG1499-PC 192..618 137..638 266 23.4 Plus
neo-PB 744 CG7802-PB 191..648 137..659 222 22 Plus
neo-PA 744 CG7802-PA 191..648 137..659 222 22 Plus