BO33230.complete Sequence
3517 bp assembled on 2012-09-19
GenBank Submission: KX797927
> BO33230.complete
GAAGTTATCAGTCGACATGCCCTCGCAGGTCTCCCGAGGATTGGACACCA
CCAACATGCTGCCGATCAGCGAGGAGCAGCAGCTGCAACAGCAGCAGCAG
CAGCAGCAGTTAGAGCAACTGCATCATCCGCAGATACCAGAGATTCCCAT
ACCAGATCTAGAGCAAGTCGAGACCCAGGTGGGCGATGGCAGCCTGTGGA
CCGCGCTGTATGACTACGATGCCCAGGGCGAGGATGAGCTGACACTGCGA
CGCGGCGAAATCGTTGTGGTCCTGTCCACGGACAGCGAGGTGTCTGGCGA
TGTGGGCTGGTGGACCGGCAAGATTGGAGATAAGGTCGGTGTCTTTCCCA
AGGACTTTGTCACCGATGAGGACCCACTGCAACTGAATGTCTCGTCCGCC
ATTGGCGACATCCAGCCGCATGAGATCGAATACAATGAGCTGGACATCAA
GGAAGTTATCGGCTCCGGTGGCTTCTGCAAGGTCCATCGTGGCTACTACG
ATGGCGAGGAGGTGGCTATTAAGATTGCCCATCAAACGGGCGAGGATGAT
ATGCAGAGGATGCGGGACAATGTCCTGCAGGAGGCCAAACTGTTTTGGGC
CCTCAAGCACGAAAATATAGCAGCCCTGCGAGGAGTATGTCTGAATACCA
AACTCTGTCTGGTGATGGAGTATGCCAGGGGAGGAAGTCTCAATCGCATA
CTGGCTGGCAAGATACCACCCGATGTACTAGTCAACTGGGCCATTCAGAT
AGCCAGAGGCATGAACTATCTGCACAATGAGGCGCCCATGTCGATCATAC
ATCGCGACCTCAAGTCCTCCAATGTGCTGATCTACGAGGCCATCGAGGGC
AATCATCTGCAGCAGAAGACGCTCAAGATCACGGATTTCGGTTTGGCCAG
GGAGATGTACAACACGCAGAGGATGAGTGCGGCGGGCACGTACGCTTGGA
TGCCACCGGAGGTCATCAGCGTTAGCACCTATTCCAAATTCTCCGATGTT
TGGAGCTACGGTGTCTTGCTGTGGGAACTGATAACGGGCGAGACGCCCTA
CAAGGGCTTCGATCCGTTGTCCGTGGCCTATGGCGTGGCTGTTAACACGC
TGACATTGCCCATACCAAAAACCTGCCCCGAGACGTGGGGAGCCCTGATG
AAGAGCTGCTGGCAAACGGATCCGCACAAGCGACCGGGCTTCAAGGAGAT
TCTCAAACAGCTGGAGAGCATCGCATGCTCCAAATTCACCCTAACGCCCC
AGGAGTCGTTTCACTACATGCAGGAATGCTGGCGAAAGGAGATCGCTGGA
GTGCTACACGATTTGCGCGAAAAAGAAAAGGAACTGCGCAACAAGGAAGA
GCAGCTGCTCAGGGTGCAAAACGAGCAGCGCGAAAAGGCGAATCTCCTGA
AGATCCGGGAGCAGAATCTGCGCGAGCGTGAAAGAGTGTTGATCGAACGG
GAGCTTGTCATGTTGCAGCCGGTGCCATCGAAACGCAAACACAAAAAGGG
CAAAAAGAACAAACCACTGCAGATATCGCTGCCCACGGGCTTCCGGCACA
CGATTACGGCTGTACGCGACAAGGCGGAACAGCCGGGATCACCTTCCTTC
TCCGGATTGCGCATCGTGGCACTGACCGATGGGCACAAGGGCAAGACGTG
GGGCCCGTCGACGATGCACCAGCGGGAGCGATCCCTATTGCCTTCGCAAC
TGAGCGGCGGTCAGCCGGAATGGCCCGCCCAGACCTCAACTCACTCCTCA
TTCAGCAAGAGTGCTCCGAATCTGGACAAGAAGCAGCAGCAGCAGAACCA
GCAACAGGTGGCCTCGCTGACACCGCCGCCGGGTTTGGGAATTTTGGGTG
GAAGTGGAGGCGCTGGTGGGACGCCGGCCACACCATTGTTGTACCCAGGT
ATACCCATTATACTAACGCGCCCCAACAACAACAACATTGGCAATTGTAA
AGCCATCACCACCACCATCACAACTACCACCACCACAACCACCAACAACA
ACAACAACAACAACAACAGCATCTCCGCCAACAACAACAATCAGCTAAAT
AATATTAGTACTATTAATAGCAATAACAATAACAATCAAACTAACCTGAC
CTCCCAACCGAACACGATAATTGTCCTCCAAAACGGCCGGAACAACTCCA
ACAGCAGCACCACCAGTCAATCCCCAGCCAAGATCTACCATCGCGCCAGG
AGCCAGGAGTACGGACTTGATCATCCGCTTGCTTATCAGCCACCACCACT
CTATTTGGTAACGGATGACAGCTCGGAAACGGACACCGTTGCCAGTCCGA
CCGGTTGCTTTCACTTCCTGAAGTCCGGCAATTCATCGGCGGCCAGTGGT
GCCGTGCATCTGCATCGCTTTGGCGGCAGTCTGGGCAACAGTCCAGCTGT
GGGCAGAAAGAAGCATTCGCTGGACAGCAGCAGTCATCATCCGCCTGCGA
ACGGTAGCAATAGCTTTGCACTGCCCAACCAGTTAACTCTGCCATCGGAG
GATAACAATACGTATGACCATGCCTTCTATCGGGATGTGATCAAAAAGAT
GTCCATGGCCAGCAGCGAAAGGGTAAACTCCAAATCCAGTGGCGACCTGA
CCATGTACAACTCCAGCACACCGCTGACTGCCAGGGATTGCGATGATGCG
GAGGAGGCCTTCGAGGGTGGACGCTTTCAGCGTAACTTTTCCGGCTCGCA
GTTTCCACGGCACTGCTTCTTCACCAGGCAGGAGGAGGAAGGGGAAGCAG
AGGATGAGGACGCGGTGGCGGCGGAGGTGGACACAGCAGATGCGGATGCC
GACGATGAGTGTCAAGTGCCCGCCAGTCAGATGCGCCAGAACTCCACCAC
GTCGCGCAAGAGTTCAGTGACCTTCCAGAGCGTCAGTTTCGAAGAGCCCG
ATTTTGTGGCCACGCCGCGAACGACTGCCAGATCGGATCTATATACATCC
AGTGCCTCAATTAGCTTCGCCACCTACCGCTCCGCCTCGCCATCGCTGTC
CTCATCGTCCACCACTGCGTCCGCCTCACCGTCCATTGCTTCTACGGAAG
CCGTGAACGGCTATCACATGCAGGAGAACTCCATACTGAATACGCGTCGG
ATGCAAGATGTTCAGCCGCATCCCGATGTCATTAAGCTGCGGGCCCAGGA
ACAGCGCCAGCAGACCAAGAACCAAAAGAAGCAACGGCCCAAGCACATAA
CCAAATCCAAGTCTGTTGAGGCGCCAGTCGAGGGACAGCACCATGAACAT
GATGACCACAATGATCCCCAGCACCAGCATCACTCGGCTGGATCGAGCAA
AATCCGTGCCCTTTTCAATCTCTTTACGCGCTCGCGAAAGAAGTACAGCA
AGCTGGCGGAGCACAACATGGTCGGTGGACCCGAGTTCTGTGCCATTGAT
CCCTATCAAACCGATTTGGCGATGGGGGGCAGCAGTCGCTCTTTGAAGCG
CAAAGGCAAAAAGCCGCAGACGCAATCCTGCGAGCAACTGGAGCGATGCG
CAAGCTTTCTAGACCAT
BO33230.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:03:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slpr-RD | 3447 | CG2272-PD | 1..3444 | 56..3499 | 17220 | 100 | Plus |
| slpr-RC | 3447 | CG2272-PC | 1..3444 | 56..3499 | 17220 | 100 | Plus |
| slpr-RA | 3447 | CG2272-PA | 1..3444 | 56..3499 | 17220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slpr-RD | 4945 | CG2272-RD | 557..4039 | 17..3499 | 17415 | 100 | Plus |
| slpr-RC | 5594 | CG2272-RC | 756..4238 | 17..3499 | 17415 | 100 | Plus |
| slpr-RA | 5144 | CG2272-RA | 756..4238 | 17..3499 | 17415 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:03:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8171585..8173461 | 3499..1623 | 9385 | 100 | Minus |
| X | 23542271 | X | 8175302..8175956 | 987..333 | 3275 | 100 | Minus |
| X | 23542271 | X | 8176013..8176332 | 336..17 | 1600 | 100 | Minus |
| X | 23542271 | X | 8174038..8174216 | 1507..1329 | 895 | 100 | Minus |
| X | 23542271 | X | 8174822..8174998 | 1331..1155 | 885 | 100 | Minus |
| X | 23542271 | X | 8175068..8175239 | 1155..984 | 845 | 99.4 | Minus |
| X | 23542271 | X | 8173861..8173977 | 1622..1506 | 585 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2414..2707 | 1920..2206 | 280 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2384..2631 | 1920..2170 | 241 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2336..2530 | 1920..2117 | 226 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2459..2624 | 1920..2085 | 216 | 61.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1509..1665 | 1912..2069 | 193 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6885 | 1993..2165 | 180 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2810..2982 | 1920..2095 | 171 | 57.9 | Plus |
| BS | 5142 | BS BS 5142bp | 2000..2152 | 1905..2056 | 141 | 57.4 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3285..3347 | 2143..2205 | 126 | 66.7 | Plus |
BO33230.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 11:11:53 Download gff for
BO33230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slpr-RC | 489..3971 | 17..3501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:26 Download gff for
BO33230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slpr-RA | 756..4238 | 17..3501 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:18 Download gff for
BO33230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| slpr-RA | 756..4238 | 17..3501 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:18 Download gff for
BO33230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8171583..8173461 | 1623..3501 | 99 | <- | Minus |
| X | 8173861..8173975 | 1508..1622 | 100 | <- | Minus |
| X | 8174038..8174214 | 1331..1507 | 100 | <- | Minus |
| X | 8174823..8174998 | 1155..1330 | 100 | <- | Minus |
| X | 8175069..8175235 | 988..1154 | 100 | <- | Minus |
| X | 8175302..8175954 | 335..987 | 100 | <- | Minus |
| X | 8176015..8176332 | 17..334 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:26 Download gff for
BO33230.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8069102..8069268 | 988..1154 | 100 | <- | Minus |
| arm_X | 8065616..8067494 | 1623..3501 | 99 | <- | Minus |
| arm_X | 8067894..8068008 | 1508..1622 | 100 | <- | Minus |
| arm_X | 8068071..8068247 | 1331..1507 | 100 | <- | Minus |
| arm_X | 8068856..8069031 | 1155..1330 | 100 | <- | Minus |
| arm_X | 8069335..8069987 | 335..987 | 100 | <- | Minus |
| arm_X | 8070048..8070365 | 17..334 | 100 | | Minus |
BO33230.pep Sequence
Translation from 16 to 3517
> BO33230.pep
MPSQVSRGLDTTNMLPISEEQQLQQQQQQQQLEQLHHPQIPEIPIPDLEQ
VETQVGDGSLWTALYDYDAQGEDELTLRRGEIVVVLSTDSEVSGDVGWWT
GKIGDKVGVFPKDFVTDEDPLQLNVSSAIGDIQPHEIEYNELDIKEVIGS
GGFCKVHRGYYDGEEVAIKIAHQTGEDDMQRMRDNVLQEAKLFWALKHEN
IAALRGVCLNTKLCLVMEYARGGSLNRILAGKIPPDVLVNWAIQIARGMN
YLHNEAPMSIIHRDLKSSNVLIYEAIEGNHLQQKTLKITDFGLAREMYNT
QRMSAAGTYAWMPPEVISVSTYSKFSDVWSYGVLLWELITGETPYKGFDP
LSVAYGVAVNTLTLPIPKTCPETWGALMKSCWQTDPHKRPGFKEILKQLE
SIACSKFTLTPQESFHYMQECWRKEIAGVLHDLREKEKELRNKEEQLLRV
QNEQREKANLLKIREQNLRERERVLIERELVMLQPVPSKRKHKKGKKNKP
LQISLPTGFRHTITAVRDKAEQPGSPSFSGLRIVALTDGHKGKTWGPSTM
HQRERSLLPSQLSGGQPEWPAQTSTHSSFSKSAPNLDKKQQQQNQQQVAS
LTPPPGLGILGGSGGAGGTPATPLLYPGIPIILTRPNNNNIGNCKAITTT
ITTTTTTTTNNNNNNNNSISANNNNQLNNISTINSNNNNNQTNLTSQPNT
IIVLQNGRNNSNSSTTSQSPAKIYHRARSQEYGLDHPLAYQPPPLYLVTD
DSSETDTVASPTGCFHFLKSGNSSAASGAVHLHRFGGSLGNSPAVGRKKH
SLDSSSHHPPANGSNSFALPNQLTLPSEDNNTYDHAFYRDVIKKMSMASS
ERVNSKSSGDLTMYNSSTPLTARDCDDAEEAFEGGRFQRNFSGSQFPRHC
FFTRQEEEGEAEDEDAVAAEVDTADADADDECQVPASQMRQNSTTSRKSS
VTFQSVSFEEPDFVATPRTTARSDLYTSSASISFATYRSASPSLSSSSTT
ASASPSIASTEAVNGYHMQENSILNTRRMQDVQPHPDVIKLRAQEQRQQT
KNQKKQRPKHITKSKSVEAPVEGQHHEHDDHNDPQHQHHSAGSSKIRALF
NLFTRSRKKYSKLAEHNMVGGPEFCAIDPYQTDLAMGGSSRSLKRKGKKP
QTQSCEQLERCASFLDH
BO33230.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| slpr-PD | 1148 | CG2272-PD | 1..1148 | 14..1161 | 6026 | 100 | Plus |
| slpr-PC | 1148 | CG2272-PC | 1..1148 | 14..1161 | 6026 | 100 | Plus |
| slpr-PA | 1148 | CG2272-PA | 1..1148 | 14..1161 | 6026 | 100 | Plus |
| slpr-PB | 1155 | CG2272-PB | 1..1155 | 14..1161 | 6008 | 99.4 | Plus |
| wnd-PD | 950 | CG8789-PD | 94..474 | 96..500 | 517 | 31.7 | Plus |
