BO33233.complete Sequence
2527 bp assembled on 2012-09-19
GenBank Submission: KX799734
> BO33233.complete
GAAGTTATCAGTCGACATGAGAAAGCAAAAGGACGATATGCAGGTCAATG
TCGCTGGTCTGCGCAGAAACATCAAGAACCTTGCGCACAACTACTCCGAT
GCCCAGGTTAAAGTGCGTGAGGCAACCTCGAATGACCCTTGGGGTCCTTC
GGCTGCCATCATGAGCGAGATAGCGGAACTCACCTACAATGTGGTGGCCT
TTTCGGAAATCATGCAGATGATCTGGAAGCGTCTTAATGACCACGGCAAG
AACTGGCGACATGTGTACAAGGCACTCATTTTGCTGGAGTATCTGATTAA
AACCGGCTCGGAAAAGGTCGCCCAGCAGTGCAAGGAGAACATCTTTGCCA
TTCAAACCCTGCGAGAGTTTGTGTATTTCGAAGAGGGCAAGGATCAGGGC
ACCCATGTCCGTGAGAAGGCCAAGCAGCTGGTCACTCTTCTTAAGGATGA
CGAGCGACTGAAGAATGAGCGTGTGAAGGCGCAGAAGGCAAAGGAAAGAT
TCGCCCAGAACCCGAGTGGGTTCGGCAGCGATGGCTATATTGATGGACCA
TCGCAACGAGACTTGCCGCCAGGCTGGCAGGAGGAGCCGCCTAAATCGGT
ATCCGAACTGGAAATGGTTCGTCCCCAGACGGCCGGCGAGGAGGAACTTC
AACTGCAGCTGGCCATGGCCATGTCACGAGAGGAAGCGGAACAGGAGGAG
GCCAAGCGACGCAGTGATGATGTGCGTCTGCAACTCGCCCTCAGCCAGAG
TGAGCAGGATTTCAAGGATCCAAACGGACGACCTATTCCTGCGCCCAAGA
AGGAGGAACAACAGAGTCATTTGCTAGATCTGCTGGATATTTCTCTGGGG
GCTACGAGCATCTCAAGTCCGCCGCTGGGCGCTGCAGGCGGCGCCCCCAC
GGCTGTTGTCGATCCCTGGGCCATGCCAGGTCCAAGAGCTCCCAGCCAGT
TGTCCGATCCGTGGTCAGGTACTTCCTCGCCTCAAGTGGATCCCTGGAAT
CCCTCCGCTGCCCCACGAACCATCTTGGGTGCCGGAGTGCCGATGACTTC
GGCGCCATTGGGAGCTGGAAACGATGCCTGGGGAGCTCGCACTCAGTCGC
CTTCGGTGGCCTCGGGCTCCTCCAACGAAGGTTGGCTGCAAAGTAATGGT
AATGCCAACCAAAACGGACGTGGAGCCACTCCGGCCGGCCCTCCTGCTGA
AGGCTGGCTGATAAAATCCACTGCTGTCGGAGCTTTGGGAGCTGCGCCAA
TTAATCATGCGGCAAATAATGGTAGCTCATCTTCGGATCCCTGGCTAGCA
GAGCCAGCAGCATCGGCGGCAGGAGGAGCAGCAGCAGTTGGCTTGGCAGA
TCCCTGGGCGCCAGGAGCAGCATCTCAAACGGGTGCGGGGGCACTGGATG
ACCCATGGAAAGCACTCGGAACTGGCGCCATTAAGAAACAATCCCCCGAG
TTTGATGAGTTCGACTTGATCACCAACCGAAACAAGAGTGAGCACAGCAA
TTCTAACGCCTCCAACAACAACAATGCTTCTCTGCTCGATGACATGGATC
CGCTATCGGCGAACTACGGAAATGGAGGTATAAATAGCAGTATGCATCCG
TCGACGGGGGCCACGGCAAAGAAATCTATAAAGGATGCTCATTCTTTCCT
CGGCGAGAACTCTGCGCTTGTTAACCTAGACAATCTGATCAAACCGATTG
CGCCACAGACGCAAACGGGTAATCAGCCGGCGTACAATCCCTTCAGCGAC
AACGTAGTGCCACCCAAGACGAATCTATTCCAGCAACAGCAGCCAGCCGT
GCCGTCCATCAATCAGCTGAAACAACAGGCCCCGTTTTCAGTCAGCATGA
ACCAAGATCCCTGGGCACCTGTAATGGGCGGAGTTAGTACGACTTCGCAG
CCAAAACTTCCGCCTCCCGTACGTCCCACTAGCCTCAATTTGGGGCCCTC
GTCTGTGGGTGAATTTCAACTGTTGAGTGCGTTAAGTAATCCCATCATTC
CCATTGCCCACATCCCCCAGCCACAGCCCAATTTGCAGGTCTACAATAAT
GCGTATCAAAGTAGCAGCAGCACTAATATCCTTGGAAAAAGCAACATCCC
GACCAATATGAATAGCTCCACCAGCAACAGCACCATACACAGCTGTTACG
CAAGTCCGAGTCCGGGCGTCGATGGCATTCGCAACATGGATATATTCACC
GAACGTCCTTACTATAATAGTCCAACAGCACCTGCTGATGATACCTACAT
GTACAACAGCAGGGATAATAACAATATCAACAGCAACTATGGTACTCCCA
GTCTATATTCAAGTTTTGCTGCCAGCTATAGCAGCGCCCTATCCGATTCT
CTGGCCGAAACTCCTGGAATTAGTGTTGCTCCCTTGGGTTTTGTGGCCGA
TACTGTCATGAGTTTTGGTCCCTCATCCTCGTCGGCCAACTGCAAGCTGG
AACAAAATAACAACATGCCGTGGATCAAGCCGGAAGCAGCAACAAATCCG
TTTTTGTCGGCAAGCTTTCTAGACCAT
BO33233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:05:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lqf-RA | 2496 | CG8532-PA | 1..2493 | 17..2509 | 12465 | 100 | Plus |
| lqf-RE | 2496 | CG8532-PE | 1..2493 | 17..2509 | 12465 | 100 | Plus |
| lqf-RD | 2475 | CG8532-PD | 1..2472 | 38..2509 | 12360 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:06:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lqf-RA | 4081 | CG8532-RA | 342..2834 | 17..2509 | 12465 | 100 | Plus |
| lqf-RE | 4303 | CG8532-RE | 564..3056 | 17..2509 | 12465 | 100 | Plus |
| lqf-RD | 3968 | CG8532-RD | 230..2721 | 18..2509 | 12460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:05:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7534235..7534904 | 766..1435 | 3350 | 100 | Plus |
| 3L | 28110227 | 3L | 7533504..7534166 | 104..766 | 3315 | 100 | Plus |
| 3L | 28110227 | 3L | 7535882..7536435 | 1899..2452 | 2770 | 100 | Plus |
| 3L | 28110227 | 3L | 7535195..7535470 | 1526..1801 | 1380 | 100 | Plus |
| 3L | 28110227 | 3L | 7535543..7535644 | 1799..1900 | 510 | 100 | Plus |
| 3L | 28110227 | 3L | 7535042..7535134 | 1434..1526 | 465 | 100 | Plus |
| 3L | 28110227 | 3L | 7533355..7533445 | 18..108 | 455 | 100 | Plus |
| 3L | 28110227 | 3L | 7536976..7537032 | 2453..2509 | 285 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:05:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2532 | 2059..2287 | 138 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6849..7113 | 2090..2362 | 136 | 56.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6735..6814 | 2063..2145 | 120 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6756..6842 | 2063..2149 | 120 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6801..7036 | 1297..1524 | 115 | 53.6 | Plus |
BO33233.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 11:12:07 Download gff for
BO33233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lqf-RA | 342..2834 | 17..2511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:55 Download gff for
BO33233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lqf-RE | 564..3056 | 17..2511 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:05 Download gff for
BO33233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| lqf-RE | 564..3056 | 17..2511 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:05 Download gff for
BO33233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7535196..7535467 | 1527..1798 | 100 | -> | Plus |
| 3L | 7535543..7535644 | 1799..1900 | 100 | -> | Plus |
| 3L | 7535884..7536435 | 1901..2452 | 100 | -> | Plus |
| 3L | 7536976..7537032 | 2453..2511 | 96 | | Plus |
| 3L | 7533353..7533443 | 17..106 | 98 | -> | Plus |
| 3L | 7533507..7534165 | 107..765 | 100 | -> | Plus |
| 3L | 7534235..7534904 | 766..1435 | 100 | -> | Plus |
| 3L | 7535044..7535134 | 1436..1526 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:55 Download gff for
BO33233.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7526453..7526543 | 17..106 | 98 | -> | Plus |
| arm_3L | 7526607..7527265 | 107..765 | 100 | -> | Plus |
| arm_3L | 7527335..7528004 | 766..1435 | 100 | -> | Plus |
| arm_3L | 7528144..7528234 | 1436..1526 | 100 | -> | Plus |
| arm_3L | 7528296..7528567 | 1527..1798 | 100 | -> | Plus |
| arm_3L | 7528643..7528744 | 1799..1900 | 100 | -> | Plus |
| arm_3L | 7528984..7529535 | 1901..2452 | 100 | -> | Plus |
| arm_3L | 7530076..7530132 | 2453..2511 | 96 | | Plus |
BO33233.pep Sequence
Translation from 16 to 2527
> BO33233.pep
MRKQKDDMQVNVAGLRRNIKNLAHNYSDAQVKVREATSNDPWGPSAAIMS
EIAELTYNVVAFSEIMQMIWKRLNDHGKNWRHVYKALILLEYLIKTGSEK
VAQQCKENIFAIQTLREFVYFEEGKDQGTHVREKAKQLVTLLKDDERLKN
ERVKAQKAKERFAQNPSGFGSDGYIDGPSQRDLPPGWQEEPPKSVSELEM
VRPQTAGEEELQLQLAMAMSREEAEQEEAKRRSDDVRLQLALSQSEQDFK
DPNGRPIPAPKKEEQQSHLLDLLDISLGATSISSPPLGAAGGAPTAVVDP
WAMPGPRAPSQLSDPWSGTSSPQVDPWNPSAAPRTILGAGVPMTSAPLGA
GNDAWGARTQSPSVASGSSNEGWLQSNGNANQNGRGATPAGPPAEGWLIK
STAVGALGAAPINHAANNGSSSSDPWLAEPAASAAGGAAAVGLADPWAPG
AASQTGAGALDDPWKALGTGAIKKQSPEFDEFDLITNRNKSEHSNSNASN
NNNASLLDDMDPLSANYGNGGINSSMHPSTGATAKKSIKDAHSFLGENSA
LVNLDNLIKPIAPQTQTGNQPAYNPFSDNVVPPKTNLFQQQQPAVPSINQ
LKQQAPFSVSMNQDPWAPVMGGVSTTSQPKLPPPVRPTSLNLGPSSVGEF
QLLSALSNPIIPIAHIPQPQPNLQVYNNAYQSSSSTNILGKSNIPTNMNS
STSNSTIHSCYASPSPGVDGIRNMDIFTERPYYNSPTAPADDTYMYNSRD
NNNINSNYGTPSLYSSFAASYSSALSDSLAETPGISVAPLGFVADTVMSF
GPSSSSANCKLEQNNNMPWIKPEAATNPFLSASFLDH
BO33233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| lqf-PA | 831 | CG8532-PA | 1..831 | 1..831 | 4344 | 100 | Plus |
| lqf-PE | 831 | CG8532-PE | 1..831 | 1..831 | 4344 | 100 | Plus |
| lqf-PD | 824 | CG8532-PD | 1..824 | 8..831 | 4307 | 100 | Plus |
| lqf-PB | 824 | CG8532-PB | 1..824 | 8..831 | 4307 | 100 | Plus |
| lqf-PJ | 791 | CG8532-PJ | 1..791 | 1..831 | 4086 | 95.2 | Plus |
