BO33238.complete Sequence
2257 bp assembled on 2012-09-19
GenBank Submission: KX795378
> BO33238.complete
GAAGTTATCAGTCGACATGGGTTTCATTGCGGAGCGAAAGCCGCGTGTCA
ACAAGACGTTGATCTCGCTCAAGTTTGTTGTGTTCTTCGTAATAACCGGT
CTTACAGCTTTGCATGTTTTGCATGCCACCAAGCCACTGTTGCTGGGTCT
AAACTTCTCGGAATACCGGACCATTACTATTTTGGCGCCATTCGTCTCCA
TTTTGGGTCCTTTGATCGCTGGTCCCTGGGCAGATCGATTGGCAGCCAAG
AACCCCAATACTTTTGGAAAGACTCTGCGAGTGCTAACTGCCGTCTTCTT
GCTGATCTCGGCCTTCATATATGCCTTTCTGTTTGCCGTGCCGGAAGTTA
CCCGAAGGGGAGAGATACGTGAGCCGTTGGTCAGCTTTGGCTGCGATGAA
ACTGGAGGATTCTTGTTCCAGGAGCGCTGTGGCTCGAACGCCACTTGCAG
TCGGTGGGATCAGAAGGAGGGCAAAATCAACCTGACGCGTTGCACCTACA
GTTGCCAGAATCCCAAGCTCTATGAGCCCCTCTATGTGGCTTGGTTGGCT
GAGGTACCCACGGTGGCTCCTTCAACCGAGCAGAGTTCGGAGTTTGATTA
CGAAGATGAGGGCAGTACTGCGGTAACCGAAAGTTTGCGCACCAGGAGGG
ACGTGGAGAGCTCGGATCCGGCAGATAGTGCTGGTGTGGAGGCCATTAGT
GGTGAGGTTCCTCTTCACCGGTCCATCAGGCAGGTCAAAAAACCCCCCAC
CAAGGTGTACGTCCAGCCTCCTCATGTCTGTCTAACCGAAAGAAACCAGA
ACGGCGAGGATGTGGTGAAGCACTGCCACGCCTACACTGAGGACACCACT
AGTGTGGTGATGGATGCCCTCATGGGCTCAGCGATCAGTCAGGAGGAGCA
CTACGATGACTACGAAGGATGGTGCCAGTACCCACTTGAGGGTTTCCAGT
GCCACATTCCCGAGGAGCAGGTGAATTACATGAAGGACTTCAAGCACTAC
ATGCAGAATGACAGCAACTGCAAGCCCATGATCGAATGCCAAGTGGTGAA
TCCCTACCATGAACAGAGTGTGCTTTCGGACAGCGAGTGTACCAATACCA
CCGGTAGTGTCCAAGATACCCTCGTGGGCTATACGACTATTCGCCTGATT
GGAGACATTTTCCCCATGGCTGCACTGACTCTTTTGAACACGGCAATCGT
GATCGCAGTTCGTGAGACCTCCGAGGGAAGAGGAGAGGTGTGCCGCCAGT
ATGTTTGGGGCGCCATTGGCTATGTAGTGCTCTTCTCGCCGCTGGATCTG
TTCTTCTTCCAGAACGAACCCAACCATGATGCTGCCCTTGTTGCTCTTAT
TATATTTATCGTAAGCTTTGTTTTGGGTGCTGTGGTGCTGCTGTGTGCCA
CACAAATGCCACTGAGCCCGCCGGAGTGGTGGTGGCACACAAAGACCGGA
ATGCTGGTGGTTCCTATGTCTGCCATCCGTCGCTATACTCCTGAGATTTT
GGTGCTCACACTGGTGTCCATTCTTTTTGGCACCTTCTGGAGCAGCATTC
ATAGCTACCTTTGGTGGACTTTCACTGATGTCGATGCCGTCTGCTATTCT
GGCTTGATCCTCATCCTGGTCCTTTTCTTCAATGTGGACAAGTTTATTGA
GTACTGTGGGCACTCGAATATCTTCATCGGTGGCTTGGCCATCTTTGTCA
TTAGGTTTACGGCTTTGAGTGATGCCCAAACAAAGTGGTTAACTGTCATC
ATGGAGACCATCGAGCCGGCTGTAATTGGTCTGATTTGGATTACTATTAT
CCTATATATGCGTCATGCCATGCCAAGGAAATTGACTGCAACTGGACAGG
CCATTGCTGTTTTGGCCTTCTTTGGATTAGGCAAAGGCTTTGGTGCTCTG
ATTGGATTGGCTCGCGATGAGAGGGATCCGAAACTGGAGTTCTGGTCCTG
CACCTACCAATGGCTGGCCATTGTGGCCTGCGTTGTGGCTTTGATCTATT
TTGGAATCTATAATCTGATCCTGGCTCCACGGTGCACCGCCAAGCCACAG
CACTCTGAGGAGTTGATTTCTGGATCCGCATCACAGAACTTTGGTAATAC
CGGAAACGGAAACGGTGCTGGCAACGGAACCGGAAACGGAAATGGCGCTG
GAGCGTCACTAAATGGAAACGGAAACGGGAGCTACTCGCCTTTAAGGGTT
TACCACAACGAGAGGGGGAAGAAGGGACAGTTTAGATACGCAAGCTTTCT
AGACCAT
BO33238.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:03:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP1173-RB | 2226 | CG10121-PB | 1..2223 | 17..2239 | 11115 | 100 | Plus |
| SP1173-RA | 2226 | CG10121-PA | 1..2223 | 17..2239 | 11115 | 100 | Plus |
| SP1173-RD | 2226 | CG10121-PD | 1..2223 | 17..2239 | 11115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:03:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP1173-RB | 3066 | CG10121-RB | 202..2424 | 17..2239 | 11115 | 100 | Plus |
| SP1173-RA | 2832 | CG10121-RA | 340..2562 | 17..2239 | 11115 | 100 | Plus |
| SP1173-RD | 3661 | CG10121-RD | 797..3019 | 17..2239 | 11115 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:03:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6691465..6692305 | 938..98 | 4205 | 100 | Minus |
| 3L | 28110227 | 3L | 6690387..6691171 | 1881..1097 | 3925 | 100 | Minus |
| 3L | 28110227 | 3L | 6689969..6690329 | 2239..1879 | 1805 | 100 | Minus |
| 3L | 28110227 | 3L | 6691232..6691390 | 1096..938 | 795 | 100 | Minus |
| 3L | 28110227 | 3L | 6692370..6692453 | 100..17 | 420 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:03:43 has no hits.
BO33238.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 11:11:54 Download gff for
BO33238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP1173-RA | 317..2539 | 17..2241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:28 Download gff for
BO33238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP1173-RD | 797..3019 | 17..2241 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:21 Download gff for
BO33238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SP1173-RD | 797..3019 | 17..2241 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:21 Download gff for
BO33238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6689967..6690327 | 1881..2241 | 99 | <- | Minus |
| 3L | 6690388..6691171 | 1097..1880 | 100 | <- | Minus |
| 3L | 6691232..6691389 | 939..1096 | 100 | <- | Minus |
| 3L | 6691465..6692304 | 99..938 | 100 | <- | Minus |
| 3L | 6692372..6692453 | 17..98 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:28 Download gff for
BO33238.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6683067..6683427 | 1881..2241 | 99 | <- | Minus |
| arm_3L | 6683488..6684271 | 1097..1880 | 100 | <- | Minus |
| arm_3L | 6684332..6684489 | 939..1096 | 100 | <- | Minus |
| arm_3L | 6684565..6685404 | 99..938 | 100 | <- | Minus |
| arm_3L | 6685472..6685553 | 17..98 | 100 | | Minus |
BO33238.pep Sequence
Translation from 16 to 2257
> BO33238.pep
MGFIAERKPRVNKTLISLKFVVFFVITGLTALHVLHATKPLLLGLNFSEY
RTITILAPFVSILGPLIAGPWADRLAAKNPNTFGKTLRVLTAVFLLISAF
IYAFLFAVPEVTRRGEIREPLVSFGCDETGGFLFQERCGSNATCSRWDQK
EGKINLTRCTYSCQNPKLYEPLYVAWLAEVPTVAPSTEQSSEFDYEDEGS
TAVTESLRTRRDVESSDPADSAGVEAISGEVPLHRSIRQVKKPPTKVYVQ
PPHVCLTERNQNGEDVVKHCHAYTEDTTSVVMDALMGSAISQEEHYDDYE
GWCQYPLEGFQCHIPEEQVNYMKDFKHYMQNDSNCKPMIECQVVNPYHEQ
SVLSDSECTNTTGSVQDTLVGYTTIRLIGDIFPMAALTLLNTAIVIAVRE
TSEGRGEVCRQYVWGAIGYVVLFSPLDLFFFQNEPNHDAALVALIIFIVS
FVLGAVVLLCATQMPLSPPEWWWHTKTGMLVVPMSAIRRYTPEILVLTLV
SILFGTFWSSIHSYLWWTFTDVDAVCYSGLILILVLFFNVDKFIEYCGHS
NIFIGGLAIFVIRFTALSDAQTKWLTVIMETIEPAVIGLIWITIILYMRH
AMPRKLTATGQAIAVLAFFGLGKGFGALIGLARDERDPKLEFWSCTYQWL
AIVACVVALIYFGIYNLILAPRCTAKPQHSEELISGSASQNFGNTGNGNG
AGNGTGNGNGAGASLNGNGNGSYSPLRVYHNERGKKGQFRYASFLDH
BO33238.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SP1173-PB | 741 | CG10121-PB | 1..741 | 1..741 | 3922 | 100 | Plus |
| SP1173-PA | 741 | CG10121-PA | 1..741 | 1..741 | 3922 | 100 | Plus |
| SP1173-PD | 741 | CG10121-PD | 1..741 | 1..741 | 3922 | 100 | Plus |
| SP1173-PC | 741 | CG10121-PC | 1..741 | 1..741 | 3922 | 100 | Plus |
