BO33241.complete Sequence
2038 bp assembled on 2012-09-19
GenBank Submission: KX798842
> BO33241.complete
GAAGTTATCAGTCGACATGGATGTTGGTGGCCAGGAAACCACCTATGAGC
CGCTGGACGGACGTGGTTCCGGGCGTTCGAGGAGCAGTCATTCCACAACC
GGATCCGGCCTGAGGCGTCCAGGCAGCATGGACAGTCCGGAGTTCGATAA
CCGTGCACCCAAGGATCAGAGGCACTCCGTCTACCTGGCCCTACTGGCAG
CGGGCATTGGTTTTGTGTTGCCCTACAATAGTTTCATTATTGCGGCGGAC
TACTGGCAGGCACGATTCCCGGGTCGCCCGGTAGCCCTGGACATGTCGAT
GACATACATCTTCGTTGCCTTCGGCACCGTTTTGATGAACAACATTGTGC
TATCGGTGGCACCGTTCCAGTCGCGAGTGCTCTTTGGCTACATGATATCC
TTCACCACACTGATCTTTGTCGCGGTGTGCGAGGTGGCTTGGCATATGTT
CGCCACAAATACCGCCTATTTGGTGAATATGTCAGCTGTTGCCCTGACCG
CCATCGGATGTACTGTGCAGCAGTCGAGCTTCTATGGATTCGCCTCCATG
CTGCCCAAGCAGTATACCCAGGCGGTGATGGCCGGCGAGAGTATCGCCGG
TTTCCTGGTGTCTTCCAATCGGGTCGTTACCAAATTGCTGATTAACAACG
ATCGCGTGTCCACGGTGATCTTCTTTTTGACCTCAACGCTCTACATACTC
TTCAGCTACCTGTTGCATGTGGCCACCATTAACTCGCCGTTTGTGCGGTT
CCATGTGGAGGCCTGCTCCAAGATCGTTTTGCGGCCGGATGAGCAGGAGA
TTGATGGAGTTCCAAGTAGTACTCGATATGGTGTGCTCTCGATGGACGGT
ACCCACACCACGACCACATCGGTTGGACCTCCAGGCACTGGAAATACCCT
TAGTTTTAGCAATCCCGTCTACGAGCTATCCAACCCGACTGCCGGCGAGA
GTAGCATTGAAGCCCTCGGACAGCTGCCCGAACTTCCGGCCACGCCCCCA
GCTCAGGAGCCTACAACGCCCACGACGGTGGCCTTCAAGGTGGAACACGT
TATCACGCCACGTCGTTGCCGGCCCAGCAAGTTGGGTGACATCCGCGAGG
GATTCGTGACCCGATGGCGAGTGGCCCAGGTGATCTACCCGCACATGGTG
TGCATCGCCTTGGCCTATTGTGTGACCCTCTCGCTGTATCCGGGTATCGA
GGTTGAGGTGCAGTCATGTGCCCTTCGCTCCTGGATGCCCGTGCTGTTGA
TGTTCTGCTTTAATACGTCGGATGTGGTTGGCAAGATACTGGCCGCCAGT
CCGTATCCATGGTCGCGTCGCCAACTGATCCTGCTGTCGGGACTAAGGAT
TGTGCTGGTGCCGCTCCTGCTCCTCTGCTGTGCTCCCCGCCAGCGTCCCG
TGATATCCGGCGAGACGGCGCCGTTTGTCTTCACCATCGCTCTGGGCATC
ACGAATGGATTGGCAGGCAGCCTGCCCATGATGTTGGCACCGGCAAAGGT
GCCGGGAACACTCAAGGAGGTCACTGGCAATATAATGACCCTGTCGTATA
ATGTTGGTCTGACGGTGGGCTCTCTGATTGGATACGTTTTCGAGAGTATG
CTGGGACCGCAGCTGGTGAATCCGTGTCCCACATATCCCTATGTGCCCGC
CTCGATGCTGGAACAGTTCCATGGTCACGGGCATGGACATGGCCATCTAC
CACATCCTCTGCCGCTGACTAGCACCAGCACAATGAGTCCACCAACTACG
GGGGCCACCACATTGGCGCCACTACTGCTCAACACCACGCTGGCTACGCT
TAGTAGCTCTAGCTCCACCACCAGCACCGCCAGTCCGGCACTGGCCACCG
TTATCACAACCACAGCTCTGGCGCTCGCCAGTACGGTGGCCAGCGGAAGT
GCCGAGGTGATTAATGCCACCATATCATCGATCCTGTCCACGGTCAGCAG
TTCGGTGGGCGATATCAGCGACGAGATGACCACAGATCCTCAGACGCCAG
ATGCACTGCTCGAAAATATCGCAAGCTTTCTAGACCAT
BO33241.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:03:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ent3-RC | 2007 | CG11010-PC | 1..2004 | 17..2020 | 10020 | 100 | Plus |
| Ent3-RA | 2007 | CG11010-PA | 1..2004 | 17..2020 | 10020 | 100 | Plus |
| Ent3-RB | 2004 | CG11010-PB | 1..2001 | 17..2020 | 9940 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ent3-RC | 3363 | CG11010-RC | 403..2407 | 16..2020 | 10025 | 100 | Plus |
| Ent3-RA | 2839 | CG11010-RA | 403..2407 | 16..2020 | 10025 | 100 | Plus |
| Ent3-RB | 3360 | CG11010-RB | 403..2404 | 16..2020 | 9945 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:03:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12855486..12856472 | 1034..2020 | 4920 | 99.9 | Plus |
| 3L | 28110227 | 3L | 12854450..12855013 | 230..793 | 2820 | 100 | Plus |
| 3L | 28110227 | 3L | 12855186..12855436 | 792..1042 | 1255 | 100 | Plus |
| 3L | 28110227 | 3L | 12854048..12854263 | 16..231 | 1080 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:03:54 has no hits.
BO33241.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 11:11:56 Download gff for
BO33241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent3-RA | 394..2397 | 17..2022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:33 Download gff for
BO33241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent3-RA | 404..2407 | 17..2022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:24 Download gff for
BO33241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ent3-RA | 404..2407 | 17..2022 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:24 Download gff for
BO33241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12855188..12855433 | 794..1039 | 100 | -> | Plus |
| 3L | 12854049..12854263 | 17..231 | 100 | -> | Plus |
| 3L | 12854452..12855013 | 232..793 | 100 | -> | Plus |
| 3L | 12855492..12856472 | 1040..2022 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:33 Download gff for
BO33241.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12847149..12847363 | 17..231 | 100 | -> | Plus |
| arm_3L | 12847552..12848113 | 232..793 | 100 | -> | Plus |
| arm_3L | 12848288..12848533 | 794..1039 | 100 | -> | Plus |
| arm_3L | 12848592..12849572 | 1040..2022 | 99 | | Plus |
BO33241.pep Sequence
Translation from 16 to 2038
> BO33241.pep
MDVGGQETTYEPLDGRGSGRSRSSHSTTGSGLRRPGSMDSPEFDNRAPKD
QRHSVYLALLAAGIGFVLPYNSFIIAADYWQARFPGRPVALDMSMTYIFV
AFGTVLMNNIVLSVAPFQSRVLFGYMISFTTLIFVAVCEVAWHMFATNTA
YLVNMSAVALTAIGCTVQQSSFYGFASMLPKQYTQAVMAGESIAGFLVSS
NRVVTKLLINNDRVSTVIFFLTSTLYILFSYLLHVATINSPFVRFHVEAC
SKIVLRPDEQEIDGVPSSTRYGVLSMDGTHTTTTSVGPPGTGNTLSFSNP
VYELSNPTAGESSIEALGQLPELPATPPAQEPTTPTTVAFKVEHVITPRR
CRPSKLGDIREGFVTRWRVAQVIYPHMVCIALAYCVTLSLYPGIEVEVQS
CALRSWMPVLLMFCFNTSDVVGKILAASPYPWSRRQLILLSGLRIVLVPL
LLLCCAPRQRPVISGETAPFVFTIALGITNGLAGSLPMMLAPAKVPGTLK
EVTGNIMTLSYNVGLTVGSLIGYVFESMLGPQLVNPCPTYPYVPASMLEQ
FHGHGHGHGHLPHPLPLTSTSTMSPPTTGATTLAPLLLNTTLATLSSSSS
TTSTASPALATVITTTALALASTVASGSAEVINATISSILSTVSSSVGDI
SDEMTTDPQTPDALLENIASFLDH
BO33241.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:38:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ent3-PC | 668 | CG11010-PC | 1..668 | 1..668 | 3423 | 100 | Plus |
| Ent3-PA | 668 | CG11010-PA | 1..668 | 1..668 | 3423 | 100 | Plus |
| Ent3-PB | 667 | CG11010-PB | 1..667 | 1..668 | 3406 | 99.9 | Plus |
| Ent1-PC | 476 | CG11907-PC | 58..292 | 48..272 | 188 | 23.7 | Plus |
| Ent1-PB | 476 | CG11907-PB | 58..292 | 48..272 | 188 | 23.7 | Plus |
| Ent1-PC | 476 | CG11907-PC | 305..476 | 368..529 | 177 | 29.7 | Plus |
