Clone BO33252 Report

Search the DGRC for BO33252

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:332
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptPink1-RA
Protein status:BO33252.pep: Imported from assembly
Sequenced Size:2197

Clone Sequence Records

BO33252.complete Sequence

2197 bp assembled on 2012-09-19

GenBank Submission: KX795911

> BO33252.complete
GAAGTTATCAGTCGACATGTCTGTGAGACTGCTGACCGTGCGACTGATCA
AACATGGTCGCTACATTTTGCGCAGCTATTGTAAACGTGATATACACGCC
AACATTTTGGACCAGAATCAATTGAAGACAAGAAGCAAGCGAGGCTTTCC
CCTACCCTCCACCGCTGCCAATGTGCTGCGGACAACGCCCCAGCAGGCGG
CCAAATCGGTGGTCAATGTAGTGCCCCGCACCATCAACTCCCCGTCGGGA
TCACCGTTTAATGGCAGCGGCAGTAGCCCCACCAGCAGCAGTGGAATCTT
CCGAGTGGGCCAGCATGCGCGCAAATTGTTCATCGACAACATCCTCAGCC
GGGTGACCACCACCTACTCGGAGGATCTGCGCCAGCGCGCTACCCGCAAG
CTATTCTTTGGCGATTCAGCGCCCTTCTTCGCCCTGATTGGCGTTAGTCT
GGCCTCCGGATCGGGTGTGCTCAGCAAGGAGGATGAACTGGAGGGCGTGT
GCTGGGAGATTCGGGAGGCAGCTAGCCGGCTGCAGAACGCCTGGAATCAC
GACGAGATCTCCGATACGCTAGACAGCAAGTTCACCATCGATGACTTGGA
AATCGGTCCGCCCATAGCCAAAGGTTGTGCCGCTGTCGTCTATGCAGCGG
ATTTCAAGAAAGATGTTGCCTCGGATGGTGCATCCCTGCATACCGATGCG
CAGCCGCAGGCAACGCCAGCCTTTGCGCCGAATAGCTGGAGTACCCACGA
GATGATGTCGCCGCTGCAGAACATGTCGCGCTTTGTTCACAACTTTGGCG
GCTCTGTGGACAACGTCTTCCACTACAGCCAGCCATCTGCGGCCAGTGAT
TTCGTGGGCGCCCAGTCGAGGGAACAGGACCAGCGGCACCACGAGCAACA
GCAGCATCAGAATCAGGAACAAGAGCAGCATCAGAACCAGGAGCCCAGCA
GCAGTGCCTTCAATGTGACTTCTCCAGCGAATTCAAACATCAACAGCTCT
GTGGACAGTTATCCACTGGCACTCAAAATGATGTTCAACTACGACATCCA
GAGCAACGCTCTGTCCATACTGCGTGCCATGTACAAGGAGACGGTACCGG
CACGCCAGCGCGGCATGAATGAGGCCGCCGATGAGTGGGAACGTTTGCTG
CAGAATCAAACTGTTCACCTGCCGCGGCATCCGAACATTGTCTGTATGTT
TGGCTTCTTTTGCGACGAGGTGCGCAACTTTCCCGATGGCCATCTCCTGT
ATCCGGTGGCGCAGCCGCAACGCATCAATCCACAGGGCTATGGCCGCAAT
ATGTCGCTGTATCTGCTGATGAAACGCTACGATCACAGTCTTCGCGGCCT
GCTCGATAGCCAGGATCTGAGCACGCGCAATCGCATCCTGCTGCTGGCTC
AAATGCTCGAGGCTGTCAACCATTTGAGCCGTCACGGCGTTGCCCATCGT
GACCTAAAGTCTGATAATGTGCTAATCGAGCTGCAGGACGATGCGGCGCC
GGTGCTAGTGCTCTCCGACTTTGGCTGTTGTCTGGCGGACAAGGTGCATG
GCCTGCGCCTGCCGTACGTTTCGCACGACGTCGACAAGGGCGGCAATGCG
GCGTTGATGGCGCCAGAGATCTTCAATACGATGCCCGGTCCGTTTGCCGT
ACTCAATTATGGCAAGGCCGATCTGTGGGCTTGCGGTGCCCTGGCTTACG
AAATCTTTGGCAACCGCAATCCGTTCTATTCGAGCAGCGGTGGGATGGCG
CGCGAACGCGGTGAGATGACGCTTTCGCTGAGGAACAGCGATTACCGACA
GGACCAATTGCCGCCAATGAGCGATGCTTGCCCGCCGCTGCTGCAACAGC
TGGTCTACAACATCCTCAATCCCAACCCGTCCAAGCGGGTCAGTCCGGAT
ATTGCGGCAAATGTGGTGCAGCTGTTCCTCTGGGCCCCATCCAATTGGCT
TAAGGCGGGCGGCATGCCCAACAGTCCGGAGATCCTACAGTGGCTCCTTT
CGCTGACCACTAAGATTATGTGCGAGGGTCGTCCACAGATGGGCGCCGGA
TTGATGCCAGTGGCCAGCTGTGGCAATAGGCGCGCCTATGTGGAGTACCT
GCTCATATGCAGCTTTCTGGCACGCGCCCGGCTGCGTCGCATTCGCGGCG
CCCTCAACTGGATCCAGAATGTGGTGGCGGCAAGCTTTCTAGACCAT

BO33252.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
Pink1-RI 2166 CG4523-PI 1..2163 17..2179 10815 100 Plus
Pink1-RH 2166 CG4523-PH 1..2163 17..2179 10815 100 Plus
Pink1-RG 2166 CG4523-PG 1..2163 17..2179 10815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:05:43
Subject Length Description Subject Range Query Range Score Percent Strand
Pink1-RI 2411 CG4523-RI 141..2303 17..2179 10815 100 Plus
Pink1-RH 2894 CG4523-RH 628..2790 17..2179 10815 100 Plus
Pink1-RG 2921 CG4523-RG 655..2817 17..2179 10815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:05:38
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6685634..6686648 967..1981 5075 100 Plus
X 23542271 X 6684785..6685571 181..967 3935 100 Plus
X 23542271 X 6686711..6686910 1980..2179 1000 100 Plus
X 23542271 X 6684557..6684721 17..181 825 100 Plus
Blast to na_te.dros performed 2014-11-28 12:05:40
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2341..2460 873..997 216 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6778..6858 871..953 203 73.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6846..6936 873..962 191 69.2 Plus
roo 9092 roo DM_ROO 9092bp 1062..1250 879..1071 190 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6727..6811 871..954 188 70.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2270..2395 822..953 187 63.9 Plus
roo 9092 roo DM_ROO 9092bp 1067..1148 863..944 185 69.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2424 881..997 182 65 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6748..6875 871..997 177 62.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6809..6900 863..950 171 68.5 Plus
roo 9092 roo DM_ROO 9092bp 1087..1163 871..949 165 69.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2463 895..1057 162 59.8 Plus
roo 9092 roo DM_ROO 9092bp 1091..1162 863..934 162 69.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2378..2508 871..997 160 62.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2759..2900 868..1008 158 61.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6790 887..954 153 71 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2783..2853 871..944 137 68.9 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 970..1033 891..952 134 71.9 Plus
roo 9092 roo DM_ROO 9092bp 1108..1179 871..942 126 63.9 Plus

BO33252.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 11:12:06 Download gff for BO33252.complete
Subject Subject Range Query Range Percent Splice Strand
Pink1-RC 624..2786 17..2181 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:53 Download gff for BO33252.complete
Subject Subject Range Query Range Percent Splice Strand
Pink1-RF 604..2766 17..2181 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:58 Download gff for BO33252.complete
Subject Subject Range Query Range Percent Splice Strand
Pink1-RG 655..2817 17..2181 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:58 Download gff for BO33252.complete
Subject Subject Range Query Range Percent Splice Strand
X 6684557..6684721 17..181 100 -> Plus
X 6684786..6685571 182..967 100 -> Plus
X 6685635..6686648 968..1981 100 -> Plus
X 6686713..6686910 1982..2181 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:53 Download gff for BO33252.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6578590..6578754 17..181 100 -> Plus
arm_X 6578819..6579604 182..967 100 -> Plus
arm_X 6579668..6580681 968..1981 100 -> Plus
arm_X 6580746..6580943 1982..2181 99   Plus

BO33252.pep Sequence

Translation from 16 to 2197

> BO33252.pep
MSVRLLTVRLIKHGRYILRSYCKRDIHANILDQNQLKTRSKRGFPLPSTA
ANVLRTTPQQAAKSVVNVVPRTINSPSGSPFNGSGSSPTSSSGIFRVGQH
ARKLFIDNILSRVTTTYSEDLRQRATRKLFFGDSAPFFALIGVSLASGSG
VLSKEDELEGVCWEIREAASRLQNAWNHDEISDTLDSKFTIDDLEIGPPI
AKGCAAVVYAADFKKDVASDGASLHTDAQPQATPAFAPNSWSTHEMMSPL
QNMSRFVHNFGGSVDNVFHYSQPSAASDFVGAQSREQDQRHHEQQQHQNQ
EQEQHQNQEPSSSAFNVTSPANSNINSSVDSYPLALKMMFNYDIQSNALS
ILRAMYKETVPARQRGMNEAADEWERLLQNQTVHLPRHPNIVCMFGFFCD
EVRNFPDGHLLYPVAQPQRINPQGYGRNMSLYLLMKRYDHSLRGLLDSQD
LSTRNRILLLAQMLEAVNHLSRHGVAHRDLKSDNVLIELQDDAAPVLVLS
DFGCCLADKVHGLRLPYVSHDVDKGGNAALMAPEIFNTMPGPFAVLNYGK
ADLWACGALAYEIFGNRNPFYSSSGGMARERGEMTLSLRNSDYRQDQLPP
MSDACPPLLQQLVYNILNPNPSKRVSPDIAANVVQLFLWAPSNWLKAGGM
PNSPEILQWLLSLTTKIMCEGRPQMGAGLMPVASCGNRRAYVEYLLICSF
LARARLRRIRGALNWIQNVVAASFLDH

BO33252.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:45:17
Subject Length Description Subject Range Query Range Score Percent Strand
Pink1-PI 721 CG4523-PI 1..721 1..721 3775 100 Plus
Pink1-PH 721 CG4523-PH 1..721 1..721 3775 100 Plus
Pink1-PG 721 CG4523-PG 1..721 1..721 3775 100 Plus
Pink1-PF 721 CG4523-PF 1..721 1..721 3775 100 Plus
Pink1-PE 721 CG4523-PE 1..721 1..721 3775 100 Plus