BO33252.complete Sequence
2197 bp assembled on 2012-09-19
GenBank Submission: KX795911
> BO33252.complete
GAAGTTATCAGTCGACATGTCTGTGAGACTGCTGACCGTGCGACTGATCA
AACATGGTCGCTACATTTTGCGCAGCTATTGTAAACGTGATATACACGCC
AACATTTTGGACCAGAATCAATTGAAGACAAGAAGCAAGCGAGGCTTTCC
CCTACCCTCCACCGCTGCCAATGTGCTGCGGACAACGCCCCAGCAGGCGG
CCAAATCGGTGGTCAATGTAGTGCCCCGCACCATCAACTCCCCGTCGGGA
TCACCGTTTAATGGCAGCGGCAGTAGCCCCACCAGCAGCAGTGGAATCTT
CCGAGTGGGCCAGCATGCGCGCAAATTGTTCATCGACAACATCCTCAGCC
GGGTGACCACCACCTACTCGGAGGATCTGCGCCAGCGCGCTACCCGCAAG
CTATTCTTTGGCGATTCAGCGCCCTTCTTCGCCCTGATTGGCGTTAGTCT
GGCCTCCGGATCGGGTGTGCTCAGCAAGGAGGATGAACTGGAGGGCGTGT
GCTGGGAGATTCGGGAGGCAGCTAGCCGGCTGCAGAACGCCTGGAATCAC
GACGAGATCTCCGATACGCTAGACAGCAAGTTCACCATCGATGACTTGGA
AATCGGTCCGCCCATAGCCAAAGGTTGTGCCGCTGTCGTCTATGCAGCGG
ATTTCAAGAAAGATGTTGCCTCGGATGGTGCATCCCTGCATACCGATGCG
CAGCCGCAGGCAACGCCAGCCTTTGCGCCGAATAGCTGGAGTACCCACGA
GATGATGTCGCCGCTGCAGAACATGTCGCGCTTTGTTCACAACTTTGGCG
GCTCTGTGGACAACGTCTTCCACTACAGCCAGCCATCTGCGGCCAGTGAT
TTCGTGGGCGCCCAGTCGAGGGAACAGGACCAGCGGCACCACGAGCAACA
GCAGCATCAGAATCAGGAACAAGAGCAGCATCAGAACCAGGAGCCCAGCA
GCAGTGCCTTCAATGTGACTTCTCCAGCGAATTCAAACATCAACAGCTCT
GTGGACAGTTATCCACTGGCACTCAAAATGATGTTCAACTACGACATCCA
GAGCAACGCTCTGTCCATACTGCGTGCCATGTACAAGGAGACGGTACCGG
CACGCCAGCGCGGCATGAATGAGGCCGCCGATGAGTGGGAACGTTTGCTG
CAGAATCAAACTGTTCACCTGCCGCGGCATCCGAACATTGTCTGTATGTT
TGGCTTCTTTTGCGACGAGGTGCGCAACTTTCCCGATGGCCATCTCCTGT
ATCCGGTGGCGCAGCCGCAACGCATCAATCCACAGGGCTATGGCCGCAAT
ATGTCGCTGTATCTGCTGATGAAACGCTACGATCACAGTCTTCGCGGCCT
GCTCGATAGCCAGGATCTGAGCACGCGCAATCGCATCCTGCTGCTGGCTC
AAATGCTCGAGGCTGTCAACCATTTGAGCCGTCACGGCGTTGCCCATCGT
GACCTAAAGTCTGATAATGTGCTAATCGAGCTGCAGGACGATGCGGCGCC
GGTGCTAGTGCTCTCCGACTTTGGCTGTTGTCTGGCGGACAAGGTGCATG
GCCTGCGCCTGCCGTACGTTTCGCACGACGTCGACAAGGGCGGCAATGCG
GCGTTGATGGCGCCAGAGATCTTCAATACGATGCCCGGTCCGTTTGCCGT
ACTCAATTATGGCAAGGCCGATCTGTGGGCTTGCGGTGCCCTGGCTTACG
AAATCTTTGGCAACCGCAATCCGTTCTATTCGAGCAGCGGTGGGATGGCG
CGCGAACGCGGTGAGATGACGCTTTCGCTGAGGAACAGCGATTACCGACA
GGACCAATTGCCGCCAATGAGCGATGCTTGCCCGCCGCTGCTGCAACAGC
TGGTCTACAACATCCTCAATCCCAACCCGTCCAAGCGGGTCAGTCCGGAT
ATTGCGGCAAATGTGGTGCAGCTGTTCCTCTGGGCCCCATCCAATTGGCT
TAAGGCGGGCGGCATGCCCAACAGTCCGGAGATCCTACAGTGGCTCCTTT
CGCTGACCACTAAGATTATGTGCGAGGGTCGTCCACAGATGGGCGCCGGA
TTGATGCCAGTGGCCAGCTGTGGCAATAGGCGCGCCTATGTGGAGTACCT
GCTCATATGCAGCTTTCTGGCACGCGCCCGGCTGCGTCGCATTCGCGGCG
CCCTCAACTGGATCCAGAATGTGGTGGCGGCAAGCTTTCTAGACCAT
BO33252.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pink1-RI | 2166 | CG4523-PI | 1..2163 | 17..2179 | 10815 | 100 | Plus |
Pink1-RH | 2166 | CG4523-PH | 1..2163 | 17..2179 | 10815 | 100 | Plus |
Pink1-RG | 2166 | CG4523-PG | 1..2163 | 17..2179 | 10815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:05:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pink1-RI | 2411 | CG4523-RI | 141..2303 | 17..2179 | 10815 | 100 | Plus |
Pink1-RH | 2894 | CG4523-RH | 628..2790 | 17..2179 | 10815 | 100 | Plus |
Pink1-RG | 2921 | CG4523-RG | 655..2817 | 17..2179 | 10815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:05:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6685634..6686648 | 967..1981 | 5075 | 100 | Plus |
X | 23542271 | X | 6684785..6685571 | 181..967 | 3935 | 100 | Plus |
X | 23542271 | X | 6686711..6686910 | 1980..2179 | 1000 | 100 | Plus |
X | 23542271 | X | 6684557..6684721 | 17..181 | 825 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 12:05:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2341..2460 | 873..997 | 216 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6858 | 871..953 | 203 | 73.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6846..6936 | 873..962 | 191 | 69.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1062..1250 | 879..1071 | 190 | 58.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6811 | 871..954 | 188 | 70.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2270..2395 | 822..953 | 187 | 63.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1067..1148 | 863..944 | 185 | 69.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2424 | 881..997 | 182 | 65 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6748..6875 | 871..997 | 177 | 62.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6809..6900 | 863..950 | 171 | 68.5 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1087..1163 | 871..949 | 165 | 69.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2463 | 895..1057 | 162 | 59.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1091..1162 | 863..934 | 162 | 69.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2378..2508 | 871..997 | 160 | 62.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2759..2900 | 868..1008 | 158 | 61.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6790 | 887..954 | 153 | 71 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2783..2853 | 871..944 | 137 | 68.9 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 970..1033 | 891..952 | 134 | 71.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1108..1179 | 871..942 | 126 | 63.9 | Plus |
BO33252.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 11:12:06 Download gff for
BO33252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pink1-RC | 624..2786 | 17..2181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:53 Download gff for
BO33252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pink1-RF | 604..2766 | 17..2181 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:58 Download gff for
BO33252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Pink1-RG | 655..2817 | 17..2181 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:58 Download gff for
BO33252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6684557..6684721 | 17..181 | 100 | -> | Plus |
X | 6684786..6685571 | 182..967 | 100 | -> | Plus |
X | 6685635..6686648 | 968..1981 | 100 | -> | Plus |
X | 6686713..6686910 | 1982..2181 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:53 Download gff for
BO33252.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6578590..6578754 | 17..181 | 100 | -> | Plus |
arm_X | 6578819..6579604 | 182..967 | 100 | -> | Plus |
arm_X | 6579668..6580681 | 968..1981 | 100 | -> | Plus |
arm_X | 6580746..6580943 | 1982..2181 | 99 | | Plus |
BO33252.pep Sequence
Translation from 16 to 2197
> BO33252.pep
MSVRLLTVRLIKHGRYILRSYCKRDIHANILDQNQLKTRSKRGFPLPSTA
ANVLRTTPQQAAKSVVNVVPRTINSPSGSPFNGSGSSPTSSSGIFRVGQH
ARKLFIDNILSRVTTTYSEDLRQRATRKLFFGDSAPFFALIGVSLASGSG
VLSKEDELEGVCWEIREAASRLQNAWNHDEISDTLDSKFTIDDLEIGPPI
AKGCAAVVYAADFKKDVASDGASLHTDAQPQATPAFAPNSWSTHEMMSPL
QNMSRFVHNFGGSVDNVFHYSQPSAASDFVGAQSREQDQRHHEQQQHQNQ
EQEQHQNQEPSSSAFNVTSPANSNINSSVDSYPLALKMMFNYDIQSNALS
ILRAMYKETVPARQRGMNEAADEWERLLQNQTVHLPRHPNIVCMFGFFCD
EVRNFPDGHLLYPVAQPQRINPQGYGRNMSLYLLMKRYDHSLRGLLDSQD
LSTRNRILLLAQMLEAVNHLSRHGVAHRDLKSDNVLIELQDDAAPVLVLS
DFGCCLADKVHGLRLPYVSHDVDKGGNAALMAPEIFNTMPGPFAVLNYGK
ADLWACGALAYEIFGNRNPFYSSSGGMARERGEMTLSLRNSDYRQDQLPP
MSDACPPLLQQLVYNILNPNPSKRVSPDIAANVVQLFLWAPSNWLKAGGM
PNSPEILQWLLSLTTKIMCEGRPQMGAGLMPVASCGNRRAYVEYLLICSF
LARARLRRIRGALNWIQNVVAASFLDH
BO33252.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:45:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Pink1-PI | 721 | CG4523-PI | 1..721 | 1..721 | 3775 | 100 | Plus |
Pink1-PH | 721 | CG4523-PH | 1..721 | 1..721 | 3775 | 100 | Plus |
Pink1-PG | 721 | CG4523-PG | 1..721 | 1..721 | 3775 | 100 | Plus |
Pink1-PF | 721 | CG4523-PF | 1..721 | 1..721 | 3775 | 100 | Plus |
Pink1-PE | 721 | CG4523-PE | 1..721 | 1..721 | 3775 | 100 | Plus |