BO33258.complete Sequence
1957 bp assembled on 2012-09-19
GenBank Submission: KX796826
> BO33258.complete
GAAGTTATCAGTCGACATGCCGCTGCCCAAACGATCCATAGAACCCGTGC
ATGTGGCCCGCTCCGTGTATCAGCAGGATGAGCTGCAATCCGTGGAGCTG
GAGACGGTCACCAACACCACGCTGACGAACATCATTCGCCAGCTGTCCTC
GCTGTCCAAGCACGCAGAGGATGTGTTCGGTGAACTGGCCCGCGACGTGG
GCAACATCGGGGATCGAGCTAACTCCCTGCAGGCGCGCATCGATCGCCTA
GCTATCAAAGTTACCCAGCTGGACAGCACAGTTGAGGAGGTGCCCTTGAC
GGACATTACCCGAAAGAAGGCCTTCAAGTCGGCCAAGGTTTTTGATCAAC
AGATCTTCTCGCGCGCCACCATGCCGGCACCAATGATGGACACATATGCC
CAGTGCGACAAACCGCCGCCCCTCGACAAGCTTAATGTCTATCGAGACGA
TGGCAAGGATGGTCTTAAGTTCTACACGGATCCGAACTACTTCTTTGAGT
TGTGGCGACAGGAGATGCTGAAGGATACCGAACGTGTGATGCACGACAAG
GGCAAGAAGCTGAACAGACCGCGGCAGGATGGCGGTGCCGGCGGAGCTGC
TGGACGTGGCAATAAGAAACAGAAGACCAAAATAAGGGTGCCGCACAATA
CGCGCGAACAGCAGCGACAACGTGCACTGGTGCACGGCGAAACATTGATG
CCCAACAACGTCATCTACCGCACACCGAATTCCATGGTCAACGAAGAAGC
CGGATACGGAATTCAGCTAGTCAAAATACAGACTGTGGGCGAGGCTGACA
TCGATTTGCGGCATAGCACTCTCGATGCGCACCACCAAGTTGTCGATATG
GGAGTGTACGATACACGTCCGCCACGTCCTAACTCGATCGAATTGAACCG
AAGCTATCAGTCGGAGCAGATCGATGGTAGCACCTACGAGCAGCTTCCAC
CGCAGATGGGTAATCAGTATGCTGCCACCTTCGGCAACGGCATGGGTGGC
CCCCAGCAGATGCACATGCAGCATCAGCAGATGTATGACGCCGGAATGTA
TCAGTCGCATGCGCTGTACGGCCAAACTGGACAGGGAGTGATGTCGCCGG
AGCCCATCTACGGACCGGGAACACCGTCGCGTAACAAACCGCGTCCGTCG
CAGCCGCCACCGGCTCCGCCATCGAATGGCAGCGGTGGTGGTACGCCCAC
AGCCTCCAATGCCAACACTCCGACAAGGGGCAGAAGTATGTCGACCAGTC
GGGATGCCTTGCCACCGCCTCCACCAGTTCCAGACGTCATTTCACCAATG
TCTGGCATGAACGGAGTCAACAGCGGGCATATGGCGGCCAAACTGCTTGG
CCGGGCGAACAGTTCGTCGGGAGCTGGATCTCCCAACAGCGTCCAGAATG
CCAATGATATGGTCATGACGCAACTGAGCAATACTTTCCACAGCATCGGT
ATGACGGGCAATCAACTGAACTCCCTTAGCGACTTGCCGCCACCGCCGCC
GGTTCCAGATCAGCACTCGCCTAAGATGTCGCCACCTAATGCCGCGCCAC
CACCGCCGCCGCCACCGCCTCCAGTCGAGGAAGGCATGGGCAGTGGCAAC
CAACACACGCTGCGCCCGCATCAAATTCTTCCCAAATCACTGGCCAATGG
CGAAATGCAGCAGCCCGGCCAACAAAATGGTGTGCCTCACATTGTCGCAC
CCAAGAAGATGCTGCCTCCATTCCATGACCCACGCAACGACTTGATGAAG
GCCATTCGAGATGGTATTACTCTACGTAAAGTTGAAAAGTCAGAGCAAAA
GGAAATTGAACGAAACGCGGCGCCATTGGATGTGGCTTCAATCTTGGCCA
GACGTGTGGCTATCGAATTATCCGAGTCCGAGGATTCGGATAGCGAAGAC
GACAGCGAGGGCTGGATGGAACCGAACGAAACATCGGCTGCAAGCTTTCT
AGACCAT
BO33258.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SCAR-RB | 1926 | CG4636-PB | 1..1923 | 17..1939 | 9615 | 100 | Plus |
| SCAR-RF | 1944 | CG4636-PF | 1..1941 | 17..1939 | 9400 | 99.1 | Plus |
| SCAR-RD | 2025 | CG4636-PD | 928..2022 | 845..1939 | 5475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:04:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SCAR-RB | 2815 | CG4636-RB | 261..2184 | 16..1939 | 9620 | 100 | Plus |
| SCAR-RF | 3037 | CG4636-RF | 363..2304 | 16..1939 | 9405 | 99.1 | Plus |
| SCAR-RD | 3118 | CG4636-RD | 1291..2385 | 845..1939 | 5475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:03:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10977961..10978706 | 16..761 | 3730 | 100 | Plus |
| 2L | 23513712 | 2L | 10980444..10981112 | 845..1513 | 3345 | 100 | Plus |
| 2L | 23513712 | 2L | 10981176..10981431 | 1511..1766 | 1280 | 100 | Plus |
| 2L | 23513712 | 2L | 10981486..10981662 | 1763..1939 | 885 | 100 | Plus |
| 2L | 23513712 | 2L | 10978880..10978963 | 762..845 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:04:00 has no hits.
BO33258.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 11:11:57 Download gff for
BO33258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RB | 254..2176 | 17..1941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:35 Download gff for
BO33258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RB | 262..2184 | 17..1941 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:25 Download gff for
BO33258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SCAR-RB | 262..2184 | 17..1941 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:25 Download gff for
BO33258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10981179..10981428 | 1514..1763 | 100 | -> | Plus |
| 2L | 10981487..10981662 | 1764..1941 | 98 | | Plus |
| 2L | 10977962..10978706 | 17..761 | 100 | -> | Plus |
| 2L | 10978880..10978963 | 762..845 | 100 | -> | Plus |
| 2L | 10980445..10981112 | 846..1513 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:35 Download gff for
BO33258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10977962..10978706 | 17..761 | 100 | -> | Plus |
| arm_2L | 10978880..10978963 | 762..845 | 100 | -> | Plus |
| arm_2L | 10980445..10981112 | 846..1513 | 100 | -> | Plus |
| arm_2L | 10981179..10981428 | 1514..1763 | 100 | -> | Plus |
| arm_2L | 10981487..10981662 | 1764..1941 | 98 | | Plus |
BO33258.pep Sequence
Translation from 16 to 1957
> BO33258.pep
MPLPKRSIEPVHVARSVYQQDELQSVELETVTNTTLTNIIRQLSSLSKHA
EDVFGELARDVGNIGDRANSLQARIDRLAIKVTQLDSTVEEVPLTDITRK
KAFKSAKVFDQQIFSRATMPAPMMDTYAQCDKPPPLDKLNVYRDDGKDGL
KFYTDPNYFFELWRQEMLKDTERVMHDKGKKLNRPRQDGGAGGAAGRGNK
KQKTKIRVPHNTREQQRQRALVHGETLMPNNVIYRTPNSMVNEEAGYGIQ
LVKIQTVGEADIDLRHSTLDAHHQVVDMGVYDTRPPRPNSIELNRSYQSE
QIDGSTYEQLPPQMGNQYAATFGNGMGGPQQMHMQHQQMYDAGMYQSHAL
YGQTGQGVMSPEPIYGPGTPSRNKPRPSQPPPAPPSNGSGGGTPTASNAN
TPTRGRSMSTSRDALPPPPPVPDVISPMSGMNGVNSGHMAAKLLGRANSS
SGAGSPNSVQNANDMVMTQLSNTFHSIGMTGNQLNSLSDLPPPPPVPDQH
SPKMSPPNAAPPPPPPPPPVEEGMGSGNQHTLRPHQILPKSLANGEMQQP
GQQNGVPHIVAPKKMLPPFHDPRNDLMKAIRDGITLRKVEKSEQKEIERN
AAPLDVASILARRVAIELSESEDSDSEDDSEGWMEPNETSAASFLDH
BO33258.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:39:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SCAR-PB | 641 | CG4636-PB | 1..641 | 1..641 | 3385 | 100 | Plus |
| SCAR-PF | 647 | CG4636-PF | 1..647 | 1..641 | 3368 | 99.1 | Plus |
| SCAR-PD | 674 | CG4636-PD | 1..674 | 1..641 | 3341 | 95.1 | Plus |
| SCAR-PC | 640 | CG4636-PC | 1..640 | 1..641 | 3223 | 95.8 | Plus |
| SCAR-PE | 632 | CG4636-PE | 1..618 | 1..646 | 3207 | 94.9 | Plus |
