BO33287.complete Sequence
1513 bp assembled on 2012-08-22
GenBank Submission: KX797658
> BO33287.complete
GAAGTTATCAGTGGACATGCAGACGACGACAAGTCAGCGGCCAGTAACGC
CTGGCACTCCAGACTCGGCGCATATCGTAATCGGCGCCGCGGGATTCGTG
GCACACGAGAGACGCCAGCCCGGAAAGACCCTGATGAATTGCTTTCGCGA
TCGCTCCACGACGTCGTCGTCATCGTCGCAGGCCCAACACGCCTATGTGC
GCGGCCACAGCGTCACCTCGAGCACTCTGTTTCGCCTGGAGGGCAGTGGT
GGCTCCAATTGCACCTTGGACAAGGCGGGCAAGCAGGATACCGGGCGGCC
CGAGGCGGTCGTCCTACTCAGAGAGCTGAAAACCAGACCCAACAAGCTGG
CTCTGCTCAAGAGCAGCAGCAGCAAGGATCTGACCCGCCTGTTCCTGGAC
GATTCAACCAACACAGCCGTGCTGGTGTCCAACACCAGTATAGATGTCTG
CTCCTCAAATTCCAGCTCTGGCGGCAGTCCGGCGGTGGGCAGGTCCAAGT
CCGGCAGGGATCGCCGCAATGGACTGGAGTGCTGCAGCAGCTGCTCCAAG
CGTTGGCACGATCTCAAGCAGCGTATGCACACTCTGGAGCAGGATCTGCT
CGTCCAGACCACATACAGCCAAGAGCTGGAGCAGAAGGTGGGCGAGATGA
GTCGCCAGTTGACGGAACTGCTTCAGGAACGCGACAGGGAGAGGGATAAG
GATAAGGCGCGCTTTGCAGCCGCAGGCGGCGTTGCTGCGCCTGGCAAGCG
GACTGCTCACGGCAGTCCCAATGTCCGACCCTCGCGCCTGGTGGCCTGGA
TGAACCTGTCCAACTGGTTCAAGAGCAGACCCAGCGTGGAAACGCTGCGG
GAACAGCGCATCTTCTTCGACGAGCCCTGCTTCGATACGGAACTGGAGAT
GGTCCTCAAGCACGACCAGCACCGCACTGTGCCGCGCATCGTTGTGGATT
GCTGCGATCTAATCGAGCAAAAGTACCGCAGATCTACGCAGCCCATCGAG
GGCATCTATCGGCAGTGCGGCGACTACAATAAAATCCAAACGCTGCGCTT
CAGCATCGACGCCAACGACTACGATTCACTGCGTCAGCCGGACGTCGATA
TACACACGTTGACCGGTGTGCTTAAGCTCTTCCTGCGCGAAATCAAGAGT
CCGTTGGTCAGGGTCAACGAGGCCAAGACCTTCATTGGACAGCCCAATCA
GTGGTTGTTAACCGATCTGTCTGCGAAGTTGGACTCCCTGAAAAGACTGA
TTCGTTCGCTGCCGGAGAGCAACCGGGACACCATGGACTACATCTTCGGT
CACTTCAATAGAATAACCAAGGTGCCGCTGCAGCAGATCAGCGCTGAAAC
GCTGTCCATATCGGTGACGCCGTCGATCTTTCACACGGTGCCACAGGGCG
TCCACATGCAGGACATCCAGCAACTTTTGCGCGAGGGCGAAACGCTGGCC
GACTGCGTCAAGCTGATGATCGAGTACCAGGGGCGCATATTCGAGGCAAG
CTTTCTAGACCAT
BO33287.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP16F-RF | 1482 | CG7122-PF | 1..1479 | 17..1495 | 7395 | 100 | Plus |
RhoGAP16F-RD | 1482 | CG7122-PD | 1..1479 | 17..1495 | 7395 | 100 | Plus |
RhoGAP16F-RC | 1482 | CG7122-PC | 1..1479 | 17..1495 | 7395 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP16F-RF | 3098 | CG7122-RF | 1080..2559 | 16..1495 | 7400 | 100 | Plus |
RhoGAP16F-RD | 2424 | CG7122-RD | 406..1885 | 16..1495 | 7400 | 100 | Plus |
RhoGAP16F-RC | 2363 | CG7122-RC | 345..1824 | 16..1495 | 7400 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:20:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 18095264..18096453 | 16..1205 | 5950 | 100 | Plus |
X | 23542271 | X | 18096689..18096874 | 1310..1495 | 930 | 100 | Plus |
X | 23542271 | X | 18096516..18096621 | 1206..1311 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:20:59 has no hits.
BO33287.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:14 Download gff for
BO33287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP16F-RB | 590..2068 | 17..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:00 Download gff for
BO33287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP16F-RC | 346..1824 | 17..1497 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:23 Download gff for
BO33287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RhoGAP16F-RC | 346..1824 | 17..1497 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:23 Download gff for
BO33287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 18095265..18096453 | 17..1205 | 100 | -> | Plus |
X | 18096516..18096621 | 1206..1311 | 100 | -> | Plus |
X | 18096691..18096874 | 1312..1497 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:00 Download gff for
BO33287.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 17989298..17990486 | 17..1205 | 100 | -> | Plus |
arm_X | 17990549..17990654 | 1206..1311 | 100 | -> | Plus |
arm_X | 17990724..17990907 | 1312..1497 | 98 | | Plus |
BO33287.pep Sequence
Translation from 16 to 1513
> BO33287.pep
MQTTTSQRPVTPGTPDSAHIVIGAAGFVAHERRQPGKTLMNCFRDRSTTS
SSSSQAQHAYVRGHSVTSSTLFRLEGSGGSNCTLDKAGKQDTGRPEAVVL
LRELKTRPNKLALLKSSSSKDLTRLFLDDSTNTAVLVSNTSIDVCSSNSS
SGGSPAVGRSKSGRDRRNGLECCSSCSKRWHDLKQRMHTLEQDLLVQTTY
SQELEQKVGEMSRQLTELLQERDRERDKDKARFAAAGGVAAPGKRTAHGS
PNVRPSRLVAWMNLSNWFKSRPSVETLREQRIFFDEPCFDTELEMVLKHD
QHRTVPRIVVDCCDLIEQKYRRSTQPIEGIYRQCGDYNKIQTLRFSIDAN
DYDSLRQPDVDIHTLTGVLKLFLREIKSPLVRVNEAKTFIGQPNQWLLTD
LSAKLDSLKRLIRSLPESNRDTMDYIFGHFNRITKVPLQQISAETLSISV
TPSIFHTVPQGVHMQDIQQLLREGETLADCVKLMIEYQGRIFEASFLDH
BO33287.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RhoGAP16F-PF | 493 | CG7122-PF | 1..493 | 1..493 | 2546 | 100 | Plus |
RhoGAP16F-PD | 493 | CG7122-PD | 1..493 | 1..493 | 2546 | 100 | Plus |
RhoGAP16F-PC | 493 | CG7122-PC | 1..493 | 1..493 | 2546 | 100 | Plus |
RhoGAP16F-PB | 493 | CG7122-PB | 1..493 | 1..493 | 2546 | 100 | Plus |
RhoGAP16F-PE | 581 | CG7122-PE | 1..493 | 1..493 | 2543 | 99.8 | Plus |