Clone BO33287 Report

Search the DGRC for BO33287

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:332
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptRhoGAP16F-RA
Protein status:BO33287.pep: Imported from assembly
Sequenced Size:1513

Clone Sequence Records

BO33287.complete Sequence

1513 bp assembled on 2012-08-22

GenBank Submission: KX797658

> BO33287.complete
GAAGTTATCAGTGGACATGCAGACGACGACAAGTCAGCGGCCAGTAACGC
CTGGCACTCCAGACTCGGCGCATATCGTAATCGGCGCCGCGGGATTCGTG
GCACACGAGAGACGCCAGCCCGGAAAGACCCTGATGAATTGCTTTCGCGA
TCGCTCCACGACGTCGTCGTCATCGTCGCAGGCCCAACACGCCTATGTGC
GCGGCCACAGCGTCACCTCGAGCACTCTGTTTCGCCTGGAGGGCAGTGGT
GGCTCCAATTGCACCTTGGACAAGGCGGGCAAGCAGGATACCGGGCGGCC
CGAGGCGGTCGTCCTACTCAGAGAGCTGAAAACCAGACCCAACAAGCTGG
CTCTGCTCAAGAGCAGCAGCAGCAAGGATCTGACCCGCCTGTTCCTGGAC
GATTCAACCAACACAGCCGTGCTGGTGTCCAACACCAGTATAGATGTCTG
CTCCTCAAATTCCAGCTCTGGCGGCAGTCCGGCGGTGGGCAGGTCCAAGT
CCGGCAGGGATCGCCGCAATGGACTGGAGTGCTGCAGCAGCTGCTCCAAG
CGTTGGCACGATCTCAAGCAGCGTATGCACACTCTGGAGCAGGATCTGCT
CGTCCAGACCACATACAGCCAAGAGCTGGAGCAGAAGGTGGGCGAGATGA
GTCGCCAGTTGACGGAACTGCTTCAGGAACGCGACAGGGAGAGGGATAAG
GATAAGGCGCGCTTTGCAGCCGCAGGCGGCGTTGCTGCGCCTGGCAAGCG
GACTGCTCACGGCAGTCCCAATGTCCGACCCTCGCGCCTGGTGGCCTGGA
TGAACCTGTCCAACTGGTTCAAGAGCAGACCCAGCGTGGAAACGCTGCGG
GAACAGCGCATCTTCTTCGACGAGCCCTGCTTCGATACGGAACTGGAGAT
GGTCCTCAAGCACGACCAGCACCGCACTGTGCCGCGCATCGTTGTGGATT
GCTGCGATCTAATCGAGCAAAAGTACCGCAGATCTACGCAGCCCATCGAG
GGCATCTATCGGCAGTGCGGCGACTACAATAAAATCCAAACGCTGCGCTT
CAGCATCGACGCCAACGACTACGATTCACTGCGTCAGCCGGACGTCGATA
TACACACGTTGACCGGTGTGCTTAAGCTCTTCCTGCGCGAAATCAAGAGT
CCGTTGGTCAGGGTCAACGAGGCCAAGACCTTCATTGGACAGCCCAATCA
GTGGTTGTTAACCGATCTGTCTGCGAAGTTGGACTCCCTGAAAAGACTGA
TTCGTTCGCTGCCGGAGAGCAACCGGGACACCATGGACTACATCTTCGGT
CACTTCAATAGAATAACCAAGGTGCCGCTGCAGCAGATCAGCGCTGAAAC
GCTGTCCATATCGGTGACGCCGTCGATCTTTCACACGGTGCCACAGGGCG
TCCACATGCAGGACATCCAGCAACTTTTGCGCGAGGGCGAAACGCTGGCC
GACTGCGTCAAGCTGATGATCGAGTACCAGGGGCGCATATTCGAGGCAAG
CTTTCTAGACCAT

BO33287.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP16F-RF 1482 CG7122-PF 1..1479 17..1495 7395 100 Plus
RhoGAP16F-RD 1482 CG7122-PD 1..1479 17..1495 7395 100 Plus
RhoGAP16F-RC 1482 CG7122-PC 1..1479 17..1495 7395 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP16F-RF 3098 CG7122-RF 1080..2559 16..1495 7400 100 Plus
RhoGAP16F-RD 2424 CG7122-RD 406..1885 16..1495 7400 100 Plus
RhoGAP16F-RC 2363 CG7122-RC 345..1824 16..1495 7400 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:20:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 18095264..18096453 16..1205 5950 100 Plus
X 23542271 X 18096689..18096874 1310..1495 930 100 Plus
X 23542271 X 18096516..18096621 1206..1311 530 100 Plus
Blast to na_te.dros performed on 2014-11-28 12:20:59 has no hits.

BO33287.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:14 Download gff for BO33287.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP16F-RB 590..2068 17..1497 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:00 Download gff for BO33287.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP16F-RC 346..1824 17..1497 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:02:23 Download gff for BO33287.complete
Subject Subject Range Query Range Percent Splice Strand
RhoGAP16F-RC 346..1824 17..1497 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:02:23 Download gff for BO33287.complete
Subject Subject Range Query Range Percent Splice Strand
X 18095265..18096453 17..1205 100 -> Plus
X 18096516..18096621 1206..1311 100 -> Plus
X 18096691..18096874 1312..1497 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:00 Download gff for BO33287.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 17989298..17990486 17..1205 100 -> Plus
arm_X 17990549..17990654 1206..1311 100 -> Plus
arm_X 17990724..17990907 1312..1497 98   Plus

BO33287.pep Sequence

Translation from 16 to 1513

> BO33287.pep
MQTTTSQRPVTPGTPDSAHIVIGAAGFVAHERRQPGKTLMNCFRDRSTTS
SSSSQAQHAYVRGHSVTSSTLFRLEGSGGSNCTLDKAGKQDTGRPEAVVL
LRELKTRPNKLALLKSSSSKDLTRLFLDDSTNTAVLVSNTSIDVCSSNSS
SGGSPAVGRSKSGRDRRNGLECCSSCSKRWHDLKQRMHTLEQDLLVQTTY
SQELEQKVGEMSRQLTELLQERDRERDKDKARFAAAGGVAAPGKRTAHGS
PNVRPSRLVAWMNLSNWFKSRPSVETLREQRIFFDEPCFDTELEMVLKHD
QHRTVPRIVVDCCDLIEQKYRRSTQPIEGIYRQCGDYNKIQTLRFSIDAN
DYDSLRQPDVDIHTLTGVLKLFLREIKSPLVRVNEAKTFIGQPNQWLLTD
LSAKLDSLKRLIRSLPESNRDTMDYIFGHFNRITKVPLQQISAETLSISV
TPSIFHTVPQGVHMQDIQQLLREGETLADCVKLMIEYQGRIFEASFLDH

BO33287.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:39
Subject Length Description Subject Range Query Range Score Percent Strand
RhoGAP16F-PF 493 CG7122-PF 1..493 1..493 2546 100 Plus
RhoGAP16F-PD 493 CG7122-PD 1..493 1..493 2546 100 Plus
RhoGAP16F-PC 493 CG7122-PC 1..493 1..493 2546 100 Plus
RhoGAP16F-PB 493 CG7122-PB 1..493 1..493 2546 100 Plus
RhoGAP16F-PE 581 CG7122-PE 1..493 1..493 2543 99.8 Plus