BO33301.complete Sequence
1228 bp assembled on 2012-10-15
GenBank Submission: KX798195
> BO33301.complete
GAAGTTATCAGTCGACATGAGCTGTTTCTTCCGCTTATTTGCCAGCCCCG
GCAAAATGGACGGCAATCCACTTTCGGAAATAGAAGAAATTGTCAAGACG
ACAACGGAGCAGCACGAGTCCAACAGTCGCGTGGATGGAGGCGGAGGTGT
GGAAAATGCCAGCACCAACGGCCATGGTCGATCCCACGACAACAATGATG
AGAGCCACACCGCTGTGTCTGACAAGGCTGCAGCCCTCAAAAAGCGGCAA
TGCGTCTTTGCGGAGCTGATGTCCACGGAGGAGGCATATGTACAGGATCT
GCATGAGATCGTCAATGGTTACATGACAGAGATTAACAACACGAACAGTG
ATATACCCATGCCTGAGGACCTGAAGGGTGGTAAAATGAAGTTGGTCTTC
AACAATATTAAAGACATCTACGAGTGGCACAGGGACTTCTTCCTGAGAGC
CCTGCGCAACTGCCAAAAATCGCCGGCGGACCTGGGTCCGCTCATCAAGC
GGTCAGCCACCAAGTTCGCTCTGTACTACACCTATTGCAGCAACAAACCG
CTGTCCGAATACATAGTCAGTGCCCATTATCAGTATTTCGATAGCATACG
TCAGAAGCTGGGACATCGTCTGGATCTGAGTAACTTGATCATCAAGCCGG
TGCAGCGAATCACTAAATACGAGCTACTCATCAAGGAGATCATCAAGGCC
ACCGAGGGAGCCGGGCTTTACAAGGAGGTGCCCATGCTGCAGGAGGCCTA
CCAACAGATGAAGGTCGTCGTCAAGACGGTCAACGATATGATGGTGGTGC
TGCGCAGCTTGCAGGACTTCGATGGGGAGATAACCGCCCAAGGCAGCCTG
TTGATGCAGGGACCCATGAACTGCGTGGTGGATGCGGCACAGAAGCACCG
CGAGCTTCAGGTGTTCCTCTTCCAGCAGATCATCATCTTTGCGGATATTG
AGAAGACCAAGAACCAGTATGCCAGTCCCATATTCAAATACAGATCGCAC
ATACAGCTCAATCACATGCAAATGAAGGAACTGGGCGACTGCCGCTTTCA
AATAAGGTCGACTGACCCCAAGATCCCAGAGATGACGATCATCTGCCAGG
CGGCGTCGCAGGAGAACTACGCGGGGTGGCGCGATATGCTAAACAAGATA
CTGCAGCAGCAGAACGACCTGATCTTCATGCTCTCCAATCCCCTGTCAAC
CAAAAACAAAGCAAGCTTTCTAGACCAT
BO33301.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:36:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trio-RE | 1197 | CG18214-PE | 1..1194 | 17..1210 | 5970 | 100 | Plus |
| trio-RF | 1977 | CG18214-PF | 805..1974 | 41..1210 | 5850 | 100 | Plus |
| trio-RB | 1977 | CG18214-PB | 805..1974 | 41..1210 | 5850 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:36:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trio-RE | 3466 | CG18214-RE | 166..1360 | 16..1210 | 5975 | 100 | Plus |
| trio-RF | 2959 | CG18214-RF | 912..2081 | 41..1210 | 5850 | 100 | Plus |
| trio-RB | 4187 | CG18214-RB | 912..2081 | 41..1210 | 5850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:36:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 998351..998731 | 1006..626 | 1905 | 100 | Minus |
| 3L | 28110227 | 3L | 998088..998294 | 1210..1004 | 1035 | 100 | Minus |
| 3L | 28110227 | 3L | 998824..999013 | 625..436 | 950 | 100 | Minus |
| 3L | 28110227 | 3L | 999256..999377 | 322..201 | 595 | 99.2 | Minus |
| 3L | 28110227 | 3L | 999079..999196 | 435..318 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 999447..999543 | 202..106 | 485 | 100 | Minus |
| 3L | 28110227 | 3L | 999616..999682 | 107..41 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:36:25 has no hits.
BO33301.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 09:58:49 Download gff for
BO33301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trio-RE | 167..1351 | 17..1201 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:39 Download gff for
BO33301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trio-RE | 167..1351 | 17..1201 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:07:43 Download gff for
BO33301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| trio-RE | 167..1351 | 17..1201 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:07:43 Download gff for
BO33301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 998097..998291 | 1007..1201 | 100 | <- | Minus |
| 3L | 998351..998731 | 626..1006 | 100 | <- | Minus |
| 3L | 998824..999013 | 436..625 | 100 | <- | Minus |
| 3L | 999079..999195 | 319..435 | 100 | <- | Minus |
| 3L | 999260..999375 | 203..318 | 100 | <- | Minus |
| 3L | 999447..999542 | 107..202 | 100 | <- | Minus |
| 3L | 999617..999682 | 41..106 | 100 | <- | Minus |
| 3L | 1000378..1000401 | 17..40 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:39 Download gff for
BO33301.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 998097..998291 | 1007..1201 | 100 | <- | Minus |
| arm_3L | 998351..998731 | 626..1006 | 100 | <- | Minus |
| arm_3L | 998824..999013 | 436..625 | 100 | <- | Minus |
| arm_3L | 999079..999195 | 319..435 | 100 | <- | Minus |
| arm_3L | 999260..999375 | 203..318 | 100 | <- | Minus |
| arm_3L | 999447..999542 | 107..202 | 100 | <- | Minus |
| arm_3L | 999617..999682 | 41..106 | 100 | <- | Minus |
| arm_3L | 1000378..1000401 | 17..40 | 100 | | Minus |
BO33301.pep Sequence
Translation from 16 to 1228
> BO33301.pep
MSCFFRLFASPGKMDGNPLSEIEEIVKTTTEQHESNSRVDGGGGVENAST
NGHGRSHDNNDESHTAVSDKAAALKKRQCVFAELMSTEEAYVQDLHEIVN
GYMTEINNTNSDIPMPEDLKGGKMKLVFNNIKDIYEWHRDFFLRALRNCQ
KSPADLGPLIKRSATKFALYYTYCSNKPLSEYIVSAHYQYFDSIRQKLGH
RLDLSNLIIKPVQRITKYELLIKEIIKATEGAGLYKEVPMLQEAYQQMKV
VVKTVNDMMVVLRSLQDFDGEITAQGSLLMQGPMNCVVDAAQKHRELQVF
LFQQIIIFADIEKTKNQYASPIFKYRSHIQLNHMQMKELGDCRFQIRSTD
PKIPEMTIICQAASQENYAGWRDMLNKILQQQNDLIFMLSNPLSTKNKAS
FLDH
BO33301.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| trio-PE | 398 | CG18214-PE | 1..398 | 1..398 | 2070 | 100 | Plus |
| trio-PF | 658 | CG18214-PF | 269..658 | 9..398 | 2025 | 100 | Plus |
| trio-PB | 658 | CG18214-PB | 269..658 | 9..398 | 2025 | 100 | Plus |
| trio-PD | 804 | CG18214-PD | 415..804 | 9..398 | 2025 | 100 | Plus |
| trio-PC | 2263 | CG18214-PC | 1874..2263 | 9..398 | 2025 | 100 | Plus |
