BO33302.complete Sequence
2713 bp assembled on 2012-09-19
GenBank Submission: KX798416
> BO33302.complete
GAAGTTATCAGTCGACATGGAGAAGTTTCCGCTGAAGGGCAGCAGGGAGG
CCGCCGCGGAGGGCAACAGCTACATAACCGCCTACCAAACGGTCATGAAA
AAGTCGAACGGCCACACAAACGGAGCCGGCGGCGACGGCGACCTAGACGG
AACTTTTCGTGACCATCCGCTGGCGCAGCACACCAAACTGACCACCTCGC
TGACGGCGGCGGGCACCGACGACGAGGATATGATTGACATCACACCCCGC
TCCAGTCCAGGCGATGTGATCGGCGGCGGCGGAGGAGGAGGAAGCAGCAG
TGGCTATCACCGGGAAACGGCCACCGAATCGGACACCGAACGAGATTTCG
GACACTCTGGCGGCAACGGCGGCGGCAATCACCACAATCAGCGGACAATG
CACCAGCATGTGCCAACTCACAGTGCCTTCGGCGATCCTATGGACGGAGC
ACTATCCTTCTATGGTTCCTCGGACGTGCAAGATGATATTCCTGGCATTG
GGCAGTACGAAGATTTTCACACCATTGATTGGCAGCGGGACATTGCCCGT
GATCGGATGCGACATCGCTACATAGTCAAGAAGCGACAGGACTCCTTGTG
GGATCTGATAAAGGGTTCCATTGATGCCGGATCTGGCTGGCTATGTGTTT
TACTCGTCGGAATTGCCGCAGGCTGTGTGGCGGGCATGGTGGACATTGGA
GCTAGTTGGATGTCGGATCTAAAGCATGGCATTTGTCCACCCGCCTTTTG
GTTTAACAGGGAACAATGCTGCTATCCGGCCAAACAGTCAGTATTTGAAG
AAGGCAACTGCTCGACGTGGAAAACCTGGCCAGAGATCTTTGGTTTGGAT
CGAAATGGCACCGGACCATATATCGTCGCTTACATCTGGTATGTGCTGTG
GGCTTTGCTTTTTGCTTCGCTCAGCGCCTCCCTTGTGCGAATGTTTGCGC
CCTACGCCTGCGGATCTGGTATTCCCGAGATAAAGACCATCTTGTCTGGC
TTCATTATACGCGGCTATCTAGGAAAGTGGACGCTGCTGATCAAATCGGT
GGGTCTGATGCTGTCTGTATCCGCTGGCCTCACTTTGGGCAAGGAAGGAC
CCATGGTCCACATTGCCAGTTGTATTGGAAACATATTCTCACATGTTTTC
CCAAAATATGGTCGAAATGAGGCCAAGAAGCGTGAGATTCTTTCGGCAGC
AGCAGCGGCAGGCGTCTCGGTGGCCTTCGGAGCACCAATCGGTGGAGTTC
TCTTTTCGCTGGAGGAAGTGTCATACTATTTTCCATTGAAGACATTGTGG
CGTTCATTCTTTTGTGCATTGATTGCCGCATTCGTTTTACGATCACTGAC
GCCGTTTGGCAACGAGCATTCCGTGCTCTTTTTCGTGGAGTATAACAAGC
CCTGGATCTTTTTCGAACTTATTCCTTTTGTTTTCCTCGGAATTATGGGG
GGTGTTATTGGCACATTCTTCATCAAGGCCAATTTGTGGTGGTGCCGCTA
CAGGAAGTTCAGCAAGCTCGGACAGTATCCAGTAATGGAAGTGCTCTTCG
TTACCCTGGTCACTGCCATCATTTGCTACCCCAATCCATTTACCCGAATG
AACATGAACGAGCTAATATTCCTATTGGTTAGCAAGTGCTCACCCGGAGA
TGTCACCAATCCGTTATGTGATTACAAGCGCATGAACATCACGTCGGGCA
ACAGTTTCATTGAAGTTACGGAGCCAGGTCCTGGTGTGTACAGCTCCATT
TGGCTGCTTATGCTCACCTTTATACTTAAACTGGCCCTGACCATCTTCAC
GTTTGGCATGAAAGTGCCCGCTGGTCTGTTTATTCCGTCCCTGCTCCTTG
GCGCCATCATGGGTCGCATTGTTGGAATCGGTGTGGAGCAGTTTGCCTAC
AGCTATCCCAATATTTGGTTCTTTACCGGTGAGTGTGCGGACAGCAATCT
TATCACACCCGGACTGTATGCGGTTGTGGGAGCAGCAGCTGTGCTGGGAG
GTGTCACTCGAATGACCGTCTCCCTGGTAGTGATAATGTTCGAGCTAACA
GGCGGAGTGCGGTATATTGTGCCCCTGATGGCTGCCGCCATGGCCTCCAA
GTGGGTGGGTGATGCTCTGGGCAGGCAAGGTATCTACGATGCGCACATTG
CGCTGAATGGTTATCCGTTCCTAGACAGCAAAGAAGAGTTTGCGCATACA
ACACTGGCCGCAGATGTGATGCAACCAAAGCGGAATGAAACTTTGAATGT
CATTACCCAAGACTCCATGACGGTGGACGATGTTGAGAACCTTCTTAAAG
AAACGGAACACAATGGCTATCCGGTGGTGGTGTCGCGGGAGAATCAATAT
TTAGTGGGCTTTGTATTGCGCAGGGATCTTAACTTGGCCATAGGCAATGC
CAAGCGTCTAATCGAGGGCATTAGCAGCAGCTCCATAGTATTATTCACAT
CATCCCAGCCTATTCAAAATCTGGGACCCCAGCCGCTGAAGCTGAAAAAG
ATCCTGGATATGGCACCGATCACAGTTACAGATCAAACGCCAATGGAGAC
GGTAGTGGACATGTTCCGAAAGCTGGGACTGCGCCAAACATTGGTAACAC
ACAACGGTCGCCTACTGGGCGTAATTACAAAGAAAGATGTGCTGCGCCAT
GTGAAGCAGATGGATAACGAAGATCCCAATACGGTGCTCTTCAACGCAAG
CTTTCTAGACCAT
BO33302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:04:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ClC-c-RD | 2682 | CG5284-PD | 1..2679 | 17..2695 | 13395 | 100 | Plus |
| ClC-c-RC | 2682 | CG5284-PC | 1..2679 | 17..2695 | 13395 | 100 | Plus |
| ClC-c-RB | 2469 | CG5284-PB | 1..2466 | 230..2695 | 12330 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:04:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ClC-c-RD | 3962 | CG5284-RD | 379..3057 | 17..2695 | 13395 | 100 | Plus |
| ClC-c-RC | 3718 | CG5284-RC | 379..3057 | 17..2695 | 13395 | 100 | Plus |
| ClC-c-RB | 3319 | CG5284-RB | 63..2658 | 100..2695 | 12965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:04:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16093015..16093649 | 817..1451 | 3175 | 100 | Plus |
| 3L | 28110227 | 3L | 16093987..16094549 | 1668..2230 | 2815 | 100 | Plus |
| 3L | 28110227 | 3L | 16091514..16091859 | 102..447 | 1730 | 100 | Plus |
| 3L | 28110227 | 3L | 16093704..16093922 | 1450..1668 | 1095 | 100 | Plus |
| 3L | 28110227 | 3L | 16094825..16095042 | 2390..2607 | 1090 | 100 | Plus |
| 3L | 28110227 | 3L | 16092751..16092959 | 609..817 | 1045 | 100 | Plus |
| 3L | 28110227 | 3L | 16092531..16092699 | 446..614 | 845 | 100 | Plus |
| 3L | 28110227 | 3L | 16094607..16094771 | 2230..2394 | 825 | 100 | Plus |
| 3L | 28110227 | 3L | 16095105..16095193 | 2607..2695 | 445 | 100 | Plus |
| 3L | 28110227 | 3L | 16090832..16090918 | 17..103 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:04:45 has no hits.
BO33302.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 11:12:00 Download gff for
BO33302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-c-RC | 379..3057 | 17..2697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:39 Download gff for
BO33302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-c-RC | 379..3057 | 17..2697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:40 Download gff for
BO33302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ClC-c-RC | 379..3057 | 17..2697 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:40 Download gff for
BO33302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16090832..16090918 | 17..103 | 100 | -> | Plus |
| 3L | 16094829..16095042 | 2394..2607 | 100 | -> | Plus |
| 3L | 16095106..16095193 | 2608..2697 | 97 | | Plus |
| 3L | 16091516..16091858 | 104..446 | 100 | -> | Plus |
| 3L | 16092532..16092698 | 447..613 | 100 | -> | Plus |
| 3L | 16092756..16092959 | 614..817 | 100 | -> | Plus |
| 3L | 16093016..16093648 | 818..1450 | 100 | -> | Plus |
| 3L | 16093705..16093922 | 1451..1668 | 100 | -> | Plus |
| 3L | 16093988..16094548 | 1669..2229 | 100 | -> | Plus |
| 3L | 16094607..16094770 | 2230..2393 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:39 Download gff for
BO33302.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16087929..16088142 | 2394..2607 | 100 | -> | Plus |
| arm_3L | 16088206..16088293 | 2608..2697 | 97 | | Plus |
| arm_3L | 16083932..16084018 | 17..103 | 100 | -> | Plus |
| arm_3L | 16084616..16084958 | 104..446 | 100 | -> | Plus |
| arm_3L | 16085632..16085798 | 447..613 | 100 | -> | Plus |
| arm_3L | 16085856..16086059 | 614..817 | 100 | -> | Plus |
| arm_3L | 16086116..16086748 | 818..1450 | 100 | -> | Plus |
| arm_3L | 16086805..16087022 | 1451..1668 | 100 | -> | Plus |
| arm_3L | 16087088..16087648 | 1669..2229 | 100 | -> | Plus |
| arm_3L | 16087707..16087870 | 2230..2393 | 100 | -> | Plus |
BO33302.pep Sequence
Translation from 16 to 2713
> BO33302.pep
MEKFPLKGSREAAAEGNSYITAYQTVMKKSNGHTNGAGGDGDLDGTFRDH
PLAQHTKLTTSLTAAGTDDEDMIDITPRSSPGDVIGGGGGGGSSSGYHRE
TATESDTERDFGHSGGNGGGNHHNQRTMHQHVPTHSAFGDPMDGALSFYG
SSDVQDDIPGIGQYEDFHTIDWQRDIARDRMRHRYIVKKRQDSLWDLIKG
SIDAGSGWLCVLLVGIAAGCVAGMVDIGASWMSDLKHGICPPAFWFNREQ
CCYPAKQSVFEEGNCSTWKTWPEIFGLDRNGTGPYIVAYIWYVLWALLFA
SLSASLVRMFAPYACGSGIPEIKTILSGFIIRGYLGKWTLLIKSVGLMLS
VSAGLTLGKEGPMVHIASCIGNIFSHVFPKYGRNEAKKREILSAAAAAGV
SVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFCALIAAFVLRSLTPFGNE
HSVLFFVEYNKPWIFFELIPFVFLGIMGGVIGTFFIKANLWWCRYRKFSK
LGQYPVMEVLFVTLVTAIICYPNPFTRMNMNELIFLLVSKCSPGDVTNPL
CDYKRMNITSGNSFIEVTEPGPGVYSSIWLLMLTFILKLALTIFTFGMKV
PAGLFIPSLLLGAIMGRIVGIGVEQFAYSYPNIWFFTGECADSNLITPGL
YAVVGAAAVLGGVTRMTVSLVVIMFELTGGVRYIVPLMAAAMASKWVGDA
LGRQGIYDAHIALNGYPFLDSKEEFAHTTLAADVMQPKRNETLNVITQDS
MTVDDVENLLKETEHNGYPVVVSRENQYLVGFVLRRDLNLAIGNAKRLIE
GISSSSIVLFTSSQPIQNLGPQPLKLKKILDMAPITVTDQTPMETVVDMF
RKLGLRQTLVTHNGRLLGVITKKDVLRHVKQMDNEDPNTVLFNASFLDH
BO33302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:39:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ClC-c-PD | 893 | CG5284-PD | 1..893 | 1..893 | 4713 | 100 | Plus |
| ClC-c-PC | 893 | CG5284-PC | 1..893 | 1..893 | 4713 | 100 | Plus |
| ClC-c-PB | 822 | CG5284-PB | 1..822 | 72..893 | 4339 | 100 | Plus |
| ClC-b-PA | 813 | CG8594-PA | 128..811 | 174..876 | 601 | 27.8 | Plus |
| ClC-a-PG | 1018 | CG31116-PG | 28..678 | 113..798 | 534 | 28.1 | Plus |
