BO33309.complete Sequence
3274 bp assembled on 2012-09-21
GenBank Submission: KX796400
> BO33309.complete
GAAGTTATCAGTCGACATGAGCGGATCCAATGCAAAGTCCTCGGGGACTG
GCTTCGGCAGCCACATTCCCAGCATCGAGGAAAAGAACAAGCAGATCCAG
CAGGAAACCATGATGGAGAAGCTGCGGGCCAAGTACCGGAACAAGCCAAA
GAGCTACGAGGAGATCAAGAAGTCGGTGCGTATGTACTTTATCGAGAAGC
ACTACCCTCTGGACCCCCTGTGCAAGGCCACGCTGCAGTCGGCGCTGGAC
AAGTTGCAGCACTACATCAAGGTCACGTCACGCCACGGCCTTGTGGAGCG
TTTGGAGAGCCTCTCGCGCCAGTTGGGCCTCAAGTTCATGGAGGACCAGC
AGCTTCTCTTCATATCAACGGACATGTTCTACGTAGAGATCCTGCTGGAC
GCCGCCGGCAGTCTGTCGGACGTCAAGGTGCACCACGAGTGCAAGATCGA
GCAACAGTCCAGCGAGCTAGTGGCCTGCCTCAAGTCTGGCGACTTTGCAG
ACTTTACGGTTCAACTCGAGGGTCTGTCCTCCATTTACCAGCTGAATGCC
GAGCCCAAGGTGAAAAAGAAGGCGTTTGTAGCGCTTCAGGCCATGGAGAC
GGATATCCAGAGCCTATACCAACTGCACCTGCAAGGTCACTCCGGAGACA
GCTACTCACTTATGACAAGTTCATCGGTGGGTCTTGTGCTGCCCCGTCGC
GGTGGCCATCCTATGAGGCTTACTTATTTCTGCCCGCCGCTCCACCTTCC
CGAAGGGGATCCCAAACTGGCCAGCGGCGATTTCACCATCGACCAGGTAA
TGCGAAGCAGCTACGGACTGAGTGCCACTATCAATCTCGAAGGCTCATCA
GCCAACAAACTGCAGACTTTGCCAACGGTGACTTTGGTCCGCGATGCCCA
AACGGGGTTGGAGGTTCCCACCTATGCCCAACTTAACCAGAACAACTCGC
TGCTGATGCCGGCCACGTTTGTGCTTCGGCTGAACAAACCCATGCCTGTT
TGCCTGGAATCACTAAAGGCTCTCGGTCTGCCCGGTCTAGACTCAGTTGC
CACTCCTCCTGGTCCGCCCACCACAGTGCTTAATCTCATAGTACAAACTG
CATCGAAGCAGGCCATTAAGAACACACAGCGCGGCCTGTATGTGAATTTA
CCTAAAGAGACGCACTGCTATTTCTTTACCGACAACCGCAAACTGCAGGG
AACTCTGGTGTCATCACTGCCCTTCACTGAACCCGCCCAGGTTCCGCGAA
TCGTGGCGTTCCTCAAGAAACAAGCTCTCTTCTACACCCTGCTCGCAAGC
TGTGTTCGTGAGCAGCAGAAGCAGTATAATGATATGGACAGCACTGTGAT
ACTGGAGGTAACCGCCGTTTCATTTAATCAAATTACGGTTGAGCTGCAGC
ACCCGTACGAAGAGTCGCTGGCCACTGTGGATTTTCTGCTTGAGGATGGT
CAGCCCACGTGCAGCGTTTACTGTCTGACCAACGAATACGAGCTGCTGTC
CCAGAAGTTAACCCGCACCGCGCGCAAAGTGGTATCCATTCCGATGGTAA
TCTACAAGTTGCTTAAGTGCTGGGATGAGGAGCACGAATTCAAACTGCAT
GGCGCGATTGGACCTGGATCTGGTTCTGGAGCAATCGGAGGTGGAGGCAT
GAGTGGTGGTGGACCTGTCTCAGGAGTAGGCAATAACTTTAGCCAGTTTT
CAATGGATACGCCGACGCCTTCCGATGGAAGCCTACCCGGAGGTGGCTTC
GCCAACATTAACAACCTTAAAATGGATGCGAAGTCGCGATCTCTAGCGGA
TGCTTTTGCCGCTTCTACTTCGGCAGCAGCGGCCATAGCGGGTTTGATCA
ATCTTAAGCGGGAAACCGATCCACAGTCTGGTAGTTCGGCCAGTGGCACC
ACGGTCAGCGGCAGCTCCAGCTCATCCGGCTCCGCCAAGACGAGTGACCA
TGACATTGCTGACAAGTACAAAAATATCTGGAAGGACAAGACTCCAAATT
TGAAGCATTGCGTCAGCATCACCCCCATCCCAGGAGATGGAAAGTCTGGA
TCAGCTGGGGGAGTGTCCGGGGTCGAGGTACAGCGAACGGGTGGTATCGA
AATTATTCCATTGAATGCCCAGGCGGCTATAGCCGGAGGAGGTGTTACAG
CCTCATCCAGTGCCACTCCCACGACTATAACTATTACCCCAATAACTGGC
AAGGATCCCAGTAAGGACTCAACCAAAAAAAGTACCGCTGCTTCAGCTGG
AGTAGGTGTGGCCGCAAAGCGTCCCCACGAAAGTAGCACAAGTAGTTCGT
CTACGTCCGGTTGTAGTGGTTCTGGCAGCTCCATGTCGTCTTCAGCCAGC
AGCGGCTCTTCAGATACGCAGAAGGAAAAGAAGCGCAAGAAAAAGCGCGA
CGATTCGCCCATGGGACCGCCGGAGAAGATCTATTCTAGGCAAAACTCGC
CTGCAGGTGGCGCAGATGCTTCCGCAACTGGTGGAGTGGTTCGCAAGTTT
TCCTCTCCCTCGTCGTCACCCAAAGCTGGTGGCGGTGGACAGGGTCTAAT
GGCCGGAGTGCCGACTGCCCGTCCCAGCCCCAAGCACTCTCCCGTGTATA
GCAGTCCCAAGCACAACACCGCCTCCAACAGCCCGAAGTCGCCGTTTGGC
ACACACTCACCCAAACACGGCTCTTCCGGAAAGCCGAGCATGTCAACGCT
TAAAAGTGCAGCTACAGCTGCCACCATCTTAAGTCCCAAGGGCGATAAGT
CCTCGTCAGCTGTGGGTAACACATCTTCGGGACCATCCGCCTCCTCAGGA
TCCAGCGGAGCTACTGGCCTGGTGAGGTCATTTGCCAGCGTTGGAGCTCC
GCCTCCACCACCTCCAATTCCTCCATTAGCGAGCTCGAGCGGATCTATCA
GCAGCAGCCAGAGTTTAAAGAAGGAGAAAACCTCTTCGGCATCCGGTTCC
AGTTCCACATCATCCTCGGCAACTGCAGGTGTCGCATCTGGCGGAGGTAT
TTCACCGGCAAGTGTGGCTGCTGCAGTAGCTGCCCTGAAATCCTCACAAC
AGCAGATGAAGTCAGTCGCCAGTCTTTCGCATCTGGCGGCGGGCGGGGGA
CTGGGTAGCTATGCGGCCCCGTCGGGAGCGGGAGCATCTGGTGCAGCCGC
AGTGGTGGTGGGAGCAGGAGCTGGCGCTGGAGCGGGGGCCTCCGGACTGG
AGCTGAGTGCCCTGCGCAAGGGCATGGCGGGAGGTGCGGTAAGTCCGTTT
TCATTAGCAAGCTTTCTAGACCAT
BO33309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:06:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED1-RB | 3243 | CG7162-PB | 1..3240 | 17..3256 | 16185 | 100 | Plus |
| MED1-RA | 4428 | CG7162-PA | 1..3228 | 17..3244 | 16110 | 99.9 | Plus |
| MED1-RC | 3426 | CG7162-PC | 1..3222 | 17..3238 | 16095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:06:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED1-RB | 4185 | CG7162-RB | 152..3391 | 17..3256 | 16185 | 100 | Plus |
| MED1-RA | 4962 | CG7162-RA | 152..3379 | 17..3244 | 16110 | 99.9 | Plus |
| MED1-RC | 4957 | CG7162-RC | 152..3373 | 17..3238 | 16095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:06:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21630915..21632840 | 3256..1331 | 9615 | 99.9 | Minus |
| 3L | 28110227 | 3L | 21632916..21634197 | 1331..50 | 6410 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:06:21 has no hits.
BO33309.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-21 17:40:20 Download gff for
BO33309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED1-RB | 150..3389 | 17..3258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:02 Download gff for
BO33309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED1-RB | 152..3391 | 17..3258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:12 Download gff for
BO33309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MED1-RB | 152..3391 | 17..3258 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:12 Download gff for
BO33309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21630913..21632839 | 1332..3258 | 99 | <- | Minus |
| 3L | 21632916..21634196 | 51..1331 | 100 | <- | Minus |
| 3L | 21634262..21634295 | 17..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:02 Download gff for
BO33309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21624013..21625939 | 1332..3258 | 99 | <- | Minus |
| arm_3L | 21626016..21627296 | 51..1331 | 100 | <- | Minus |
| arm_3L | 21627362..21627395 | 17..50 | 100 | | Minus |
BO33309.pep Sequence
Translation from 16 to 3274
> BO33309.pep
MSGSNAKSSGTGFGSHIPSIEEKNKQIQQETMMEKLRAKYRNKPKSYEEI
KKSVRMYFIEKHYPLDPLCKATLQSALDKLQHYIKVTSRHGLVERLESLS
RQLGLKFMEDQQLLFISTDMFYVEILLDAAGSLSDVKVHHECKIEQQSSE
LVACLKSGDFADFTVQLEGLSSIYQLNAEPKVKKKAFVALQAMETDIQSL
YQLHLQGHSGDSYSLMTSSSVGLVLPRRGGHPMRLTYFCPPLHLPEGDPK
LASGDFTIDQVMRSSYGLSATINLEGSSANKLQTLPTVTLVRDAQTGLEV
PTYAQLNQNNSLLMPATFVLRLNKPMPVCLESLKALGLPGLDSVATPPGP
PTTVLNLIVQTASKQAIKNTQRGLYVNLPKETHCYFFTDNRKLQGTLVSS
LPFTEPAQVPRIVAFLKKQALFYTLLASCVREQQKQYNDMDSTVILEVTA
VSFNQITVELQHPYEESLATVDFLLEDGQPTCSVYCLTNEYELLSQKLTR
TARKVVSIPMVIYKLLKCWDEEHEFKLHGAIGPGSGSGAIGGGGMSGGGP
VSGVGNNFSQFSMDTPTPSDGSLPGGGFANINNLKMDAKSRSLADAFAAS
TSAAAAIAGLINLKRETDPQSGSSASGTTVSGSSSSSGSAKTSDHDIADK
YKNIWKDKTPNLKHCVSITPIPGDGKSGSAGGVSGVEVQRTGGIEIIPLN
AQAAIAGGGVTASSSATPTTITITPITGKDPSKDSTKKSTAASAGVGVAA
KRPHESSTSSSSTSGCSGSGSSMSSSASSGSSDTQKEKKRKKKRDDSPMG
PPEKIYSRQNSPAGGADASATGGVVRKFSSPSSSPKAGGGGQGLMAGVPT
ARPSPKHSPVYSSPKHNTASNSPKSPFGTHSPKHGSSGKPSMSTLKSAAT
AATILSPKGDKSSSAVGNTSSGPSASSGSSGATGLVRSFASVGAPPPPPP
IPPLASSSGSISSSQSLKKEKTSSASGSSSTSSSATAGVASGGGISPASV
AAAVAALKSSQQQMKSVASLSHLAAGGGLGSYAAPSGAGASGAAAVVVGA
GAGAGAGASGLELSALRKGMAGGAVSPFSLASFLDH
BO33309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MED1-PB | 1080 | CG7162-PB | 1..1080 | 1..1080 | 5455 | 100 | Plus |
| MED1-PA | 1475 | CG7162-PA | 1..1076 | 1..1076 | 5434 | 100 | Plus |
| MED1-PC | 1141 | CG7162-PC | 1..1074 | 1..1074 | 5426 | 100 | Plus |
| sbb-PE | 929 | CG5580-PE | 32..415 | 706..1060 | 258 | 27.9 | Plus |
| sbb-PC | 929 | CG5580-PC | 32..415 | 706..1060 | 258 | 27.9 | Plus |
| sbb-PE | 929 | CG5580-PE | 323..863 | 528..1063 | 232 | 24 | Plus |
| sbb-PE | 929 | CG5580-PE | 9..449 | 598..1045 | 202 | 24 | Plus |
| sbb-PE | 929 | CG5580-PE | 228..794 | 530..1073 | 199 | 23.8 | Plus |
| MED1-PA | 1475 | CG7162-PA | 671..1248 | 540..1082 | 198 | 23.4 | Plus |
| sbb-PE | 929 | CG5580-PE | 58..594 | 584..1060 | 197 | 22.2 | Plus |
| MED1-PA | 1475 | CG7162-PA | 813..1346 | 546..1071 | 178 | 24.3 | Plus |
| MED1-PC | 1141 | CG7162-PC | 671..1136 | 540..1005 | 172 | 25 | Plus |
