Clone BO33313 Report

Search the DGRC for BO33313

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:333
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG6972-RA
Protein status:BO33313.pep: Imported from assembly
Sequenced Size:919

Clone Sequence Records

BO33313.complete Sequence

919 bp assembled on 2012-10-16

GenBank Submission: KX799143

> BO33313.complete
GAAGTTATCAGTCGACATGTCAGAGCCCGCAGCCCAACAACAGCAGTCCC
AGAACGGCAAGGAGCGCTCCAAGTCCACGGAGGAGAAGGAAGTACCACGC
GAACCGGCGCTGGTCCTCAAAGACATCGATATAAAGACTGAGCTAGAGAG
CCTAGTGAAACTGCTCGATGGCAAGATCTACAAGGAGGAGGAAGTGGCCA
TGGAGGAGCTGCATCAGTATCTGATCGAGGACGATGGCTCCTGGGCGCTG
GGCGACAACTTTCTGATCTTCGTGCAGCGCGTCCTGCGTGACAATCAGGC
CTTCTCGCCGGACACACGGATACACCTGATCCGCACGCTGGCCTATGCGG
CGCTCAAAGATGATGTGATCATCATTCTGCACCAGGATCGAAGGGATCAC
ACACTGATGAACTACGCCCAGGACATTGACAAGCAGACGCCCGAGGAGCA
GCAGGCCTGGGCCATGTTTATGTGCAATCTCTTTGAGAACCTGGGTCCCT
CCGAATGGCTGTTGTACATTTCGGAGTGGGAATACAATGGTCAGACCATC
TCCAACATACGAGTGACCACCAAGGTGGCCGTCCACTGCATCCTCTCCAA
TTGCCCGCAGCTGAAAAATATTGGCAGCATGATCCTGTACAACATTGCTA
TTAAGGAAGTGAAGACTGTGGTATTCGACGATATCGCCGTGGAGCTGGCC
ATGGCCATTCTTCAGTTCTTCCAGAGCAGTCCCAACGAAGACCAAATCTT
CCGCACCCTGAGGGCCCTCGTTCGATTCCTCGAGGTCTCGCAAGACGTAC
CGATGATCATTCAAATGATTGGACCGCATCCAAAACAATTCGCCGGCAAG
AGCGAGCGCGTGGATGAGCTGATAAAGATCATTAGTCGCAAGGTGCCCGC
CGCAAGCTTTCTAGACCAT

BO33313.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:53:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG6972-RA 888 CG6972-PA 1..885 17..901 4425 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:53:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG6972-RA 1305 CG6972-RA 292..1176 17..901 4425 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:53:16
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22703254..22703592 131..469 1695 100 Plus
3R 32079331 3R 22703652..22703856 470..674 1025 100 Plus
3R 32079331 3R 22704091..22704209 783..901 595 100 Plus
3R 32079331 3R 22703908..22704024 670..786 585 100 Plus
3R 32079331 3R 22702926..22703043 17..134 575 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 12:53:17 has no hits.

BO33313.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-16 14:02:19 Download gff for BO33313.complete
Subject Subject Range Query Range Percent Splice Strand
CG6972-RA 292..1176 17..903 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:01 Download gff for BO33313.complete
Subject Subject Range Query Range Percent Splice Strand
CG6972-RA 292..1176 17..903 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:16:07 Download gff for BO33313.complete
Subject Subject Range Query Range Percent Splice Strand
CG6972-RA 292..1176 17..903 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:16:07 Download gff for BO33313.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22702926..22703039 17..130 100 -> Plus
3R 22703254..22703592 131..469 100 -> Plus
3R 22703652..22703852 470..670 100 -> Plus
3R 22703909..22704022 671..784 100 -> Plus
3R 22704093..22704209 785..903 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:01 Download gff for BO33313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18528648..18528761 17..130 100 -> Plus
arm_3R 18528976..18529314 131..469 100 -> Plus
arm_3R 18529374..18529574 470..670 100 -> Plus
arm_3R 18529631..18529744 671..784 100 -> Plus
arm_3R 18529815..18529931 785..903 98   Plus

BO33313.pep Sequence

Translation from 16 to 919

> BO33313.pep
MSEPAAQQQQSQNGKERSKSTEEKEVPREPALVLKDIDIKTELESLVKLL
DGKIYKEEEVAMEELHQYLIEDDGSWALGDNFLIFVQRVLRDNQAFSPDT
RIHLIRTLAYAALKDDVIIILHQDRRDHTLMNYAQDIDKQTPEEQQAWAM
FMCNLFENLGPSEWLLYISEWEYNGQTISNIRVTTKVAVHCILSNCPQLK
NIGSMILYNIAIKEVKTVVFDDIAVELAMAILQFFQSSPNEDQIFRTLRA
LVRFLEVSQDVPMIIQMIGPHPKQFAGKSERVDELIKIISRKVPAASFLD
H

BO33313.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:58:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG6972-PA 295 CG6972-PA 1..295 1..295 1505 100 Plus