BO33315.complete Sequence
3661 bp assembled on 2012-11-16
GenBank Submission: KX796622
> BO33315.complete
GAAGTTATCAGTCGACATGATGCGATTGGCGCGATTTACGCAGGGTTTCT
CGTTTAACAAGAATGTGGCCAAGCATCGCGGCAGTGGCAGTAGCAACGGC
ACCGGAAACGGAAGCGGGACCGGAAACGGCCAGGGATTAGGTGGCAGCTG
CAGTGCCAACGGCCTGGCAGCCACTGGCGGCGTTGGAGGGGGCGGTGGGA
GTGGCAGCGGCGGCGGTGGGTGTGGCAGCGGGAGTGGCAGTGGGAGTGGC
AAGCGGAAATCAAAGGCAAGAACAAAGTGCTTCGGTGGCACAGTGTTTCG
GTGTTGCCTCCCTTGTCGCGGGGGCGGCTCCGCAGCCCCCGCCACAAGTC
CGCCCCAAACACCAGCCCAGACGCCGGACGAGCTCAAGGTCATTCCGGAG
GATTGTAATCTGGAAAAGTCCGCGGAGCAAAAGCGCGACTTACTGGAGCG
GAACAACAAGGAGGACGATCTGCTGAACCGCACCGTATCCGGATCTGAGC
TGGATCTATACGGCGGCGCCGGCGGCGGTACGAAAAAGCATTCGCTGGCA
GACACCATCGATACATCGGTGACCACCCCGATTTCCCTAAAGACCCTGAT
CAACGACGTCGACGAGGAGCTGGACCAGCAACTGAGTGCGGCGGATATAG
CGGCCGCCAGTTTGGCCAGCGGTCTGGTTGCCCGCCGAGCGGAACCAGAA
ACACTGAGCGACGCCAGTGTCTCACCCACCGCGGTGGTGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCTGCAGCAACCACTCTTGCAATCACAACCACATT
TTGTGCCCAGCAGCGGCAATATCCTTAGCCAGGTCACCCTGTACAGCGGC
AGCAATCCCTCGACAAATCCCTGCCAGAGTGCAGTGCAGAATCAAGGCCA
AAACTCCAATCCCAATCCCAATCAGAATCCAAACACAAATCCGAACCAGA
ATCAACAGCGTTGCAGTTGCCAGCCGCAGACTTCCCCATTGCCGCATATC
AAAGAGGAGGAGGAATCCGATCAGGCCAACTTTAAACACCAGACGAGCCT
GAAGGAGCATCAGCCTCTCCCGCCACCGATCACCATAGCCACTGGCTACT
GCGGCAGCTGCGAGAGCGTTCATCACTCATCCGCAACCTCGTCTTCGGCG
GGCACAGTACCTCCGGGGGGTCAGCAAACTCAGGAGTATATTGCCGGTAC
CTCTTCGACGCCCTCGCCGCGCATCAAACTAAAGTTCCGCAAGCCGCACA
AGTCCTGCTGGTCGCGAATCGTCCTTGCGCCCATTGGATCGGCGGGTGGC
TCCTCATCGGCCACCACTGTCATTGGCAGCAATTCGAACGAGACTTTGGC
CTCCAGCAGCACCACCGGCGGCACCGCCACCACCACCCAGAACAGCAGCA
GCGTTAGCGTTGCCGCACACCACCGGCTAACCTCGTCGTCGGCCTCCGCC
CTCGCCACCTCGCACCCCAGCAACTCGCAGCTGCTGCCCACCAGCAAGAT
GCAGGCGGAGCAGGGATCCATCGGTGACCTGCAGAAGTACCATAGTCGGT
ATCTCAAGAATCGTCGCCATACTCTGGCCAATGTTCGTTTCGATGTAGAA
AATGGCCAGGGCGCTAGATCACCGCTCGAGGGCGGCTCACCCAGCGCCGG
TTTGGTACTACAGAATTTGCCGCAGCGTCGCGAATCGTTTCTATATCGCT
CCGATTCGGACTTTGAGATGTCACCCAAGTCCATGTCCCGAAACTCAAGC
ATCGCTAGCGAAAGGTTTAAAGAACAGGAAGCCTCTATACTCGTTGACCG
ATCCCATGGCGAGGATCTCATTGTGACGCCTTTCGCCCAAATTTTAGCCA
GCTTACGTTCAGTGCGCAACAATTTATTAAGTCTGACAAATGTTCCAGCA
TCAAACAAATCCAGGCGGCCCAACCAATCGTCGTCGGCCTCGCGATCAGG
AAATCCACCAGGAGCCCCGCTATCCCAAGGCGAGGAGGCATACACCCGCC
TGGCCACCGACACAATCGAGGAGCTGGACTGGTGCCTCGACCAGCTGGAG
ACCATCCAGACCCATCGCAGCGTCTCCGACATGGCGTCGCTTAAGTTCAA
ACGCATGCTCAACAAGGAGCTGTCGCACTTTAGCGAGTCCAGCAGATCGG
GAAATCAGATTTCCGAATATATATGTTCCACATTTTTGGACAAGCAACAG
GAGTTCGACTTGCCATCGCTGCGCGTGGAGGATAATCCCGAGCTGGTCGC
CGCCAATGCAGCCGCTGGTCAACAGTCCGCTGGACAGTATGCACGCTCCC
GATCGCCGCGCGGTCCGCCCATGTCGCAGATCAGCGGCGTGAAGAGACCG
CTGTCGCATACGAATAGCTTTACCGGCGAACGTTTGCCCACCTTCGGTGT
GGAGACACCCAGGGAGAATGAGCTGGGCACGCTGCTCGGCGAACTGGACA
CCTGGGGTATTCAGATATTCAGCATCGGCGAGTTCAGTGTCAATCGACCG
CTCACCTGTGTGGCATACACCATATTTCAGAGTAGAGAATTACTGACCAG
TCTTATGATACCACCGAAAACTTTTCTTAACTTTATGTCTACTCTGGAGG
ACCACTACGTCAAAGACAATCCGTTTCACAATTCGCTGCATGCCGCCGAT
GTGACACAAAGCACTAATGTGCTACTCAATACACCGGCGCTGGAGGGCGT
ATTCACGCCGCTCGAAGTGGGCGGGGCGCTGTTCGCCGCTTGCATACACG
ATGTTGATCATCCCGGCTTAACCAATCAGTTCTTGGTTAACTCAAGTTCC
GAACTAGCATTAATGTACAATGACGAATCTGTTTTGGAAAATCATCATTT
AGCTGTTGCCTTTAAATTATTACAAAATCAAGGATGTGATATATTCTGTA
ATATGCAAAAGAAACAACGCCAAACATTGAGGAAAATGGTTATTGATATT
GTGCTGTCCACGGACATGTCCAAGCACATGAGTCTGCTGGCCGACCTAAA
GACAATGGTGGAAACCAAAAAGGTGGCCGGTTCCGGAGTACTGCTGCTGG
ACAACTACACCGATCGCATACAGGTGCTTGAGAATCTGGTGCACTGCGCC
GATCTGAGCAATCCCACCAAGCCGCTGCCGCTTTACAAGCGCTGGGTAGC
CCTGCTCATGGAGGAGTTCTTCCTGCAGGGCGATAAGGAACGCGAATCGG
GCATGGACATTAGTCCCATGTGCGATCGCCATAATGCCACCATTGAGAAG
TCGCAGGTGGGCTTCATCGACTACATCGTCCACCCGCTATGGGAGACCTG
GGCGGACCTGGTGCATCCGGATGCCCAGGATATACTCGACACGCTTGAAG
AGAACAGAGACTACTACCAGAGCATGATACCGCCTTCGCCGCCGCCATCG
GGCGTCGATGAGAATCCGCAGGAGGACAGGATACGCTTTCAAGTAACCCT
TGAGGAATCCGATCAGGAGAACCTCGCCGAACTGGAGGAGGGCGACGAGA
GTGGTGGCGAGAGCACCACCACAGGCACAACCGGAACCACCGCTGCATCC
GCGCTAAGCGGAGCTGGTGGCGGTGGCGGTGGAGGCGGGGGAATGGCACC
CAGAACGGGTGGCTGCCAAAACCAACCGCAACACGGTGGAATGGCAAGCT
TTCTAGACCAT
BO33315.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:04:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnc-RS | 3630 | CG32498-PS | 1..3627 | 17..3643 | 18120 | 100 | Plus |
| dnc-RB | 3630 | CG32498-PB | 1..3627 | 17..3643 | 18120 | 100 | Plus |
| dnc-RU | 2148 | CG32498-PU | 1..2145 | 1499..3643 | 10710 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnc-RS | 9576 | CG32498-RS | 1353..4979 | 17..3643 | 18120 | 100 | Plus |
| dnc-RB | 4093 | CG32498-RB | 310..3936 | 17..3643 | 18120 | 100 | Plus |
| dnc-RU | 9456 | CG32498-RU | 1287..4859 | 71..3643 | 17850 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3245071..3246198 | 72..1199 | 5640 | 100 | Plus |
| X | 23542271 | X | 3246294..3246685 | 1196..1587 | 1960 | 100 | Plus |
| X | 23542271 | X | 3338446..3338818 | 3072..3444 | 1865 | 100 | Plus |
| X | 23542271 | X | 3337241..3337582 | 2189..2530 | 1710 | 100 | Plus |
| X | 23542271 | X | 3337686..3337955 | 2528..2797 | 1350 | 100 | Plus |
| X | 23542271 | X | 3338970..3339170 | 3443..3643 | 1005 | 100 | Plus |
| X | 23542271 | X | 3334145..3334331 | 1909..2095 | 935 | 100 | Plus |
| X | 23542271 | X | 3321040..3321219 | 1587..1766 | 900 | 100 | Plus |
| X | 23542271 | X | 3338215..3338380 | 2911..3076 | 815 | 99.4 | Plus |
| X | 23542271 | X | 3338026..3338141 | 2796..2911 | 580 | 100 | Plus |
| X | 23542271 | X | 3332442..3332546 | 1804..1908 | 525 | 100 | Plus |
| X | 23542271 | X | 3334553..3334648 | 2094..2189 | 480 | 100 | Plus |
| X | 23542271 | X | 3244798..3244854 | 17..73 | 285 | 100 | Plus |
| X | 23542271 | X | 3325925..3325965 | 1763..1803 | 205 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 13:04:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6758..6953 | 1354..1550 | 143 | 57.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2361 | 1354..1408 | 122 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6791 | 1354..1408 | 122 | 69.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2781..2859 | 1351..1434 | 120 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2370..2418 | 1354..1402 | 119 | 71.4 | Plus |
BO33315.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-07 15:39:46 Download gff for
BO33315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RB | 308..3934 | 17..3645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:34 Download gff for
BO33315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RB | 310..3936 | 17..3645 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:42 Download gff for
BO33315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dnc-RB | 310..3936 | 17..3645 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:42 Download gff for
BO33315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3244798..3244854 | 17..73 | 100 | -> | Plus |
| X | 3245073..3246195 | 74..1196 | 100 | -> | Plus |
| X | 3246295..3246685 | 1197..1587 | 100 | -> | Plus |
| X | 3321041..3321217 | 1588..1764 | 100 | -> | Plus |
| X | 3325927..3325965 | 1765..1803 | 100 | -> | Plus |
| X | 3332442..3332546 | 1804..1908 | 100 | -> | Plus |
| X | 3334145..3334331 | 1909..2095 | 100 | -> | Plus |
| X | 3334555..3334648 | 2096..2189 | 100 | -> | Plus |
| X | 3337242..3337582 | 2190..2530 | 100 | -> | Plus |
| X | 3337689..3337953 | 2531..2795 | 100 | -> | Plus |
| X | 3338026..3338140 | 2796..2910 | 100 | -> | Plus |
| X | 3338215..3338377 | 2911..3073 | 99 | -> | Plus |
| X | 3338448..3338816 | 3074..3442 | 100 | -> | Plus |
| X | 3338970..3339170 | 3443..3645 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:34 Download gff for
BO33315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3140328..3140718 | 1197..1587 | 100 | -> | Plus |
| arm_X | 3138831..3138887 | 17..73 | 100 | -> | Plus |
| arm_X | 3139106..3140228 | 74..1196 | 100 | -> | Plus |
| arm_X | 3215074..3215250 | 1588..1764 | 100 | -> | Plus |
| arm_X | 3219960..3219998 | 1765..1803 | 100 | -> | Plus |
| arm_X | 3226475..3226579 | 1804..1908 | 100 | -> | Plus |
| arm_X | 3228178..3228364 | 1909..2095 | 100 | -> | Plus |
| arm_X | 3228588..3228681 | 2096..2189 | 100 | -> | Plus |
| arm_X | 3231275..3231615 | 2190..2530 | 100 | -> | Plus |
| arm_X | 3231722..3231986 | 2531..2795 | 100 | -> | Plus |
| arm_X | 3232059..3232173 | 2796..2910 | 100 | -> | Plus |
| arm_X | 3232248..3232410 | 2911..3073 | 99 | -> | Plus |
| arm_X | 3232481..3232849 | 3074..3442 | 100 | -> | Plus |
| arm_X | 3233003..3233203 | 3443..3645 | 99 | | Plus |
BO33315.pep Sequence
Translation from 16 to 3661
> BO33315.pep
MMRLARFTQGFSFNKNVAKHRGSGSSNGTGNGSGTGNGQGLGGSCSANGL
AATGGVGGGGGSGSGGGGCGSGSGSGSGKRKSKARTKCFGGTVFRCCLPC
RGGGSAAPATSPPQTPAQTPDELKVIPEDCNLEKSAEQKRDLLERNNKED
DLLNRTVSGSELDLYGGAGGGTKKHSLADTIDTSVTTPISLKTLINDVDE
ELDQQLSAADIAAASLASGLVARRAEPETLSDASVSPTAVVQQQQQQQQQ
LQQPLLQSQPHFVPSSGNILSQVTLYSGSNPSTNPCQSAVQNQGQNSNPN
PNQNPNTNPNQNQQRCSCQPQTSPLPHIKEEEESDQANFKHQTSLKEHQP
LPPPITIATGYCGSCESVHHSSATSSSAGTVPPGGQQTQEYIAGTSSTPS
PRIKLKFRKPHKSCWSRIVLAPIGSAGGSSSATTVIGSNSNETLASSSTT
GGTATTTQNSSSVSVAAHHRLTSSSASALATSHPSNSQLLPTSKMQAEQG
SIGDLQKYHSRYLKNRRHTLANVRFDVENGQGARSPLEGGSPSAGLVLQN
LPQRRESFLYRSDSDFEMSPKSMSRNSSIASERFKEQEASILVDRSHGED
LIVTPFAQILASLRSVRNNLLSLTNVPASNKSRRPNQSSSASRSGNPPGA
PLSQGEEAYTRLATDTIEELDWCLDQLETIQTHRSVSDMASLKFKRMLNK
ELSHFSESSRSGNQISEYICSTFLDKQQEFDLPSLRVEDNPELVAANAAA
GQQSAGQYARSRSPRGPPMSQISGVKRPLSHTNSFTGERLPTFGVETPRE
NELGTLLGELDTWGIQIFSIGEFSVNRPLTCVAYTIFQSRELLTSLMIPP
KTFLNFMSTLEDHYVKDNPFHNSLHAADVTQSTNVLLNTPALEGVFTPLE
VGGALFAACIHDVDHPGLTNQFLVNSSSELALMYNDESVLENHHLAVAFK
LLQNQGCDIFCNMQKKQRQTLRKMVIDIVLSTDMSKHMSLLADLKTMVET
KKVAGSGVLLLDNYTDRIQVLENLVHCADLSNPTKPLPLYKRWVALLMEE
FFLQGDKERESGMDISPMCDRHNATIEKSQVGFIDYIVHPLWETWADLVH
PDAQDILDTLEENRDYYQSMIPPSPPPSGVDENPQEDRIRFQVTLEESDQ
ENLAELEEGDESGGESTTTGTTGTTAASALSGAGGGGGGGGGMAPRTGGC
QNQPQHGGMASFLDH
BO33315.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:02:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dnc-PS | 1209 | CG32498-PS | 1..1209 | 1..1209 | 6269 | 100 | Plus |
| dnc-PB | 1209 | CG32498-PB | 1..1209 | 1..1209 | 6269 | 100 | Plus |
| dnc-PU | 715 | CG32498-PU | 1..715 | 495..1209 | 3703 | 100 | Plus |
| dnc-PT | 715 | CG32498-PT | 1..715 | 495..1209 | 3703 | 100 | Plus |
| dnc-PJ | 1070 | CG32498-PJ | 9..1070 | 99..1209 | 3593 | 68.4 | Plus |
