BO33316.complete Sequence
4267 bp assembled on 2012-09-19
GenBank Submission: KX799152
> BO33316.complete
GAAGTTATCAGTCGACATGTCGAAGCCCCAGAACAACGACACTCTGGAGC
TGGACGACATCCTAAGCCAGCCAGTGAAGGACAAGGAGCGCTTCGCCGCC
TTTATGATGCGCAAGCTTGCCGAAAATAAGCCGGCACAGAATGACAATCT
CTTTGGAAACTTCAAACTTGACTTTGACCTTGATTTCGAGGTTCCACTGA
TCAAGAAGTCTCAGGCTAAGCCCAAGTCCAAACTACCAGAAGTACAGCCC
CTTGGGGAGTTGGTCAGCAAAAACAGTGCCGCCACCGAGAAAGTCAATGA
GCCGCCTGTGGACCAGGCCCCCAATGAGAACGTGCCTCCGCGTCGATCGC
CAACATTGTCGCCCAATAACCGACGTTCCATGCGCCGCAGTGGAAATGTA
CCCGGATCTGATAAACTACGTCGACATGCCATCCGCCGGCGGTCCAGGAG
CTGTGGACGCCAATTGCTTCCAGAGTTTGAGGAGACCGTAAACTTGACCC
GCAGCATATCAAGTCCTGTAAACTTCTTACCAGAAATAAGCAGCACACCT
TGCACAGAGAAACAAAAAGAGGAAGTTGCCAAAAATACAACAAGAGTGGA
AACTGATAAACCAGCGGAAAAACCTATGGAACTATCACAAGAACCAGAGC
CGGAAAATCCGCTGCAGACAAAGGTGACCTCACCTGCCAGGAACCCTATT
CTTGCAGCTGAAATTGAACAAATCTGCAAAGAGCGACAGAGTTCCTTTCA
CAAGAATGTACTGCAGCTGGACTATTCTGGACGGGCACCGTACTCGCGAC
CCCCTACTCCGTCATCACCATCCGTTGCGGGCCTACGACGTACCTACACA
ATGGAAAAGGGCCCAGCTCCAGGCCAGCTGCTGCTATCGCCATCACATCG
CTATGACACACCGAGCAAAATGCCAGTAGTTAAGGCAAAGCGGTTCAATC
AGGAGTTAATGGTCCCGGACACGCCAGAGCGACAAAGTCACGACCCAGCC
TGGCAATCAGAGCCCCAACCGGAGTTCGTAGTGCCGGAAACCCAGCCGCA
GGATCTGGGAGAGTTGGTGCAGACTCTGTCGCGCAGCGCGATCAGCCCAA
TTGTGGTGATAAACACATCCAATTCGAATCGTAGTGTAAGAAGGGACGCT
GTCGCAATGAAATCTGTTCCGACTTCGCCAGTTACGGCGTTATCTTCACC
ACCGATTGCGCCTTCTCCTAGGCGATCCGCCGCTGCCTCTCCCCAGAAAT
CCATTGCACAACTGCCGCGGGTGGAAGAAAATATGGATGCCATAATGACC
GACGACGAAAGCGACGAACATCCCAGCACTGTGCCATTAAATCTAGCTCC
TTCAGGTGGGAACACAACCCGGCAACGGCGTTTGCGCAGTAGTAATCGGG
CTCGAGCTACAATCGAATCTCAGGAGAGCTCTATGCGCTTGCTTAACCTT
CACAAGTCGGTCAATGCCAAAAAGTCAAAGCCGCGAAAGACTGCTATACC
GCTGAATAAGGCTCCAAGTGCCCCCATTAATGGCGAGCAGTTTGCCCGCG
AGCTAACCCGGATGAGCAACTACGAGATTTTGGATTTGCGCAAGCGCAAC
TCGTTGAACGAGATATATCCTTTAAATGGGCACAGAAACCATCGTTCAGA
GAAGCTTATCCTAGAAGAAGAGATTCAGAGGGAGCTGCTACGTAGAAATC
TAATGGATGAGGCCGAAGGTTTGCCAAAACAACAGTCCTCGGATGATTCG
AATGAAGACTATATACCGGTTCCGCCAAAAACACAAAGTCTTCGAACTAA
AAGCAATGATCGATCGCAGGGACGAGGGCGACCACGATCTACTCGTCGTG
ATCTTCCAATGACAACAGAATTGGTAAACTATTTGGGTCTCTCCCAGACT
TTAGAGACTCGACGCAAATCTTCAAAGGACGGCAAGCGTTGTCTGTACAC
AAAGGGTAGCTCGGACCATGAAGATAACGATTCATTATCACCTGTAAAAT
TGCCAAGACTAAGCAAGAGCATCCAAATTGTTCCGCCACCTCCAGTTTCA
CTGCGCTATTCGCAATCTTTGCAAAATCTGCCCTGCTCCGGAAAATTTGA
TTTCGATAATGTCGTGATGGCAGCCCCACCAGATTTCCATGATAGTGTAA
ATAGTGATGCAATTGAGATTGCTCCCCCGCCTCCAGAGTACGTTGTAAAT
ACACGGGGCAGAAGCACAAGTGGGCGAAAGAGCAATAAAAATGACCTGGT
TTTACCTCCACCGGGGTACGAAGGGGGCCAGGAAGAAGAACATGATGAGC
GACCAAGCCAGCCGCGTTGCACAGCCAAAGAACTTCAACAATCCACTCAG
AATGGACGAAGGGCGATGGAGAACGAACTGGTACCACCTCCTATCGAATA
TGTTGAAGAAGAGAATCGCAACAATGAGCAATCAAGGAGATCGACGAAAA
ATGGCAATCTTGTTGATCGAAATACACATAACGCAGTAGAATATTGTGAA
CCGCCAGAGCCACCAGAGTACGACGATAGTGACCATGGGCAAGCAAGTAT
ACTGAGGAGAAGTGGAAAAAAATTGCAGCACTCCAAACAGAGTGTACAAA
AGTCCAATAAGGAACAAATTATTGCACCTTCGTACGAAAATAACGAAGAC
TATGACAGTGACGAGGAACCAATTTACAATGAAGAATACGGAAAAGAGGA
ATCTCAAAATAAAAATGTCACTAGAAGAAAGAGCGATAAGGATGAAATGG
CATCACATACATTAGAATGTATTGAAGGTCCAGATCCAAATTGGAATTCG
TCCTGTAACAAACAGAATCGTAATCACCAGAACGCATCAAAAAGCAAAGA
AAATGATAAGTTAGCCAATCGTTCATCTAAGTCCCAGAAACTCTCAAATC
CCCGCCAGAATGCAGTTGGTACAGAAAAATCCGTAGCTCTAAGCAATCGA
GGGGAAGAATGTACCGAGAAATCATCAGACGTTATGGAATCACTTCGCGT
TAACACACCCACTCCTCCGATTGATCAAAACTCAGATGATGTTCCCAGCA
GAAATCCATCTCCCAGTAGGACTCTTTTGTCTGACGACGTACCCAGCACG
AGTAGAGCGGCGTTGGAGTTTTTGCAGCGTAGTCAGAACATGTCAAAGAG
TCGTCCCCCGGATGAATCAAGCGCGGATGTGGTGTTCAAGAAACCATTGG
CACCTGCACCAAGGGCGAAATCAAAAAAAGGGAAGTCTGAAGTAGACAAA
TTAAAGCTGGCCAAAATGCCGGTGGAAGCTGAGGAACTAAATACTACCGG
TATTCGGAGATCAAAGCGCGGTCAAGTTCCACTTCAGATGAGTTGGTGTC
ACACCATGGATCCTAGCAAGTTTAACTTTATGAGTGGCTTCATAGAGCCT
CGCAGCAAAAACTCAAAGACGAAAAAGGGAAATTTGAGTAAGGCGAAGAA
AGCCAGTGCCACAAAGCCAAAGCCTACTGTAGAGAAGAACTTACCCGACA
ACCGGGGACCATTGTGCAGCAGTACCCCAAGAATTTCTGAAAAGCTGCCA
GGGGCCATACCGCATTCCGAATCCCTTGGCCTGAGTACCTTGACGTGGGA
AGAAACTGAAGTGCAAGCAGAGGCTGAGAAGGTGCCCAAGAAAAGGGGTC
GACCAAAGAAGGCAGTTGGAGGTGTCCAAACTGATACGGAGGCTGAGCCA
GAACCAGAGCCAGAGCCTATGATATCTTCGGTTGCTCCACTTACAAGCGA
TCAGGAAGAGCCTGACGTTCCTGACGAGCAGGCGCCTTATACGGAAGCTG
CGCTAGGTCCCGTCGTATTTTCAACTCCCCTGAGAGACGAGCAGGAAGAA
GCCTCCACTAAACTGATGCAGTGGCTGCGTGGCGTCGGCGATGCACCACC
CAGTGCAAGTATGTCGGATGAAAACGCCAGTGTCTCTTCTGCAAACGAAT
TGATTTTCTGTCAGGTAGATGGTATCGACTACGCTTTCTACAATACAAAG
GAGAAAGCAATGCTGGGTTATATGCGATTCAAGCCATACCAAAAACGTAG
CATGAAACAAGCGAAAGTCCATCCACTTAAACTCCTTGTGCAATTTGGCG
AATTTAATGTGGAGACCTTAGCCGTGGGCGAAGAGAAGGAAGTCCATTCT
GTTCTGCGTGTTGGTGACATGATCGAGATAGATAGGGGCACTAGGTATAG
TATTCAAAATGCGATAGATAAAGTCAGTGTGCTGATGTGTATACGCAGTG
CAAGCTTTCTAGACCAT
BO33316.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:05:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cenp-C-RA | 4236 | CG31258-PA | 1..4233 | 17..4249 | 21150 | 100 | Plus |
| Cenp-C-RB | 4200 | CG31258-PB | 1845..4197 | 1897..4249 | 11750 | 100 | Plus |
| Cenp-C-RB | 4200 | CG31258-PB | 1..1847 | 17..1863 | 9235 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:05:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cenp-C-RA | 4682 | CG31258-RA | 151..4383 | 17..4249 | 21150 | 100 | Plus |
| Cenp-C-RB | 4453 | CG31258-RB | 1995..4347 | 1897..4249 | 11750 | 100 | Plus |
| Cenp-C-RB | 4453 | CG31258-RB | 151..1997 | 17..1863 | 9235 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:05:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8566295..8567730 | 1861..3296 | 7180 | 100 | Plus |
| 3R | 32079331 | 3R | 8564898..8566232 | 527..1861 | 6675 | 100 | Plus |
| 3R | 32079331 | 3R | 8567800..8568438 | 3297..3935 | 3180 | 99.8 | Plus |
| 3R | 32079331 | 3R | 8564329..8564836 | 19..526 | 2540 | 100 | Plus |
| 3R | 32079331 | 3R | 8568510..8568652 | 3936..4078 | 715 | 100 | Plus |
| 3R | 32079331 | 3R | 8568719..8568828 | 4079..4188 | 550 | 100 | Plus |
| 3R | 32079331 | 3R | 8568887..8568949 | 4187..4249 | 315 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:05:01 has no hits.
BO33316.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 11:12:02 Download gff for
BO33316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cenp-C-RA | 130..4362 | 17..4251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:44 Download gff for
BO33316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cenp-C-RA | 151..4383 | 17..4251 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:45 Download gff for
BO33316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cenp-C-RA | 151..4383 | 17..4251 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:45 Download gff for
BO33316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8564327..8564836 | 17..526 | 99 | -> | Plus |
| 3R | 8564898..8566232 | 527..1861 | 100 | -> | Plus |
| 3R | 8566296..8567730 | 1862..3296 | 100 | -> | Plus |
| 3R | 8567800..8568438 | 3297..3935 | 99 | -> | Plus |
| 3R | 8568510..8568652 | 3936..4078 | 100 | -> | Plus |
| 3R | 8568719..8568827 | 4079..4187 | 100 | -> | Plus |
| 3R | 8568888..8568949 | 4188..4251 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:44 Download gff for
BO33316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4390049..4390558 | 17..526 | 99 | -> | Plus |
| arm_3R | 4390620..4391954 | 527..1861 | 100 | -> | Plus |
| arm_3R | 4392018..4393452 | 1862..3296 | 100 | -> | Plus |
| arm_3R | 4393522..4394160 | 3297..3935 | 99 | -> | Plus |
| arm_3R | 4394232..4394374 | 3936..4078 | 100 | -> | Plus |
| arm_3R | 4394441..4394549 | 4079..4187 | 100 | -> | Plus |
| arm_3R | 4394610..4394671 | 4188..4251 | 96 | | Plus |
BO33316.pep Sequence
Translation from 16 to 4267
> BO33316.pep
MSKPQNNDTLELDDILSQPVKDKERFAAFMMRKLAENKPAQNDNLFGNFK
LDFDLDFEVPLIKKSQAKPKSKLPEVQPLGELVSKNSAATEKVNEPPVDQ
APNENVPPRRSPTLSPNNRRSMRRSGNVPGSDKLRRHAIRRRSRSCGRQL
LPEFEETVNLTRSISSPVNFLPEISSTPCTEKQKEEVAKNTTRVETDKPA
EKPMELSQEPEPENPLQTKVTSPARNPILAAEIEQICKERQSSFHKNVLQ
LDYSGRAPYSRPPTPSSPSVAGLRRTYTMEKGPAPGQLLLSPSHRYDTPS
KMPVVKAKRFNQELMVPDTPERQSHDPAWQSEPQPEFVVPETQPQDLGEL
VQTLSRSAISPIVVINTSNSNRSVRRDAVAMKSVPTSPVTALSSPPIAPS
PRRSAAASPQKSIAQLPRVEENMDAIMTDDESDEHPSTVPLNLAPSGGNT
TRQRRLRSSNRARATIESQESSMRLLNLHKSVNAKKSKPRKTAIPLNKAP
SAPINGEQFARELTRMSNYEILDLRKRNSLNEIYPLNGHRNHRSEKLILE
EEIQRELLRRNLMDEAEGLPKQQSSDDSNEDYIPVPPKTQSLRTKSNDRS
QGRGRPRSTRRDLPMTTELVNYLGLSQTLETRRKSSKDGKRCLYTKGSSD
HEDNDSLSPVKLPRLSKSIQIVPPPPVSLRYSQSLQNLPCSGKFDFDNVV
MAAPPDFHDSVNSDAIEIAPPPPEYVVNTRGRSTSGRKSNKNDLVLPPPG
YEGGQEEEHDERPSQPRCTAKELQQSTQNGRRAMENELVPPPIEYVEEEN
RNNEQSRRSTKNGNLVDRNTHNAVEYCEPPEPPEYDDSDHGQASILRRSG
KKLQHSKQSVQKSNKEQIIAPSYENNEDYDSDEEPIYNEEYGKEESQNKN
VTRRKSDKDEMASHTLECIEGPDPNWNSSCNKQNRNHQNASKSKENDKLA
NRSSKSQKLSNPRQNAVGTEKSVALSNRGEECTEKSSDVMESLRVNTPTP
PIDQNSDDVPSRNPSPSRTLLSDDVPSTSRAALEFLQRSQNMSKSRPPDE
SSADVVFKKPLAPAPRAKSKKGKSEVDKLKLAKMPVEAEELNTTGIRRSK
RGQVPLQMSWCHTMDPSKFNFMSGFIEPRSKNSKTKKGNLSKAKKASATK
PKPTVEKNLPDNRGPLCSSTPRISEKLPGAIPHSESLGLSTLTWEETEVQ
AEAEKVPKKRGRPKKAVGGVQTDTEAEPEPEPEPMISSVAPLTSDQEEPD
VPDEQAPYTEAALGPVVFSTPLRDEQEEASTKLMQWLRGVGDAPPSASMS
DENASVSSANELIFCQVDGIDYAFYNTKEKAMLGYMRFKPYQKRSMKQAK
VHPLKLLVQFGEFNVETLAVGEEKEVHSVLRVGDMIEIDRGTRYSIQNAI
DKVSVLMCIRSASFLDH
BO33316.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:39:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cenp-C-PA | 1411 | CG31258-PA | 1..1411 | 1..1411 | 7295 | 100 | Plus |
| Cenp-C-PB | 1399 | CG31258-PB | 1..1399 | 1..1411 | 7213 | 99.1 | Plus |
