Clone BO33318 Report

Search the DGRC for BO33318

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:333
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptCG1814-RA
Protein status:BO33318.pep: Imported from assembly
Sequenced Size:1678

Clone Sequence Records

BO33318.complete Sequence

1678 bp assembled on 2012-09-19

GenBank Submission: KX798555

> BO33318.complete
GAAGTTATCAGTCGACATGTGCGCGGCAGGCAGTCCCATCGTCAGTGCTC
TCCTTCGGCAGAATGTGCTCCTGCGAGCTGGTGGTGTCCTCCGGAGCTGG
GACCCCATCTCCTCCAGCCTGTCCCCCTCGCCGTGCAAACCAAACTATAG
TTTCGAGGCGCGCGCTTTCGCGTCGGACGCTGGAGCTTCCGCTCCAGCTG
CAACCGCCCAGATCTCGCACCCAAAAACAGTGAGTGATTTCCAAAAGCTT
CACGAAGCCACCAAAAAGAAGTTCCAATCCAAGAAGCTGCCCTCCGATGT
GCATCCAGATGCGGTCTTCGCCTGCAACGAGCTCGATCTCAGCGAGGTGC
AGGTGTACGGATTCGATTACGACTACACGCTGGCCTGCTATAAGCCCATC
CTGGAGGACCTGCTGTACAATCTGGCTCGCGAGATGCTGGTGAAGAGGTT
CCGCTACCCGGAGGACATCCTCCAGCTGGAGTACGAACCGAACTTTGCGG
TACGCGGCCTGCACTACGACGTGGAAAAGGGGCTGCTGGTGAAACTGGAC
AGTTTCCTGCAGCTACAGCTGGGCTCGGTATACAGGGGACGTACCAAAGT
GGAGGCGGATGAGGTGCTGAAGCTCTACCACAACCGCCTGCTGCCTATTG
CCTACGTGGAGGGGCCGAACAATAGCTACAGGCATAACACCAACTCCAAA
ATGGTGCAATTGGCCGACCTGTTTTCTGTACCTGAAATGTGCCTGCTGTG
CAATGTAATCGAATATTTTGAACGCAATCGAATCGACTACAATCCAGAGA
TTGTTTTCCATGACACCAGGACCGCCATGGGCTCCTGCCATCCCATTATG
CACGGCAAGGTGATGCGGAACACTGAGAAGTACATAGAACGAAACCCGAA
GCTGGTCAAGTTCTTCGAGAAGCTGCAGCAGGCGGGCAAGAATCTCTTTC
TAGTCACCAATAGCCCGTACTCGTTTGTAAACTGTGGCATGTCCTTTCTG
GTCGGCGCCAACTGGCGTGATTTCTTCGATGTGGTCATCGTGCAGGCCCG
CAAACCAAAGTTCTTTACGGATGAATCTCGACCAATAAGGCTATTCGACG
AGCGAACGCAGTCACACCTATGGGATCGGGTATTCAAGCTGGAGAAGGGA
AAAATCTACTACGAGGGTTCGGTGAGACAGCTTCAAGAGCTGAAGGGCTG
GCGTGGTCACTCTGTGCTCTATTTCGGAGATCATCCGTACAGCGACCTAG
CAGATGTTACTCTGAAGCACAGCTGGAGGACAGGAGCCATTATTAGCGAA
CTGGCTCACGAAATTAAAACCCTCAATCGTAAGGACTTCAAGATGAGCGC
CAACTGGCTGCAAATGCTGACGCAGCTCATCGAGGACACCCAGGACGATG
ATAGCGAGGCAGCGCAGATCTGCCTAAAGGAGTGGATGGAGGAGCGGGAT
CAGTTGCGCAACAAAACGAAGAACGTGTTCAACGAGCAGTTTGGCAGCGT
TTTCCGCACCTACCACAACCCCACTTACTTCTCAAGACGCCTCTTCCGCT
TTGCCGACATCTACACCAGCGACATAACCAACCTGCTCAAGTTCTCCACC
ACCCACACCTTTTATCCCCGACGGGGTGTAATGCCCCACGAATATGCCTC
CCACTTTATCGCAAGCTTTCTAGACCAT

BO33318.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-RA 1647 CG1814-PA 1..1644 17..1660 8220 100 Plus
CG1814-RC 1389 CG1814-PC 5..1386 279..1660 6910 100 Plus
CG1814-RB 1230 CG1814-PB 1..1227 434..1660 6135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:05:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-RA 1929 CG1814-RA 126..1769 17..1660 8220 100 Plus
CG1814-RB 1880 CG1814-RB 339..1720 279..1660 6910 100 Plus
CG1814-RC 1673 CG1814-RC 132..1513 279..1660 6910 100 Plus
CG1814-RB 1880 CG1814-RB 126..338 17..229 1065 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:05:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 9579963..9580366 279..682 2020 100 Plus
2R 25286936 2R 9580451..9580747 682..978 1485 100 Plus
2R 25286936 2R 9579575..9579836 17..278 1310 100 Plus
2R 25286936 2R 9581485..9581687 1458..1660 1015 100 Plus
2R 25286936 2R 9580818..9581005 979..1166 940 100 Plus
2R 25286936 2R 9581266..9581417 1307..1458 760 100 Plus
2R 25286936 2R 9581064..9581206 1164..1306 715 100 Plus
Blast to na_te.dros performed on 2014-11-28 12:05:12 has no hits.

BO33318.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 11:12:03 Download gff for BO33318.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RA 124..1767 17..1662 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:46 Download gff for BO33318.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RA 126..1769 17..1662 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:49 Download gff for BO33318.complete
Subject Subject Range Query Range Percent Splice Strand
CG1814-RA 126..1769 17..1662 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:49 Download gff for BO33318.complete
Subject Subject Range Query Range Percent Splice Strand
2R 9579575..9579836 17..278 100 -> Plus
2R 9579963..9580366 279..682 100 -> Plus
2R 9580452..9580747 683..978 100 -> Plus
2R 9580818..9581004 979..1165 100 -> Plus
2R 9581066..9581206 1166..1306 100 -> Plus
2R 9581266..9581417 1307..1458 100 -> Plus
2R 9581486..9581687 1459..1662 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:46 Download gff for BO33318.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5467080..5467341 17..278 100 -> Plus
arm_2R 5467468..5467871 279..682 100 -> Plus
arm_2R 5467957..5468252 683..978 100 -> Plus
arm_2R 5468323..5468509 979..1165 100 -> Plus
arm_2R 5468571..5468711 1166..1306 100 -> Plus
arm_2R 5468771..5468922 1307..1458 100 -> Plus
arm_2R 5468991..5469192 1459..1662 99   Plus

BO33318.pep Sequence

Translation from 16 to 1678

> BO33318.pep
MCAAGSPIVSALLRQNVLLRAGGVLRSWDPISSSLSPSPCKPNYSFEARA
FASDAGASAPAATAQISHPKTVSDFQKLHEATKKKFQSKKLPSDVHPDAV
FACNELDLSEVQVYGFDYDYTLACYKPILEDLLYNLAREMLVKRFRYPED
ILQLEYEPNFAVRGLHYDVEKGLLVKLDSFLQLQLGSVYRGRTKVEADEV
LKLYHNRLLPIAYVEGPNNSYRHNTNSKMVQLADLFSVPEMCLLCNVIEY
FERNRIDYNPEIVFHDTRTAMGSCHPIMHGKVMRNTEKYIERNPKLVKFF
EKLQQAGKNLFLVTNSPYSFVNCGMSFLVGANWRDFFDVVIVQARKPKFF
TDESRPIRLFDERTQSHLWDRVFKLEKGKIYYEGSVRQLQELKGWRGHSV
LYFGDHPYSDLADVTLKHSWRTGAIISELAHEIKTLNRKDFKMSANWLQM
LTQLIEDTQDDDSEAAQICLKEWMEERDQLRNKTKNVFNEQFGSVFRTYH
NPTYFSRRLFRFADIYTSDITNLLKFSTTHTFYPRRGVMPHEYASHFIAS
FLDH

BO33318.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG1814-PA 548 CG1814-PA 1..548 1..548 2903 100 Plus
CG1814-PC 462 CG1814-PC 2..462 88..548 2457 99.8 Plus
CG1814-PB 409 CG1814-PB 1..409 140..548 2182 100 Plus
CG32549-PD 581 CG32549-PD 29..481 100..542 491 29.8 Plus
CG32549-PF 612 CG32549-PF 60..512 100..542 491 29.8 Plus