BO33318.complete Sequence
1678 bp assembled on 2012-09-19
GenBank Submission: KX798555
> BO33318.complete
GAAGTTATCAGTCGACATGTGCGCGGCAGGCAGTCCCATCGTCAGTGCTC
TCCTTCGGCAGAATGTGCTCCTGCGAGCTGGTGGTGTCCTCCGGAGCTGG
GACCCCATCTCCTCCAGCCTGTCCCCCTCGCCGTGCAAACCAAACTATAG
TTTCGAGGCGCGCGCTTTCGCGTCGGACGCTGGAGCTTCCGCTCCAGCTG
CAACCGCCCAGATCTCGCACCCAAAAACAGTGAGTGATTTCCAAAAGCTT
CACGAAGCCACCAAAAAGAAGTTCCAATCCAAGAAGCTGCCCTCCGATGT
GCATCCAGATGCGGTCTTCGCCTGCAACGAGCTCGATCTCAGCGAGGTGC
AGGTGTACGGATTCGATTACGACTACACGCTGGCCTGCTATAAGCCCATC
CTGGAGGACCTGCTGTACAATCTGGCTCGCGAGATGCTGGTGAAGAGGTT
CCGCTACCCGGAGGACATCCTCCAGCTGGAGTACGAACCGAACTTTGCGG
TACGCGGCCTGCACTACGACGTGGAAAAGGGGCTGCTGGTGAAACTGGAC
AGTTTCCTGCAGCTACAGCTGGGCTCGGTATACAGGGGACGTACCAAAGT
GGAGGCGGATGAGGTGCTGAAGCTCTACCACAACCGCCTGCTGCCTATTG
CCTACGTGGAGGGGCCGAACAATAGCTACAGGCATAACACCAACTCCAAA
ATGGTGCAATTGGCCGACCTGTTTTCTGTACCTGAAATGTGCCTGCTGTG
CAATGTAATCGAATATTTTGAACGCAATCGAATCGACTACAATCCAGAGA
TTGTTTTCCATGACACCAGGACCGCCATGGGCTCCTGCCATCCCATTATG
CACGGCAAGGTGATGCGGAACACTGAGAAGTACATAGAACGAAACCCGAA
GCTGGTCAAGTTCTTCGAGAAGCTGCAGCAGGCGGGCAAGAATCTCTTTC
TAGTCACCAATAGCCCGTACTCGTTTGTAAACTGTGGCATGTCCTTTCTG
GTCGGCGCCAACTGGCGTGATTTCTTCGATGTGGTCATCGTGCAGGCCCG
CAAACCAAAGTTCTTTACGGATGAATCTCGACCAATAAGGCTATTCGACG
AGCGAACGCAGTCACACCTATGGGATCGGGTATTCAAGCTGGAGAAGGGA
AAAATCTACTACGAGGGTTCGGTGAGACAGCTTCAAGAGCTGAAGGGCTG
GCGTGGTCACTCTGTGCTCTATTTCGGAGATCATCCGTACAGCGACCTAG
CAGATGTTACTCTGAAGCACAGCTGGAGGACAGGAGCCATTATTAGCGAA
CTGGCTCACGAAATTAAAACCCTCAATCGTAAGGACTTCAAGATGAGCGC
CAACTGGCTGCAAATGCTGACGCAGCTCATCGAGGACACCCAGGACGATG
ATAGCGAGGCAGCGCAGATCTGCCTAAAGGAGTGGATGGAGGAGCGGGAT
CAGTTGCGCAACAAAACGAAGAACGTGTTCAACGAGCAGTTTGGCAGCGT
TTTCCGCACCTACCACAACCCCACTTACTTCTCAAGACGCCTCTTCCGCT
TTGCCGACATCTACACCAGCGACATAACCAACCTGCTCAAGTTCTCCACC
ACCCACACCTTTTATCCCCGACGGGGTGTAATGCCCCACGAATATGCCTC
CCACTTTATCGCAAGCTTTCTAGACCAT
BO33318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-RA | 1647 | CG1814-PA | 1..1644 | 17..1660 | 8220 | 100 | Plus |
CG1814-RC | 1389 | CG1814-PC | 5..1386 | 279..1660 | 6910 | 100 | Plus |
CG1814-RB | 1230 | CG1814-PB | 1..1227 | 434..1660 | 6135 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:05:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-RA | 1929 | CG1814-RA | 126..1769 | 17..1660 | 8220 | 100 | Plus |
CG1814-RB | 1880 | CG1814-RB | 339..1720 | 279..1660 | 6910 | 100 | Plus |
CG1814-RC | 1673 | CG1814-RC | 132..1513 | 279..1660 | 6910 | 100 | Plus |
CG1814-RB | 1880 | CG1814-RB | 126..338 | 17..229 | 1065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:05:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 9579963..9580366 | 279..682 | 2020 | 100 | Plus |
2R | 25286936 | 2R | 9580451..9580747 | 682..978 | 1485 | 100 | Plus |
2R | 25286936 | 2R | 9579575..9579836 | 17..278 | 1310 | 100 | Plus |
2R | 25286936 | 2R | 9581485..9581687 | 1458..1660 | 1015 | 100 | Plus |
2R | 25286936 | 2R | 9580818..9581005 | 979..1166 | 940 | 100 | Plus |
2R | 25286936 | 2R | 9581266..9581417 | 1307..1458 | 760 | 100 | Plus |
2R | 25286936 | 2R | 9581064..9581206 | 1164..1306 | 715 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:05:12 has no hits.
BO33318.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 11:12:03 Download gff for
BO33318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RA | 124..1767 | 17..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:46 Download gff for
BO33318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RA | 126..1769 | 17..1662 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:49 Download gff for
BO33318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1814-RA | 126..1769 | 17..1662 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:49 Download gff for
BO33318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 9579575..9579836 | 17..278 | 100 | -> | Plus |
2R | 9579963..9580366 | 279..682 | 100 | -> | Plus |
2R | 9580452..9580747 | 683..978 | 100 | -> | Plus |
2R | 9580818..9581004 | 979..1165 | 100 | -> | Plus |
2R | 9581066..9581206 | 1166..1306 | 100 | -> | Plus |
2R | 9581266..9581417 | 1307..1458 | 100 | -> | Plus |
2R | 9581486..9581687 | 1459..1662 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:46 Download gff for
BO33318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5467080..5467341 | 17..278 | 100 | -> | Plus |
arm_2R | 5467468..5467871 | 279..682 | 100 | -> | Plus |
arm_2R | 5467957..5468252 | 683..978 | 100 | -> | Plus |
arm_2R | 5468323..5468509 | 979..1165 | 100 | -> | Plus |
arm_2R | 5468571..5468711 | 1166..1306 | 100 | -> | Plus |
arm_2R | 5468771..5468922 | 1307..1458 | 100 | -> | Plus |
arm_2R | 5468991..5469192 | 1459..1662 | 99 | | Plus |
BO33318.pep Sequence
Translation from 16 to 1678
> BO33318.pep
MCAAGSPIVSALLRQNVLLRAGGVLRSWDPISSSLSPSPCKPNYSFEARA
FASDAGASAPAATAQISHPKTVSDFQKLHEATKKKFQSKKLPSDVHPDAV
FACNELDLSEVQVYGFDYDYTLACYKPILEDLLYNLAREMLVKRFRYPED
ILQLEYEPNFAVRGLHYDVEKGLLVKLDSFLQLQLGSVYRGRTKVEADEV
LKLYHNRLLPIAYVEGPNNSYRHNTNSKMVQLADLFSVPEMCLLCNVIEY
FERNRIDYNPEIVFHDTRTAMGSCHPIMHGKVMRNTEKYIERNPKLVKFF
EKLQQAGKNLFLVTNSPYSFVNCGMSFLVGANWRDFFDVVIVQARKPKFF
TDESRPIRLFDERTQSHLWDRVFKLEKGKIYYEGSVRQLQELKGWRGHSV
LYFGDHPYSDLADVTLKHSWRTGAIISELAHEIKTLNRKDFKMSANWLQM
LTQLIEDTQDDDSEAAQICLKEWMEERDQLRNKTKNVFNEQFGSVFRTYH
NPTYFSRRLFRFADIYTSDITNLLKFSTTHTFYPRRGVMPHEYASHFIAS
FLDH
BO33318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1814-PA | 548 | CG1814-PA | 1..548 | 1..548 | 2903 | 100 | Plus |
CG1814-PC | 462 | CG1814-PC | 2..462 | 88..548 | 2457 | 99.8 | Plus |
CG1814-PB | 409 | CG1814-PB | 1..409 | 140..548 | 2182 | 100 | Plus |
CG32549-PD | 581 | CG32549-PD | 29..481 | 100..542 | 491 | 29.8 | Plus |
CG32549-PF | 612 | CG32549-PF | 60..512 | 100..542 | 491 | 29.8 | Plus |