BO33320.complete Sequence
1177 bp assembled on 2012-08-22
GenBank Submission: KX794536
> BO33320.complete
GAAGTTATCAGTCGACATGAAGCCATTCTTTATTGCCGCAGCGTTGCTGA
TCTCGACGGTGTCCGCCTCTTGGCACGGAGCCGTCTCCACACAGTACCAG
CACCTGGACCCGCACAGCCACACCTACTCCTACGGATACGCCGATCCCAA
CTCACAGAAGCACGAGACGCGAAGCCATGACGGCACCACGCACGGCTCCT
ACTCCTACGTGGATGGTCACGGTCATGTGCAGTCGGTGTCCTACACCGCT
GATCCGCACCATGGCTTCAACGCCGTGGGCACCAACCTGCCTCAGGCTCC
TCAAGTTCATGCCGCTCCCGTTTACGCTGCCGCCCACGCCCATGGCGCCT
ATGCTCCTTACGCCCACGGACCCATCCACATCCCGGTGCTGACCCACGGA
GGCGTCCCCGTCGATACTCCCGAAGTGCAGCACGCCAAGGCCGCCCATGC
CGCTGCCCACGCTGCTGCCGCCCACAATGCCGGAGGACACCACCTGTACA
AGCGGTCTATTTACGGCGGAGGATGGGCCTACGGACAAGCCGCCCATGTG
CCGCTGACTCATGGAGGTGTGCCCGTTGATACTCCCGATGTGCAGGCCGC
CAAGGCCGAGCACTATGCCGCCCACGCCAAAGCCCTTGGCCATGTAGCTC
ATGCCCACGGTGCTCCCGTTGAGACACCCGAGGTGCAGCACGCCAAGGCT
GCGCACTTTGCCGCCCATGCTGCCGCCCGTTCTGGACATGCCGTTTCCCC
CATTAACCACGGTGGCTATCACGTGCCGGTAATCCACAATGGAGTACCCG
TCGATACGCCCGAGGTGCAGCATGCCAAGGCCGCCCACTACGCCGCCCTG
TCCCAGGCCTCCGCCCACGGAGGAGCCTCGCATGGATCCTGGGATGATGG
CAGCTACGACGGACGCTGGGAACAGAGCCACAGCAGCCACAACAGTTACG
CCTCCGGCTATGCGCACAAGGGACCCATCCACATCCCGGTCATCCACAAC
GGAGTGCCCGTGGAGCCTGCCGAGGTGCAGCACGCCCGTGCCGCGCATCT
GAATGCGTTGGCCGCCGCCGGACATGGAGCTCCCGCCAGCCATGGTAGCT
ACTACGGTGGCAATGGACACGAGGATGATGGCCAGTACCACGCGCACTAT
GACCACTATGCAAGCTTTCTAGACCAT
BO33320.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:24:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr92F-RA | 1146 | CG5494-PA | 1..1143 | 17..1159 | 5715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr92F-RA | 1858 | CG5494-RA | 161..1303 | 17..1159 | 5715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:24:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20671136..20672266 | 29..1159 | 5655 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:24:31 has no hits.
BO33320.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:23 Download gff for
BO33320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr92F-RA | 161..1303 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:40 Download gff for
BO33320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr92F-RA | 161..1303 | 17..1161 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:30 Download gff for
BO33320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr92F-RA | 161..1303 | 17..1161 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:30 Download gff for
BO33320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20671136..20672266 | 29..1161 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:40 Download gff for
BO33320.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16496858..16497988 | 29..1161 | 99 | | Plus |
BO33320.pep Sequence
Translation from 16 to 1177
> BO33320.pep
MKPFFIAAALLISTVSASWHGAVSTQYQHLDPHSHTYSYGYADPNSQKHE
TRSHDGTTHGSYSYVDGHGHVQSVSYTADPHHGFNAVGTNLPQAPQVHAA
PVYAAAHAHGAYAPYAHGPIHIPVLTHGGVPVDTPEVQHAKAAHAAAHAA
AAHNAGGHHLYKRSIYGGGWAYGQAAHVPLTHGGVPVDTPDVQAAKAEHY
AAHAKALGHVAHAHGAPVETPEVQHAKAAHFAAHAAARSGHAVSPINHGG
YHVPVIHNGVPVDTPEVQHAKAAHYAALSQASAHGGASHGSWDDGSYDGR
WEQSHSSHNSYASGYAHKGPIHIPVIHNGVPVEPAEVQHARAAHLNALAA
AGHGAPASHGSYYGGNGHEDDGQYHAHYDHYASFLDH
BO33320.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr92F-PA | 381 | CG5494-PA | 1..381 | 1..381 | 2112 | 100 | Plus |
| Cpr72Ea-PA | 341 | CG4818-PA | 49..293 | 37..274 | 229 | 32.3 | Plus |
| Cpr72Ec-PA | 429 | CG4784-PA | 8..131 | 6..155 | 178 | 35.3 | Plus |
| Cpr92A-PA | 245 | CG6240-PA | 77..245 | 40..230 | 172 | 34.7 | Plus |
| Cpr62Bb-PC | 194 | CG13935-PC | 7..170 | 4..172 | 169 | 32.2 | Plus |
