BO33322.complete Sequence
1663 bp assembled on 2012-09-19
GenBank Submission: KX796185
> BO33322.complete
GAAGTTATCAGTCGACATGCTGGCTGCTTTGATTTACACTATTTTGGCGA
TTTTACTGAGTGTTCTGGCCACGTCCTACATATGCATTATATATGGAGTC
AAGCGCCGCGTTCTGCAGCCCGTTAAAACAAAGAATTCAACCGAAATCAA
TCACAATGCTTATCAAAAATATACCCAGGCTCCAGGACCACGACCATGGC
CCATCATTGGTAATCTTCATCTGCTGGATCGATACAGGGATAGTCCCTTT
GCGGGATTCACGGCGTTGGCACAGCAATACGGAGACATATACTCCCTGAC
CTTCGGACACACCCGCTGTCTGGTGGTGAACAACTTGGAGCTGATCCGCG
AGGTGCTCAATCAAAATGGCAAGGTGATGAGCGGGCGGCCAGACTTCATA
CGATATCATAAACTATTTGGTGGCGAGCGGAGCAATTCGTTGGCTCTGTG
CGATTGGTCACAGCTGCAGCAGAAGAGAAGGAATCTGGCCAGGCGTCACT
GCTCGCCCAGGGAATTTTCCTGCTTCTACATGAAAATGTCCCAGATTGGT
TGCGAGGAAATGGAGCACTGGAATCGGGAGCTGGGAAACCAACTCGTTCC
TGGAGAGCCGATCAACATCAAGCCTCTGATTCTGAAGGCCTGTGCAAATA
TGTTTAGTCAGTACATGTGTTCGTTGAGGTTCGACTACGATGATGTGGAC
TTCCAACAGATTGTTCAATACTTCGATGAGATATTCTGGGAAATCAATCA
GGGACATCCGCTGGATTTTCTACCCTGGCTATATCCCTTCTACCAGCGAC
ACCTGAACAAGATCATCAACTGGTCCTCGACTATCAGGGGATTCATAATG
GAAAGGATTATCCGGCATCGGGAGCTGAGCGTCGATTTGGATGAACCAGA
TCGGGACTTCACAGATGCTCTACTTAAAAGCCTGCTTGAAGATAAAGATG
TCTCCCGGAACACGATTATCTTCATGCTGGAGGATTTCATTGGTGGACAT
TCAGCGGTTGGAAATCTAGTAATGCTAGTGCTGGCCTATATAGCCAAAAA
TGTGGATATTGGAAGGAGAATACAAGAGGAAATTGACGCAATTATTGAAG
AGGAAAATAGGTCAATTAATTTGCTGGACATGAATGCTATGCCCTACACG
ATGGCGACGATTTTCGAGGTGCTGCGATATTCATCCTCCCCAATTGTTCC
ACATGTGGCCACCGAGGACACAGTGATCTCTGGCTATGGGGTAACCAAGG
GCACCATTGTGTTCATCAACAATTATGTGCTAAACACCAGCGAGAAATTC
TGGGTAAATCCCAAGGAATTTAATCCATTAAGATTTTTGGAACCGTCAAA
GGAACAAAGCCCAAAAAATTCCAAAGGTTCTGATTCTGGCATCGAAAGTG
ATAATGAAAAACTTCAACTAAAGAGGAATATTCCGCACTTTCTGCCCTTT
AGCATCGGGAAGCGGACTTGCATCGGCCAGAATTTGGTGAGAGGATTTGG
TTTTCTGGTCGTGGTCAACGTAATGCAGAGATATAATATCAGCAGTCATA
ATCCTTCGACGATTAAGATCAGTCCGGAGAGTTTGGCACTGCCTGCCGAT
TGTTTTCCATTGGTCTTGACACCCAGGGAAAAGATCGGACCACTAGCAAG
CTTTCTAGACCAT
BO33322.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:04:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spo-RC | 1632 | CG10594-PC | 1..1629 | 17..1645 | 8145 | 100 | Plus |
| spo-RA | 1632 | CG10594-PA | 1..1629 | 17..1645 | 8145 | 100 | Plus |
| spok-RB | 1662 | CG41624-PB | 883..1020 | 914..1051 | 270 | 79.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:04:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spo-RC | 2489 | CG10594-RC | 354..1982 | 17..1645 | 8145 | 100 | Plus |
| spo-RA | 2187 | CG10594-RA | 52..1680 | 17..1645 | 8145 | 100 | Plus |
| spok-RB | 1767 | CG41624-RB | 883..1020 | 914..1051 | 270 | 79.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:04:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5590590..5592218 | 1645..17 | 8145 | 100 | Minus |
| 3R | 32079331 | 3R | 3353602..3353739 | 914..1051 | 270 | 79.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:04:56 has no hits.
BO33322.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 11:12:01 Download gff for
BO33322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spo-RA | 360..1988 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:41 Download gff for
BO33322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spo-RA | 52..1680 | 17..1647 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:43 Download gff for
BO33322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spo-RA | 52..1680 | 17..1647 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:43 Download gff for
BO33322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5590588..5592218 | 17..1647 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:41 Download gff for
BO33322.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5583688..5585318 | 17..1647 | 99 | | Minus |
BO33322.pep Sequence
Translation from 16 to 1663
> BO33322.pep
MLAALIYTILAILLSVLATSYICIIYGVKRRVLQPVKTKNSTEINHNAYQ
KYTQAPGPRPWPIIGNLHLLDRYRDSPFAGFTALAQQYGDIYSLTFGHTR
CLVVNNLELIREVLNQNGKVMSGRPDFIRYHKLFGGERSNSLALCDWSQL
QQKRRNLARRHCSPREFSCFYMKMSQIGCEEMEHWNRELGNQLVPGEPIN
IKPLILKACANMFSQYMCSLRFDYDDVDFQQIVQYFDEIFWEINQGHPLD
FLPWLYPFYQRHLNKIINWSSTIRGFIMERIIRHRELSVDLDEPDRDFTD
ALLKSLLEDKDVSRNTIIFMLEDFIGGHSAVGNLVMLVLAYIAKNVDIGR
RIQEEIDAIIEEENRSINLLDMNAMPYTMATIFEVLRYSSSPIVPHVATE
DTVISGYGVTKGTIVFINNYVLNTSEKFWVNPKEFNPLRFLEPSKEQSPK
NSKGSDSGIESDNEKLQLKRNIPHFLPFSIGKRTCIGQNLVRGFGFLVVV
NVMQRYNISSHNPSTIKISPESLALPADCFPLVLTPREKIGPLASFLDH
BO33322.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:39:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spo-PC | 543 | CG10594-PC | 1..543 | 1..543 | 2860 | 100 | Plus |
| spo-PA | 543 | CG10594-PA | 1..543 | 1..543 | 2860 | 100 | Plus |
| spok-PB | 553 | CG41624-PB | 1..552 | 1..537 | 1694 | 58.1 | Plus |
| Cyp18a1-PB | 538 | CG6816-PB | 55..490 | 56..509 | 316 | 24.7 | Plus |
| Cyp18a1-PA | 538 | CG6816-PA | 55..490 | 56..509 | 316 | 24.7 | Plus |
