BO33330.complete Sequence
550 bp assembled on 2012-08-22
GenBank Submission: KX795742
> BO33330.complete
GAAGTTATCAGTCGACATGTTTTGTTTACTTTTGCGCCGCTCTGCAGTTC
ATAATTCCTGCAAATTAATCAGTAAACAGATTGCCAAGCCCGCGTTCTAC
ACACCCCACAATGCTCTGCACACCACAATACCGCGGCGGCATGGCGAGTT
CGAATGGCAGGATCCCAAGTCCACGGATGAAATAGTGAACATCACATATG
TGGACAAGGATGGAAAGCGCACCAAGGTCCAGGGCAAAGTGGGCGACAAT
GTTCTGTACTTGGCCCATCGCCATGGAATCGAGATGGAAGGCGCCTGTGA
GGCTTCGCTGGCCTGCACCACCTGTCACGTGTACGTCCAGCATGATTACC
TGCAGAAGTTAAAAGAGGCCGAGGAGCAGGAGGACGACCTGCTGGATATG
GCGCCATTTCTGCGCGAGAACTCCCGGCTCGGCTGTCAGATACTCCTCGA
CAAGAGTATGGAGGGCATGGAACTGGAGCTGCCCAAGGCCACCAGGAACT
TCTACGTCGATGGGCACAAGCCCAAGCCACATGCAAGCTTTCTAGACCAT
BO33330.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fdxh-RB | 519 | CG4205-PB | 1..516 | 17..532 | 2580 | 100 | Plus |
| Fdxh-RA | 519 | CG4205-PA | 1..516 | 17..532 | 2580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:26:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fdxh-RB | 723 | CG4205-RB | 49..564 | 17..532 | 2580 | 100 | Plus |
| Fdxh-RA | 715 | CG4205-RA | 41..556 | 17..532 | 2580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:26:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9370354..9370702 | 532..184 | 1745 | 100 | Minus |
| 3L | 28110227 | 3L | 9370904..9371018 | 131..17 | 575 | 100 | Minus |
| 3L | 28110227 | 3L | 9370765..9370816 | 183..132 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:26:38 has no hits.
BO33330.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:29 Download gff for
BO33330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdxh-RB | 60..564 | 28..534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:05 Download gff for
BO33330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdxh-RA | 52..556 | 28..534 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:15 Download gff for
BO33330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fdxh-RA | 52..556 | 28..534 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:15 Download gff for
BO33330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9370765..9370816 | 132..183 | 100 | <- | Minus |
| 3L | 9370904..9371007 | 28..131 | 100 | | Minus |
| 3L | 9370352..9370702 | 184..534 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:05 Download gff for
BO33330.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9363452..9363802 | 184..534 | 99 | <- | Minus |
| arm_3L | 9363865..9363916 | 132..183 | 100 | <- | Minus |
| arm_3L | 9364004..9364107 | 28..131 | 100 | | Minus |
BO33330.pep Sequence
Translation from 16 to 550
> BO33330.pep
MFCLLLRRSAVHNSCKLISKQIAKPAFYTPHNALHTTIPRRHGEFEWQDP
KSTDEIVNITYVDKDGKRTKVQGKVGDNVLYLAHRHGIEMEGACEASLAC
TTCHVYVQHDYLQKLKEAEEQEDDLLDMAPFLRENSRLGCQILLDKSMEG
MELELPKATRNFYVDGHKPKPHASFLDH
BO33330.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fdxh-PB | 172 | CG4205-PB | 1..172 | 1..172 | 927 | 100 | Plus |
| Fdxh-PA | 172 | CG4205-PA | 1..172 | 1..172 | 927 | 100 | Plus |
| CG1319-PB | 152 | CG1319-PB | 37..143 | 53..156 | 228 | 42.1 | Plus |
