BO33331.complete Sequence
3295 bp assembled on 2012-09-19
GenBank Submission: KX796340
> BO33331.complete
GAAGTTATCAGTCGACATGGATGATGCTACCTCCCAAAACTCGGCTGCAA
CGCCCATGACACGGGAGAACATTCCGTTGCTGAATCGTCAGCGAAATCGC
TGGTATCTCTTTAGCTGCTGGCGAAAATGGTTCCGGCCACGGGAGCTGAG
AGCCCGCACCGTAAATCTCGGACGGGTCAATACGGAGAAGTTCCCACCGA
ACGAGATCCGGAATCAGAAGTACAACTTCATCACCTTCCTGCCGCTGGTG
CTGTTCGAGCAGTTTCGCTTCTTCCTCAACTTGTACTTCCTGCTGATGGC
GCTGTCGCAGTTCATTCCGGACATCCGGATCGGTTACCCGTACACCTACT
GGGGTCCGCTCGGCTTCGTGCTAATGGTCACCATTTGCCGAGAGGCGGTC
GACGATCTGCGTCGGCATCAGCGGGATCACGAGGTAAACTCGCAGAAGTA
CAAGAGACTGTCGTCCACCAACATCAGCGGCTACGAAATGGTTCCCAGCT
CCAAGCTGAAGGTCGGTGACGTCATAATCGTGGAAAAGAACGAGCGCGTG
CCAGCGGATCTGATCCTGCTGCGCACCAGCGATCGGAGCGGATCGGTCTT
TGTTCGTACGGACCAACTTGATGGCGAGACGGACTGGAAACCACGTCTCG
CCGTTCCGTATACTCAAAAACTCAGTCGAGATTCGGAGCTACATAGCATC
GATGCCAGTTTTTACGTGGAGAAGCCACAGAACGACATTCACAGCTTCAT
CGCCACCTTCTGCATGGCAGACGGCAGCGAAGACACCGGTCTCAGTGTGG
AGAATACCCTGTGGGCCAACACCGTCGTAGCCGCAGGAACAGCCACAGGA
ATTGTCATATATACTGGCTGCGAAACTCGCAGCGTGATGAATAACTCACA
GCCAAGGTCCAAAGTTGGACTGCTAGACATGGAGATTAACGGATTGACTA
AGGTTCTGTTCTGCGCCGTGCTTGGACTGTCGCTAGTCATGATGATGCTT
AAGGGTTTCGGCGGTCCTTGGTATAGATACATGTTCCGCTTCGTTCTTCT
CTTCTCCTACATCATTCCAATCAGTCTGCGTGTCAATTTGGACATGGGAA
AGGCGTTCTACTCATGGCAAATGCAAAACGATTCGAACATCCAGGGAACT
GTAGTGAGGTCGACCACCATACCCGAGGAATTGGGACGAATCTCTTATGT
ATTGACCGACAAGACGGGCACACTCACACAAAACGAGATGGTGTTCAAGA
AGATCCACTTGGGCATTGTATCGCACGATGCAGACACTTTCCATCACATT
GGGCAGATGATACAGAAGCTATCGGGAAACATTCTGCAACAGCAGCAGGG
TAGTTTATCGAGCTCGAGCAGCGGCGGAGACTCGACCAAGCCAATGATGT
TTGGCAACAGGATGCGTCGACCGGAGGGATGGCGGGAATGGGAGGCGGTG
CGAGCACTGGCCCTGTGCCACAATGTTACACCGGTAAGCGATGACGAGGA
CAACCGATCCGTGTCCACGGCATCGACCGTTACCGGCGGTAACAACTCGC
CAACCAAATCTGTGATAAACATCGAGGCACCTGGCAGTACGGACACAGAG
CATCAGTATCAGGCTGCGTCTCCAGACGAGATTGCACTAGTAAAGTGGAC
TGAGCAGGTGGGACTGACCCTGATTGCCAGGGATCTCAACACGATGACGT
TGCAGGTGAAGACCCCCAGCGAAGACAATGACATACTTCTGCACTATCAA
ATCTTGCAGCTTTTCCCATTCACTAGCGAGAGCAAGCGCATGGGAATTAT
AGTGCGTGAGAGCAAAACTGGTCAGATAACGTTTTATTTGAAGGGTGCCG
ACGTGGTTATGTCCAGTATTGTGCAGTACAACGACTGGCTAAGCGAGGAG
TCAGGAAACATGGCTAGAGAGGGTCTTCGCACTCTTGTTGTGGCTAAGAA
GGTTCTCACCGAGGAACAGTACTCTGACTTTGAGACGCGCTACAATGCTG
CTCGACTGAGCATCACCGATCGTGTCGCCAAAGTGGCGGCAGTCACTGAA
TCCCTCGAGCGTGAACTGGAACTGCTCTGTTTGACAGGAGTGGAGGATCG
TCTGCAGGAGAACGTGCGTCCAACGCTGGAGCTACTGCGCAATGCTGGAG
TTCGCGTTTGGATGCTAACGGGCGACAAGCTGGAGACTGCTTGCTGTATT
GCCAAGTCCTCACAGCTGATTGGTCGGAACCAGGGACTCCATGTTTTGCG
TTCCGTAAAGACGCGTACCGATGCTCACCAGGAGCTGAACAGCTTCCGGC
GTAAGCAGGGTCATGCACTGGTCATCTCAGGCGAATCCCTCGAGGTTTGC
CTGCAGTATTATAGACCAGAGTTCCTGGAGCTGGCCACGGCCTCGCCGGC
CGTCGTTTGCTGTCGCTGCTCGCCCACACAGAAAGCACAGGTGGTGGCGC
TCATACAAAAGCACACAGGCAAACGAACCTGTGCCGTGGGTGACGGTGGC
AACGATGTCAGCATGATTCAGCAGGCGGACGCTGGAGTTGGAATTGAAGG
ACGAGAGGGAAGACAAGCCTCTCTGGCCGGCGATTTTAGCATTCCGCAGT
TTTCGCACATCGCCAAGCTCCTGCTTATCCACGGTCGCAGGAGCTACAAG
CGATCGGCGGCACTATCCCAGTTCGTTATCCACCGCGGCTTGATCATAAC
CACATTGCAGGCGGTCTTTTCAGCGGTATTCTACCTCAGCTCGGTTGCTT
TGTATCAGGGCTTTCTCATGGTCGGTTACTCGACGCTGTACACTATGTTC
CCGGTGTTCTCATTAGTGCTAGATCAGGATATCACATCGGAGACGGCCGT
CACATACCCAGAGCTTTACAAGGATTTGTCAAAAGGACGCAGTCTAAGCT
ACAAGACCTTCTTTATATGGGTACTAATCAGCATATACCAAGGCGGCGTC
ATCATGTACGGAGCATTAATACTCTTTGTGGATGAGTTTATCCACATTGT
GGCGATCAGTTTCTCGGCATTAATCATGACTGAGCTCATCATGGTGGCTC
TCACCGTGCGTACTTGGCATAGGTTAATGGTGCTAGCGGAACTATTCAGT
TTAGCGCTTTATCTCATCTCATTGGCCGTGTTACATGAGTATTTCGACTG
GGAGTTTATTTGGTCGTATGATTTTCTGTGGAAGGTTTCTCTCATCACTC
TGGTCTCCTGCTTACCATTGTACATAATCAAGTTCTTGCGAAAGAAATGT
TCGCCGCCCTCTTACTTGAAGCTCTCTGCAAGCTTTCTAGACCAT
BO33331.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31729-RA | 3264 | CG31729-PA | 1..3261 | 17..3277 | 16305 | 100 | Plus |
CG31729-RC | 3231 | CG31729-PC | 64..3228 | 113..3277 | 15825 | 100 | Plus |
CG31729-RB | 3771 | CG31729-PB | 604..3768 | 113..3277 | 15825 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:05:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31729-RA | 4167 | CG31729-RA | 299..3561 | 15..3277 | 16315 | 100 | Plus |
CG31729-RD | 3999 | CG31729-RD | 381..3545 | 113..3277 | 15825 | 100 | Plus |
CG31729-RC | 3963 | CG31729-RC | 193..3357 | 113..3277 | 15825 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13299395..13300741 | 1728..3074 | 6735 | 100 | Plus |
2L | 23513712 | 2L | 13297617..13298458 | 113..954 | 4210 | 100 | Plus |
2L | 23513712 | 2L | 13298557..13299333 | 951..1727 | 3885 | 100 | Plus |
2L | 23513712 | 2L | 13300931..13301062 | 3146..3277 | 660 | 100 | Plus |
2L | 23513712 | 2L | 13296646..13296745 | 15..114 | 500 | 100 | Plus |
2L | 23513712 | 2L | 13300799..13300874 | 3071..3146 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:05:18 has no hits.
BO33331.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-09-19 11:12:04 Download gff for
BO33331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31729-RA | 300..3560 | 17..3279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:49:48 Download gff for
BO33331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31729-RA | 300..3560 | 17..3279 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:56:50 Download gff for
BO33331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31729-RA | 301..3561 | 17..3279 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:56:50 Download gff for
BO33331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13296648..13296745 | 17..114 | 100 | -> | Plus |
2L | 13297619..13298456 | 115..952 | 100 | -> | Plus |
2L | 13298559..13299333 | 953..1727 | 100 | -> | Plus |
2L | 13299395..13300739 | 1728..3072 | 100 | -> | Plus |
2L | 13300801..13300874 | 3073..3146 | 100 | -> | Plus |
2L | 13300932..13301062 | 3147..3279 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:49:48 Download gff for
BO33331.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13298559..13299333 | 953..1727 | 100 | -> | Plus |
arm_2L | 13296648..13296745 | 17..114 | 100 | -> | Plus |
arm_2L | 13297619..13298456 | 115..952 | 100 | -> | Plus |
arm_2L | 13299395..13300739 | 1728..3072 | 100 | -> | Plus |
arm_2L | 13300801..13300874 | 3073..3146 | 100 | -> | Plus |
arm_2L | 13300932..13301062 | 3147..3279 | 98 | | Plus |
BO33331.pep Sequence
Translation from 16 to 3295
> BO33331.pep
MDDATSQNSAATPMTRENIPLLNRQRNRWYLFSCWRKWFRPRELRARTVN
LGRVNTEKFPPNEIRNQKYNFITFLPLVLFEQFRFFLNLYFLLMALSQFI
PDIRIGYPYTYWGPLGFVLMVTICREAVDDLRRHQRDHEVNSQKYKRLSS
TNISGYEMVPSSKLKVGDVIIVEKNERVPADLILLRTSDRSGSVFVRTDQ
LDGETDWKPRLAVPYTQKLSRDSELHSIDASFYVEKPQNDIHSFIATFCM
ADGSEDTGLSVENTLWANTVVAAGTATGIVIYTGCETRSVMNNSQPRSKV
GLLDMEINGLTKVLFCAVLGLSLVMMMLKGFGGPWYRYMFRFVLLFSYII
PISLRVNLDMGKAFYSWQMQNDSNIQGTVVRSTTIPEELGRISYVLTDKT
GTLTQNEMVFKKIHLGIVSHDADTFHHIGQMIQKLSGNILQQQQGSLSSS
SSGGDSTKPMMFGNRMRRPEGWREWEAVRALALCHNVTPVSDDEDNRSVS
TASTVTGGNNSPTKSVINIEAPGSTDTEHQYQAASPDEIALVKWTEQVGL
TLIARDLNTMTLQVKTPSEDNDILLHYQILQLFPFTSESKRMGIIVRESK
TGQITFYLKGADVVMSSIVQYNDWLSEESGNMAREGLRTLVVAKKVLTEE
QYSDFETRYNAARLSITDRVAKVAAVTESLERELELLCLTGVEDRLQENV
RPTLELLRNAGVRVWMLTGDKLETACCIAKSSQLIGRNQGLHVLRSVKTR
TDAHQELNSFRRKQGHALVISGESLEVCLQYYRPEFLELATASPAVVCCR
CSPTQKAQVVALIQKHTGKRTCAVGDGGNDVSMIQQADAGVGIEGREGRQ
ASLAGDFSIPQFSHIAKLLLIHGRRSYKRSAALSQFVIHRGLIITTLQAV
FSAVFYLSSVALYQGFLMVGYSTLYTMFPVFSLVLDQDITSETAVTYPEL
YKDLSKGRSLSYKTFFIWVLISIYQGGVIMYGALILFVDEFIHIVAISFS
ALIMTELIMVALTVRTWHRLMVLAELFSLALYLISLAVLHEYFDWEFIWS
YDFLWKVSLITLVSCLPLYIIKFLRKKCSPPSYLKLSASFLDH
BO33331.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:45:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31729-PA | 1087 | CG31729-PA | 1..1087 | 1..1087 | 5592 | 100 | Plus |
CG31729-PC | 1076 | CG31729-PC | 21..1076 | 32..1087 | 5425 | 99.9 | Plus |
CG31729-PB | 1256 | CG31729-PB | 200..1256 | 31..1087 | 5424 | 99.9 | Plus |
CG31729-PD | 994 | CG31729-PD | 1..994 | 94..1087 | 5089 | 100 | Plus |
CG9981-PC | 1060 | CG9981-PC | 18..1043 | 52..1072 | 1075 | 28.1 | Plus |