BO33332.complete Sequence
1804 bp assembled on 2012-10-01
GenBank Submission: KX796194
> BO33332.complete
GAAGTTATCAGTCGACATGATTGTGCCAACCTTCCATGCGCTCGGCCAAG
TCTTGAGGCAGATGTTTGCGGTCCAACTCCAACAGCAGCAGCAGCGCACT
CATAATCAGCTCCATTACCTCGATTTGTCGCCCGCGCGAACCATCAACCA
ACTGTTAGTGTGTCCATGCGCATCCAATCCTGTACCTCCTGCTGCCCGTA
TTAGTCTTGTACATATAACCCTCGAACCGATCAATGCCAGCCGGACGACC
AGTTGCCTGATCGAGGAGGTAGCCGAGCCGGATTCACAGCCGGAGATTAA
GCCGGTGGCAGAAGCGCAGTCTGCCAAAGTATCCGAGGCTTGTGTCGAAA
GTATTCTCCCCGAGACAGTTGAAAAGTTAGAAACAGCAGACCAGGTCCAG
CAGGTTATACCACAGTTGGGGAAGCTTTACGTGGGCAGTAGCCAGCAGCA
GTATGCGCAGCAGTCATCGCCCATCATCCAGGAGCCAGCTACTCCTACTA
TTTACGGAAACAGCGCCGCAGCCGGAGCGCCGCAGTTCCCGCAGCCCGCC
CAAAGGCAAGAGAAGCAGCCTCCGCAGCAGCAGCCCATCTACGCTAACCA
GTATGAGCTGAATGTGGCCAAGGCGGCAGCTGCAGCATCTGTTTACTCAC
CCAGCTCCTCCACCACCAGCAACTCCAATCAACAGCAGCAGCAGCAGCGC
CGGAATGTGGCCCGTGGACTGCAGTATCGTGAATCTGGAGGACTCGAGAC
TGGACGTGCTGGCAAGCAGCCACCCAATGCGGGCATGTTGTCAATGGACA
ACTTCCGTTTGCTAAGCGTTCTTGGTCGCGGCCACTTTGGCAAGGTGATT
CTGTCCCAATTGCGAAGCAACAACCAGTACTACGCTATTAAGGCACTGAA
GAAGGGAGACATCATTGCCCGCGACGAAGTGGAGTCCCTGCTTAGCGAAA
AGCGCATCTTCGAGGTGGCCAACGCCATGCGCCATCCGTTCTTAGTTAAC
TTGTATTCGTGCTTCCAGACTGAGCAACACGTATGCTTTGTGATGGAATA
CGCTGCTGGCGGAGATTTGATGATGCACATCCACACGGACGTGTTCCTAG
AGCCGAGAGCCGTTTTCTACGCCGCTTGTGTGGTTCTGGGCCTGCAGTAC
CTGCACGAGAACAAGATCATCTACCGGGACCTGAAGCTGGACAATTTGCT
TTTGGACACGGAAGGATATGTGAAAATTGCGGACTTTGGTTTGTGCAAGG
AGGGCATGGGCTTTGGTGATCGCACGGGCACTTTCTGTGGTACGCCCGAG
TTTCTGGCACCGGAAGTGCTCACGGAAACTTCCTACACACGAGCTGTGGA
TTGGTGGGGCTTGGGTGTGTTGATCTTTGAGATGTTGGTTGGTGAGTCCC
CATTCCCTGGTGACGATGAGGAGGAAGTATTCGATTCAATTGTCAACGAT
GAGGTGCGCTATCCGCGCTTCCTATCGCTGGAGGCCATAGCCGTGATGCG
TAGGCTTTTGCGCAAGAATCCAGAGAGACGTCTGGGATCTTCGGAACGGG
ATGCGGAGGATGTTAAGAAACAGGCATTCTTCCGGTCAATTGTGTGGGAT
GACCTGCTCCTGCGAAAGGTTAAACCACCATTTGTGCCGACAATTAACCA
CTTGGAGGATGTGTCAAACTTTGACGAGGAGTTCACGTCGGAGAAGGCTC
AGCTTACGCCACCGAAGGAGCCGCGACACTTGACCGAGGAGGAGCAGTTG
CTCTTCCAGGACTTTTCATACACGGCCGAATGGTGTGCAAGCTTTCTAGA
CCAT
BO33332.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkn-RE | 1773 | CG2049-PE | 1..1770 | 17..1786 | 8850 | 100 | Plus |
| Pkn-RR | 3684 | CG2049-PR | 2089..3681 | 194..1786 | 7965 | 100 | Plus |
| Pkn-RN | 4434 | CG2049-PN | 2839..4431 | 194..1786 | 7965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkn-RE | 3617 | CG2049-RE | 91..1860 | 17..1786 | 8850 | 100 | Plus |
| Pkn-RR | 4490 | CG2049-RR | 2667..4259 | 194..1786 | 7965 | 100 | Plus |
| Pkn-RN | 5082 | CG2049-RN | 3259..4851 | 194..1786 | 7965 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9255089..9255711 | 1024..402 | 3115 | 100 | Minus |
| 2R | 25286936 | 2R | 9254651..9255024 | 1396..1023 | 1870 | 100 | Minus |
| 2R | 25286936 | 2R | 9255827..9256038 | 405..194 | 1060 | 100 | Minus |
| 2R | 25286936 | 2R | 9256110..9256287 | 194..17 | 890 | 100 | Minus |
| 2R | 25286936 | 2R | 9254275..9254416 | 1645..1504 | 710 | 100 | Minus |
| 2R | 25286936 | 2R | 9254067..9254207 | 1786..1646 | 705 | 100 | Minus |
| 2R | 25286936 | 2R | 9254481..9254590 | 1504..1395 | 550 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:29:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dana\Tom | 7060 | Dana\Tom DNTOMRETA 7060bp Derived from Z24451 (Rel. 44, Last updated, Version 6). | 6533..6600 | 220..287 | 115 | 63.2 | Plus |
BO33332.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 14:45:17 Download gff for
BO33332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkn-RE | 100..1869 | 17..1788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:22 Download gff for
BO33332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkn-RE | 91..1860 | 17..1788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:15 Download gff for
BO33332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pkn-RE | 91..1860 | 17..1788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:15 Download gff for
BO33332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9254275..9254415 | 1505..1645 | 100 | <- | Minus |
| 2R | 9254481..9254588 | 1397..1504 | 100 | <- | Minus |
| 2R | 9254065..9254207 | 1646..1788 | 98 | <- | Minus |
| 2R | 9254651..9255022 | 1025..1396 | 100 | <- | Minus |
| 2R | 9255089..9255709 | 404..1024 | 100 | <- | Minus |
| 2R | 9255829..9256038 | 194..403 | 100 | <- | Minus |
| 2R | 9256111..9256287 | 17..193 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:22 Download gff for
BO33332.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5141986..5142093 | 1397..1504 | 100 | <- | Minus |
| arm_2R | 5141570..5141712 | 1646..1788 | 98 | <- | Minus |
| arm_2R | 5141780..5141920 | 1505..1645 | 100 | <- | Minus |
| arm_2R | 5142156..5142527 | 1025..1396 | 100 | <- | Minus |
| arm_2R | 5142594..5143214 | 404..1024 | 100 | <- | Minus |
| arm_2R | 5143334..5143543 | 194..403 | 100 | <- | Minus |
| arm_2R | 5143616..5143792 | 17..193 | 100 | | Minus |
BO33332.pep Sequence
Translation from 16 to 1804
> BO33332.pep
MIVPTFHALGQVLRQMFAVQLQQQQQRTHNQLHYLDLSPARTINQLLVCP
CASNPVPPAARISLVHITLEPINASRTTSCLIEEVAEPDSQPEIKPVAEA
QSAKVSEACVESILPETVEKLETADQVQQVIPQLGKLYVGSSQQQYAQQS
SPIIQEPATPTIYGNSAAAGAPQFPQPAQRQEKQPPQQQPIYANQYELNV
AKAAAAASVYSPSSSTTSNSNQQQQQQRRNVARGLQYRESGGLETGRAGK
QPPNAGMLSMDNFRLLSVLGRGHFGKVILSQLRSNNQYYAIKALKKGDII
ARDEVESLLSEKRIFEVANAMRHPFLVNLYSCFQTEQHVCFVMEYAAGGD
LMMHIHTDVFLEPRAVFYAACVVLGLQYLHENKIIYRDLKLDNLLLDTEG
YVKIADFGLCKEGMGFGDRTGTFCGTPEFLAPEVLTETSYTRAVDWWGLG
VLIFEMLVGESPFPGDDEEEVFDSIVNDEVRYPRFLSLEAIAVMRRLLRK
NPERRLGSSERDAEDVKKQAFFRSIVWDDLLLRKVKPPFVPTINHLEDVS
NFDEEFTSEKAQLTPPKEPRHLTEEEQLLFQDFSYTAEWCASFLDH
BO33332.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pkn-PE | 590 | CG2049-PE | 1..590 | 1..590 | 3052 | 100 | Plus |
| Pkn-PR | 1227 | CG2049-PR | 697..1227 | 60..590 | 2741 | 100 | Plus |
| Pkn-PN | 1477 | CG2049-PN | 947..1477 | 60..590 | 2741 | 100 | Plus |
| Pkn-PL | 1275 | CG2049-PL | 745..1275 | 60..590 | 2741 | 100 | Plus |
| Pkn-PM | 1260 | CG2049-PM | 730..1260 | 60..590 | 2741 | 100 | Plus |
