BO33335.complete Sequence
2290 bp assembled on 2012-10-01
GenBank Submission: KX799590
> BO33335.complete
GAAGTTATCAGTCGACATGACAGCTGATTCCAGTGCACGTAATGTTTTTC
GAAAGAACGGCGTTGCCGGCTTGGGCAACAACGGTCATGGCCGGAATCTT
ATTACGACCGCCAATCCATCCGGAGGAAGTAGCGCCTCGCTGCTACAAAA
GCAGTTGTCCTTCAAAACGCCCGTTGGCTCCAAGCAGATGGGCAAATCCG
ATGAGATCGAAATGATCGACAGTGCTAACATCGAAAACTTCAATACTCGA
TATAATAAGAACAGCATTATAGGATGGATATGCTGTGCCCCGTGCATTTG
GCTGCGCACCTCGGCGGCAGTGCACAAAATGGCCATCACATCAGCCACCC
TGTTGGTGACCACATTGCTGGTAGCATCGCCCATATTATTTTTGATAAGC
ACGGCACCCTCACCTCTGCCAAGAGATTGCTACATGGACGGGGATCGGTG
CTCGCCGGCCGTTTCAGCACCGCCGGAATGCTCGGATCCCATTTGCGAGG
CGGTGGCCTCCAGCATCCAGGCCAGACTCAATTGGAACAAGGATCCGTGC
ACGGAGTTCAAGAAGTTCAGCTGTTGGCGCAACACGCCCAATAAAAATAT
AACGAACCTCATTGAAATGGGAAACTCACAGAAAAGCGTCGATTCACAAA
TGCTGTATCTATTCCAGAACAAGATTATGAACGGCAGCTTTGGTATATTG
CACAATTTGTTTGAAAGCTGCTTGCAGCAGACAACTAACTCAACTGTCAT
GCACAGGATATTTGATTCCCTAGGCGGTTATCTGCCTGTTGGTTCGGTGG
GACCATCGAGTATAGCACCCTTAATAGCCAAGATCTATGATCTCGGCCCC
AGTCCGTTGGTAGACCTATATCACGACCTTAGCTACGGAAGGCGACCGCA
CATTCTACTTATTATTAGTGGACCCAGCACTTCGTCAACTATCCTCGAGC
GAAAAATACGTTGGATGAGTCCAAAAGCCCCGCCTAGTCGTATTCGACAA
GGGGTACCGAAGTTGTTAGCCGATTTAATCGAGAATTTCCTACCTTACTT
CGTGTCATATGCTCAAAGAGTTTCCGAGAAGGATACTATTTTTGAATTTA
TAAAGGACCTAAACAAGCTGCAAGTTGAACACTCTCGTCGAGGATTCTGG
GACAGCACTGTTTTATATAATGTATCCAGTCTACAAGACTTGTACCCAGT
TTTAAATTGGACATTGCTTATACCGCAGAACTGGAGCGGACCCATCGTTG
TTAGGAATAGTGATTATCTGAAAGCCTTAGAATACTTTCTCACCAAGTAC
CCAACTAGAGTTGCACACAATTCGCTATTATTGTTAAGTGCTTTACAAAT
ATTGCCACGTGATTATCCGAGCCCCGAAGTTTGCACCCGATCCACCATGT
GGGCATTGCCCGAATTATCATCTTCCCTATATATTGCTCAACATTCATCT
GAAGACCTAAAGGACACCACAAAACGAGCTGAGATCATATTTAAGTCATT
AAAAGCGCACTTGAAGAGAGCGCCGTCTTTAAAAGGAGCTGCCCTAGTGA
AACTATCGGCTTTGAAGATCCAATCGCAGACCTGGGAGGGATTCTCAAAC
ACAACGGACTTGTTGAAGAGTCTCCAACCTCTGAATATTACGTCCGAATG
CTGGTTTCAAAACATTTTGGAGATATACAAAAAGAACAAACTGGAGCCGA
ATGATATCAGTTTGAACGGCGGCTCCCATGATGCTTGGGCATATCCCATA
GTGTCGACCATTTTTTATGATACGCTGAGCCATTCAATCGTTGTCCCATT
ATCCGTCATACTCATACCATACTTTAATGCTGTATTGCCGCCATATCTGC
ACTATGCTTCTGTTGGTGTTTCCATTGCCAAAGAGATTTTGCGTTCCATC
ACAAAATCGTTCGACGAAAAGGCAATGCGTTGTGTGCCGCATTCTGTAAA
TATATTCTCGAACTACAGCCGCATGGATATACTGATTCATTCGGGAGGAA
TGCAGATATCATACCACTCAATGCTTTCCCTAACCGGTCCCATCAAGGGA
ATGGCCAGACTACCTGGTCTGAATCTAACGCCGACGCAAATCTTCTTTTT
AGTTTCCGCCCAGGAACTGTGTGCTGAATCGAACTACTTGGGCATCGATA
CAAACGCTCCCGAATTCGATAATATATTGGGTTGGCTCGTTGCCCAGGGC
GGGAGTGCGACTGAAGTTTTCAAATGTCCATCGGGATCCATGATCAATGT
ACAGAAGACCTGCAATGTGCTTGCAAGCTTTCTAGACCAT
BO33335.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:28:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13650-RB | 2259 | CG13650-PB | 1..2256 | 17..2272 | 11280 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13650-RB | 2680 | CG13650-RB | 278..2533 | 17..2272 | 11280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:28:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25111464..25111862 | 656..258 | 1995 | 100 | Minus |
| 3R | 32079331 | 3R | 25109528..25109913 | 2175..1790 | 1930 | 100 | Minus |
| 3R | 32079331 | 3R | 25111109..25111401 | 949..657 | 1465 | 100 | Minus |
| 3R | 32079331 | 3R | 25110409..25110685 | 1478..1202 | 1385 | 100 | Minus |
| 3R | 32079331 | 3R | 25110098..25110354 | 1734..1478 | 1285 | 100 | Minus |
| 3R | 32079331 | 3R | 25111928..25112170 | 259..17 | 1215 | 100 | Minus |
| 3R | 32079331 | 3R | 25110890..25111059 | 1117..948 | 850 | 100 | Minus |
| 3R | 32079331 | 3R | 25109373..25109469 | 2272..2176 | 485 | 100 | Minus |
| 3R | 32079331 | 3R | 25110739..25110828 | 1205..1116 | 435 | 98.9 | Minus |
| 3R | 32079331 | 3R | 25109980..25110035 | 1790..1735 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:28:23 has no hits.
BO33335.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 14:45:16 Download gff for
BO33335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13650-RB | 278..2533 | 17..2274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:20 Download gff for
BO33335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13650-RB | 278..2533 | 17..2274 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:58 Download gff for
BO33335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13650-RB | 278..2533 | 17..2274 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:58 Download gff for
BO33335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25110890..25111057 | 950..1117 | 100 | <- | Minus |
| 3R | 25111109..25111401 | 657..949 | 100 | <- | Minus |
| 3R | 25109371..25109469 | 2176..2274 | 97 | <- | Minus |
| 3R | 25109528..25109912 | 1791..2175 | 100 | <- | Minus |
| 3R | 25109980..25110035 | 1735..1790 | 100 | <- | Minus |
| 3R | 25110098..25110354 | 1478..1734 | 100 | <- | Minus |
| 3R | 25110410..25110685 | 1202..1477 | 100 | <- | Minus |
| 3R | 25110743..25110826 | 1118..1201 | 100 | <- | Minus |
| 3R | 25111464..25111860 | 260..656 | 100 | <- | Minus |
| 3R | 25111928..25112170 | 17..259 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:20 Download gff for
BO33335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20935093..20935191 | 2176..2274 | 97 | <- | Minus |
| arm_3R | 20935250..20935634 | 1791..2175 | 100 | <- | Minus |
| arm_3R | 20935702..20935757 | 1735..1790 | 100 | <- | Minus |
| arm_3R | 20935820..20936076 | 1478..1734 | 100 | <- | Minus |
| arm_3R | 20936132..20936407 | 1202..1477 | 100 | <- | Minus |
| arm_3R | 20936465..20936548 | 1118..1201 | 100 | <- | Minus |
| arm_3R | 20936612..20936779 | 950..1117 | 100 | <- | Minus |
| arm_3R | 20936831..20937123 | 657..949 | 100 | <- | Minus |
| arm_3R | 20937186..20937582 | 260..656 | 100 | <- | Minus |
| arm_3R | 20937650..20937892 | 17..259 | 100 | | Minus |
BO33335.pep Sequence
Translation from 16 to 2290
> BO33335.pep
MTADSSARNVFRKNGVAGLGNNGHGRNLITTANPSGGSSASLLQKQLSFK
TPVGSKQMGKSDEIEMIDSANIENFNTRYNKNSIIGWICCAPCIWLRTSA
AVHKMAITSATLLVTTLLVASPILFLISTAPSPLPRDCYMDGDRCSPAVS
APPECSDPICEAVASSIQARLNWNKDPCTEFKKFSCWRNTPNKNITNLIE
MGNSQKSVDSQMLYLFQNKIMNGSFGILHNLFESCLQQTTNSTVMHRIFD
SLGGYLPVGSVGPSSIAPLIAKIYDLGPSPLVDLYHDLSYGRRPHILLII
SGPSTSSTILERKIRWMSPKAPPSRIRQGVPKLLADLIENFLPYFVSYAQ
RVSEKDTIFEFIKDLNKLQVEHSRRGFWDSTVLYNVSSLQDLYPVLNWTL
LIPQNWSGPIVVRNSDYLKALEYFLTKYPTRVAHNSLLLLSALQILPRDY
PSPEVCTRSTMWALPELSSSLYIAQHSSEDLKDTTKRAEIIFKSLKAHLK
RAPSLKGAALVKLSALKIQSQTWEGFSNTTDLLKSLQPLNITSECWFQNI
LEIYKKNKLEPNDISLNGGSHDAWAYPIVSTIFYDTLSHSIVVPLSVILI
PYFNAVLPPYLHYASVGVSIAKEILRSITKSFDEKAMRCVPHSVNIFSNY
SRMDILIHSGGMQISYHSMLSLTGPIKGMARLPGLNLTPTQIFFLVSAQE
LCAESNYLGIDTNAPEFDNILGWLVAQGGSATEVFKCPSGSMINVQKTCN
VLASFLDH
BO33335.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:53:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13650-PB | 752 | CG13650-PB | 1..752 | 1..752 | 3919 | 100 | Plus |
