BO33339.complete Sequence
2272 bp assembled on 2012-10-01
GenBank Submission: KX798113
> BO33339.complete
GAAGTTATCAGTCGACATGGACGTGGCCAAAATGCAAGCCACTTCCGGTC
AGCATCTGCTGCATCCGGCCGCACCGCCCGCCCACCAACACCACCTGCCC
CTCGACTACAGCCTGGGCAACTTTAAGCCAGCCATCGCGTCTGACTTTCC
CGGACCCTTCCTCACCAGCCAGCAATCCTCGTCGGCCTCCAATTCCGCCT
CCTCCTCCGCCGCCGCCACCGTTCCGCTGCAGGTGCGCGATCTCAGCGCG
CTGACGGCCATGGCCACGATACCCTCGCCCACCCAGCTGCTTCACCAGCG
CATACAGATGTCCGCGGACGCGGCCTTGGGCCACCACCAGCAGCAGCCGG
CACAGAATCCCAATCCCAATCCGAATCACCCGCAGCCACAGATGCCGCCG
GCCTCCACGTCGCCGCACGAGTACGCGCCTATGTCCGCCTTCAAAGCGGT
GCTGCCCAAGAAGCGAAACTCCGACGATGCCTCGCTAGCATTTAGCATAA
GCAGACTGGTCAAGACTGAACAACTAACGGCGATGGCGGCGGCCGTTGGC
CTTAAGCCGCCGACTCCTCTGGAGGACAACAACAACTCAATCTCGATGCT
GAGCAAAAATCAGCAGATGCACCAGCAGCACCACCAACAGTCGCATCTTG
CCCAGCGCCCCAAGCCAGCCTTTATCAGCGCCAGCGAAAAGCTGCGCCGC
CAATCGCGATCCCGCTCCAGGTCGAGATCCCGCAGTCCCTGCTCATCGCA
AATCGACATGGAGGATGCGGATTCGAACCACTCGCACCGTTCTCTGCACT
CACGCTCGAGATCGCGATCACGTTCCCGCTCCCATTCCCGCTCCCGCTCG
CACTCGAGCAGCTCATCCGTGGAACTGGAGGTGGACTCGCCGCCCGGCAG
TCCGCGCATCAGCTCGCCCAGCGGCGCCTCAGCCTCCGCCTCCGAGCTCC
TAATCACCGCCAATGGTGGCGGTCGTAGCATAGGATCCAAGAAGTCGGAT
CTCTTCTCCGTTTCCGCGCTGCTGCGGCGAGACGAACCGCCTCCACAGCG
ACGGACGCCACGCAGTCCGCCACTGGGTCATCTGACATCCAGCGGTCTGG
CCATGCCATTCAATCCGCTGGAGGCGATGCGCCAGGGTTATCCGCCCAAC
TACGATGCGGCCATGTTCCAGCGACCGCTCTTCTCGCCCGCCCTGCCCTT
CTTCGCCGCCGTCGCCTTCCACCAAGGACAGCAGCAGCAGCAGCAACAGC
AACAACAGCAATCCGGATTGGCAGCAGGCTACCATCCGGATTCGCAGGAA
AATCTCTTCCGTCTGCGCAGTCTGATGGTGCCGCTCCAATCCGCCGGACA
GAACAATTCCTCGGCAGCAGCGGCGGCGGCAGCAGCTGCGGCGGCTGCCG
TCGGCGTGGGCGTTGGCGTCGGTGTGGGCGTGCCACCCAATGGCGGTCAT
CTGGGCCTGCCCCACTCGCCACACCTGCACCACTTCCATCACATGGCCGC
CAAGTGGCCGGGCCTGCACCAATTCAGCGACCTGTACTCGTGCATGAAGT
GCGAGAAGATGTTCTCCACGCCACACGGCCTCGAGGTCCACTCCCGCCGG
ACGCACCACGGCAAGAAGCCCTACGCCTGCGAGCTCTGCAACAAGACCTT
CGGGCACGAGGTCAGCCTCAGCCAGCACAGGGCGGTGCACAACGTGGAGA
AAGTGTTCGAGTGCAAGCAGTGCGGCAAGCGCTTCAAGCGCTCCAGCACC
CTGTCCACCCACCTGCTCATCCACAGCGACACGCGGCCTTATCCCTGCAA
CTACTGCGGCAAGCGGTTCCACCAGAAGAGCGACATGAAGAAGCACACCT
ACATCCACACAGGCGAGAAACCGCACAAGTGCCAGGTGTGCGGAAAGGCC
TTCAGCCAGAGCTCCAACCTGATCACGCATTCCCGCAAGCACACCGGCTA
CAAGCCCTTCTCCTGCAAGCTCTGCCACAAGGCCTTCCAGCGGAAGGTGG
ACCTGCGCCGGCACAAGGAGACCCAGCACACGGATCTGCGTGTCCACCTG
GGCAAGGTGGACTTCATGTCGGCGGCGGCGGCAGCGGCAGCCTCTGCGGA
ACTGAGTGCAGCAGCAGCGGCGGCGGCGGCGGCGGGGGGTTCCGTTCCGG
GCGGAGGACCACCGGGCAGCCAGGGAGCCAATGCGGTTGGCTCCGCTCCA
AATGGGGCTCCACCGATGGGGGGACTCAACTGCCAGAAGGTATCGCTGCT
GGCAGCAAGCTTTCTAGACCAT
BO33339.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:29:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sens-2-RB | 2241 | CG31632-PB | 1..2238 | 17..2254 | 11190 | 100 | Plus |
sens-2-RA | 2241 | CG31632-PA | 1..2238 | 17..2254 | 11190 | 100 | Plus |
sens-RA | 1626 | CG32120-PA | 1237..1538 | 1706..2007 | 685 | 81.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:29:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sens-2-RB | 3744 | CG31632-RB | 667..2904 | 17..2254 | 11190 | 100 | Plus |
sens-2-RA | 3361 | CG31632-RA | 284..2521 | 17..2254 | 11190 | 100 | Plus |
sens-RA | 2451 | CG32120-RA | 1455..1756 | 1706..2007 | 685 | 81.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:29:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6831169..6831971 | 476..1278 | 4015 | 100 | Plus |
2L | 23513712 | 2L | 6822600..6823059 | 17..476 | 2300 | 100 | Plus |
2L | 23513712 | 2L | 6832151..6832554 | 1278..1681 | 2020 | 100 | Plus |
2L | 23513712 | 2L | 6837761..6838155 | 1860..2254 | 1975 | 100 | Plus |
2L | 23513712 | 2L | 6833003..6833188 | 1678..1863 | 930 | 100 | Plus |
3L | 28110227 | 3L | 13397312..13397456 | 1854..1710 | 395 | 84.8 | Minus |
3L | 28110227 | 3L | 13396923..13397070 | 2007..1860 | 305 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:29:15 has no hits.
BO33339.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 14:45:18 Download gff for
BO33339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sens-2-RA | 284..2521 | 17..2256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:25 Download gff for
BO33339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sens-2-RA | 284..2521 | 17..2256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:17 Download gff for
BO33339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sens-2-RA | 284..2521 | 17..2256 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:17 Download gff for
BO33339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6822600..6823059 | 17..476 | 100 | -> | Plus |
2L | 6831170..6831971 | 477..1278 | 100 | -> | Plus |
2L | 6832152..6832553 | 1279..1680 | 100 | -> | Plus |
2L | 6833006..6833187 | 1681..1862 | 100 | -> | Plus |
2L | 6837764..6838155 | 1863..2256 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:25 Download gff for
BO33339.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6822600..6823059 | 17..476 | 100 | -> | Plus |
arm_2L | 6831170..6831971 | 477..1278 | 100 | -> | Plus |
arm_2L | 6832152..6832553 | 1279..1680 | 100 | -> | Plus |
arm_2L | 6833006..6833187 | 1681..1862 | 100 | -> | Plus |
arm_2L | 6837764..6838155 | 1863..2256 | 99 | | Plus |
BO33339.pep Sequence
Translation from 16 to 2272
> BO33339.pep
MDVAKMQATSGQHLLHPAAPPAHQHHLPLDYSLGNFKPAIASDFPGPFLT
SQQSSSASNSASSSAAATVPLQVRDLSALTAMATIPSPTQLLHQRIQMSA
DAALGHHQQQPAQNPNPNPNHPQPQMPPASTSPHEYAPMSAFKAVLPKKR
NSDDASLAFSISRLVKTEQLTAMAAAVGLKPPTPLEDNNNSISMLSKNQQ
MHQQHHQQSHLAQRPKPAFISASEKLRRQSRSRSRSRSRSPCSSQIDMED
ADSNHSHRSLHSRSRSRSRSRSHSRSRSHSSSSSVELEVDSPPGSPRISS
PSGASASASELLITANGGGRSIGSKKSDLFSVSALLRRDEPPPQRRTPRS
PPLGHLTSSGLAMPFNPLEAMRQGYPPNYDAAMFQRPLFSPALPFFAAVA
FHQGQQQQQQQQQQQSGLAAGYHPDSQENLFRLRSLMVPLQSAGQNNSSA
AAAAAAAAAAAVGVGVGVGVGVPPNGGHLGLPHSPHLHHFHHMAAKWPGL
HQFSDLYSCMKCEKMFSTPHGLEVHSRRTHHGKKPYACELCNKTFGHEVS
LSQHRAVHNVEKVFECKQCGKRFKRSSTLSTHLLIHSDTRPYPCNYCGKR
FHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGYKPFSC
KLCHKAFQRKVDLRRHKETQHTDLRVHLGKVDFMSAAAAAAASAELSAAA
AAAAAAGGSVPGGGPPGSQGANAVGSAPNGAPPMGGLNCQKVSLLAASFL
DH
BO33339.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:53:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sens-2-PB | 746 | CG31632-PB | 1..746 | 1..746 | 3917 | 100 | Plus |
sens-2-PA | 746 | CG31632-PA | 1..746 | 1..746 | 3917 | 100 | Plus |
sens-PA | 541 | CG32120-PA | 5..522 | 114..673 | 559 | 32.2 | Plus |
Kr-h1-PB | 845 | CG45074-PB | 25..509 | 307..733 | 430 | 28.5 | Plus |
Kr-h1-PA | 791 | CG45074-PA | 166..455 | 441..733 | 429 | 33.2 | Plus |