Clone BO33339 Report

Search the DGRC for BO33339

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:333
Well:39
Vector:pDNR-Dual
Associated Gene/Transcriptsens-2-RA
Protein status:BO33339.pep: Imported from assembly
Sequenced Size:2272

Clone Sequence Records

BO33339.complete Sequence

2272 bp assembled on 2012-10-01

GenBank Submission: KX798113

> BO33339.complete
GAAGTTATCAGTCGACATGGACGTGGCCAAAATGCAAGCCACTTCCGGTC
AGCATCTGCTGCATCCGGCCGCACCGCCCGCCCACCAACACCACCTGCCC
CTCGACTACAGCCTGGGCAACTTTAAGCCAGCCATCGCGTCTGACTTTCC
CGGACCCTTCCTCACCAGCCAGCAATCCTCGTCGGCCTCCAATTCCGCCT
CCTCCTCCGCCGCCGCCACCGTTCCGCTGCAGGTGCGCGATCTCAGCGCG
CTGACGGCCATGGCCACGATACCCTCGCCCACCCAGCTGCTTCACCAGCG
CATACAGATGTCCGCGGACGCGGCCTTGGGCCACCACCAGCAGCAGCCGG
CACAGAATCCCAATCCCAATCCGAATCACCCGCAGCCACAGATGCCGCCG
GCCTCCACGTCGCCGCACGAGTACGCGCCTATGTCCGCCTTCAAAGCGGT
GCTGCCCAAGAAGCGAAACTCCGACGATGCCTCGCTAGCATTTAGCATAA
GCAGACTGGTCAAGACTGAACAACTAACGGCGATGGCGGCGGCCGTTGGC
CTTAAGCCGCCGACTCCTCTGGAGGACAACAACAACTCAATCTCGATGCT
GAGCAAAAATCAGCAGATGCACCAGCAGCACCACCAACAGTCGCATCTTG
CCCAGCGCCCCAAGCCAGCCTTTATCAGCGCCAGCGAAAAGCTGCGCCGC
CAATCGCGATCCCGCTCCAGGTCGAGATCCCGCAGTCCCTGCTCATCGCA
AATCGACATGGAGGATGCGGATTCGAACCACTCGCACCGTTCTCTGCACT
CACGCTCGAGATCGCGATCACGTTCCCGCTCCCATTCCCGCTCCCGCTCG
CACTCGAGCAGCTCATCCGTGGAACTGGAGGTGGACTCGCCGCCCGGCAG
TCCGCGCATCAGCTCGCCCAGCGGCGCCTCAGCCTCCGCCTCCGAGCTCC
TAATCACCGCCAATGGTGGCGGTCGTAGCATAGGATCCAAGAAGTCGGAT
CTCTTCTCCGTTTCCGCGCTGCTGCGGCGAGACGAACCGCCTCCACAGCG
ACGGACGCCACGCAGTCCGCCACTGGGTCATCTGACATCCAGCGGTCTGG
CCATGCCATTCAATCCGCTGGAGGCGATGCGCCAGGGTTATCCGCCCAAC
TACGATGCGGCCATGTTCCAGCGACCGCTCTTCTCGCCCGCCCTGCCCTT
CTTCGCCGCCGTCGCCTTCCACCAAGGACAGCAGCAGCAGCAGCAACAGC
AACAACAGCAATCCGGATTGGCAGCAGGCTACCATCCGGATTCGCAGGAA
AATCTCTTCCGTCTGCGCAGTCTGATGGTGCCGCTCCAATCCGCCGGACA
GAACAATTCCTCGGCAGCAGCGGCGGCGGCAGCAGCTGCGGCGGCTGCCG
TCGGCGTGGGCGTTGGCGTCGGTGTGGGCGTGCCACCCAATGGCGGTCAT
CTGGGCCTGCCCCACTCGCCACACCTGCACCACTTCCATCACATGGCCGC
CAAGTGGCCGGGCCTGCACCAATTCAGCGACCTGTACTCGTGCATGAAGT
GCGAGAAGATGTTCTCCACGCCACACGGCCTCGAGGTCCACTCCCGCCGG
ACGCACCACGGCAAGAAGCCCTACGCCTGCGAGCTCTGCAACAAGACCTT
CGGGCACGAGGTCAGCCTCAGCCAGCACAGGGCGGTGCACAACGTGGAGA
AAGTGTTCGAGTGCAAGCAGTGCGGCAAGCGCTTCAAGCGCTCCAGCACC
CTGTCCACCCACCTGCTCATCCACAGCGACACGCGGCCTTATCCCTGCAA
CTACTGCGGCAAGCGGTTCCACCAGAAGAGCGACATGAAGAAGCACACCT
ACATCCACACAGGCGAGAAACCGCACAAGTGCCAGGTGTGCGGAAAGGCC
TTCAGCCAGAGCTCCAACCTGATCACGCATTCCCGCAAGCACACCGGCTA
CAAGCCCTTCTCCTGCAAGCTCTGCCACAAGGCCTTCCAGCGGAAGGTGG
ACCTGCGCCGGCACAAGGAGACCCAGCACACGGATCTGCGTGTCCACCTG
GGCAAGGTGGACTTCATGTCGGCGGCGGCGGCAGCGGCAGCCTCTGCGGA
ACTGAGTGCAGCAGCAGCGGCGGCGGCGGCGGCGGGGGGTTCCGTTCCGG
GCGGAGGACCACCGGGCAGCCAGGGAGCCAATGCGGTTGGCTCCGCTCCA
AATGGGGCTCCACCGATGGGGGGACTCAACTGCCAGAAGGTATCGCTGCT
GGCAGCAAGCTTTCTAGACCAT

BO33339.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:29:17
Subject Length Description Subject Range Query Range Score Percent Strand
sens-2-RB 2241 CG31632-PB 1..2238 17..2254 11190 100 Plus
sens-2-RA 2241 CG31632-PA 1..2238 17..2254 11190 100 Plus
sens-RA 1626 CG32120-PA 1237..1538 1706..2007 685 81.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:29:18
Subject Length Description Subject Range Query Range Score Percent Strand
sens-2-RB 3744 CG31632-RB 667..2904 17..2254 11190 100 Plus
sens-2-RA 3361 CG31632-RA 284..2521 17..2254 11190 100 Plus
sens-RA 2451 CG32120-RA 1455..1756 1706..2007 685 81.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:29:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 6831169..6831971 476..1278 4015 100 Plus
2L 23513712 2L 6822600..6823059 17..476 2300 100 Plus
2L 23513712 2L 6832151..6832554 1278..1681 2020 100 Plus
2L 23513712 2L 6837761..6838155 1860..2254 1975 100 Plus
2L 23513712 2L 6833003..6833188 1678..1863 930 100 Plus
3L 28110227 3L 13397312..13397456 1854..1710 395 84.8 Minus
3L 28110227 3L 13396923..13397070 2007..1860 305 80.4 Minus
Blast to na_te.dros performed on 2014-11-28 12:29:15 has no hits.

BO33339.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 14:45:18 Download gff for BO33339.complete
Subject Subject Range Query Range Percent Splice Strand
sens-2-RA 284..2521 17..2256 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:25 Download gff for BO33339.complete
Subject Subject Range Query Range Percent Splice Strand
sens-2-RA 284..2521 17..2256 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:17 Download gff for BO33339.complete
Subject Subject Range Query Range Percent Splice Strand
sens-2-RA 284..2521 17..2256 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:17 Download gff for BO33339.complete
Subject Subject Range Query Range Percent Splice Strand
2L 6822600..6823059 17..476 100 -> Plus
2L 6831170..6831971 477..1278 100 -> Plus
2L 6832152..6832553 1279..1680 100 -> Plus
2L 6833006..6833187 1681..1862 100 -> Plus
2L 6837764..6838155 1863..2256 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:25 Download gff for BO33339.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 6822600..6823059 17..476 100 -> Plus
arm_2L 6831170..6831971 477..1278 100 -> Plus
arm_2L 6832152..6832553 1279..1680 100 -> Plus
arm_2L 6833006..6833187 1681..1862 100 -> Plus
arm_2L 6837764..6838155 1863..2256 99   Plus

BO33339.pep Sequence

Translation from 16 to 2272

> BO33339.pep
MDVAKMQATSGQHLLHPAAPPAHQHHLPLDYSLGNFKPAIASDFPGPFLT
SQQSSSASNSASSSAAATVPLQVRDLSALTAMATIPSPTQLLHQRIQMSA
DAALGHHQQQPAQNPNPNPNHPQPQMPPASTSPHEYAPMSAFKAVLPKKR
NSDDASLAFSISRLVKTEQLTAMAAAVGLKPPTPLEDNNNSISMLSKNQQ
MHQQHHQQSHLAQRPKPAFISASEKLRRQSRSRSRSRSRSPCSSQIDMED
ADSNHSHRSLHSRSRSRSRSRSHSRSRSHSSSSSVELEVDSPPGSPRISS
PSGASASASELLITANGGGRSIGSKKSDLFSVSALLRRDEPPPQRRTPRS
PPLGHLTSSGLAMPFNPLEAMRQGYPPNYDAAMFQRPLFSPALPFFAAVA
FHQGQQQQQQQQQQQSGLAAGYHPDSQENLFRLRSLMVPLQSAGQNNSSA
AAAAAAAAAAAVGVGVGVGVGVPPNGGHLGLPHSPHLHHFHHMAAKWPGL
HQFSDLYSCMKCEKMFSTPHGLEVHSRRTHHGKKPYACELCNKTFGHEVS
LSQHRAVHNVEKVFECKQCGKRFKRSSTLSTHLLIHSDTRPYPCNYCGKR
FHQKSDMKKHTYIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTGYKPFSC
KLCHKAFQRKVDLRRHKETQHTDLRVHLGKVDFMSAAAAAAASAELSAAA
AAAAAAGGSVPGGGPPGSQGANAVGSAPNGAPPMGGLNCQKVSLLAASFL
DH

BO33339.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:53:46
Subject Length Description Subject Range Query Range Score Percent Strand
sens-2-PB 746 CG31632-PB 1..746 1..746 3917 100 Plus
sens-2-PA 746 CG31632-PA 1..746 1..746 3917 100 Plus
sens-PA 541 CG32120-PA 5..522 114..673 559 32.2 Plus
Kr-h1-PB 845 CG45074-PB 25..509 307..733 430 28.5 Plus
Kr-h1-PA 791 CG45074-PA 166..455 441..733 429 33.2 Plus