Clone BO33341 Report

Search the DGRC for BO33341

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:333
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCdsA-RA
Protein status:BO33341.pep: Imported from assembly
Sequenced Size:1375

Clone Sequence Records

BO33341.complete Sequence

1375 bp assembled on 2012-08-22

GenBank Submission: KX795849

> BO33341.complete
GAAGTTATCAGTCGACATGGCCGAAGTGCGACGCAGGAAGGGCGAGGATG
AGCCACTGGAGGACACGGCCATCTCCGGATCTGACGCAGCCAATAAGCGC
AACTCCGCCGCCGACTCCTCGGACCATGTGGACTCCGAGGAAGAGAAGAT
TCCCGAGGAGAAGTTCGTCGACGAACTGGCCAAGAATCTGCCGCAGGGAA
CCGACAAAACGCCCGAGATATTGGACTCGGCCCTCAAGGATCTGCCGGAT
AGATGGAAGAACTGGGTGATTCGCGGCATCTTCACATGGATTATGATCTG
CGGCTTCGCATTGATCATCTATGGTGGACCGCTGGCCTTGATGATCACGA
CGTTACTGGTGCAGGTGAAGTGCTTCCAGGAGATCATCTCGATTGGCTAC
CAGGTTTATCGAATTCATGGCTTGCCCTGGTTCCGAAGCCTTTCCTGGTA
TTTCCTGCTTACCTCAAATTACTTCTTTTACGGAGAGAATCTGGTAGACT
ACTTTGGCGTTGTAATTAATCGGGTGGAATATCTGAAGTTCCTGGTGACC
TATCACCGGTTCCTTTCCTTCGCCCTGTACATCATCGGGTTCGTTTGGTT
CGTGCTCTCACTGGTGAAGAAGTATTACATCAAACAATTCAGCCTGTTTG
CCTGGACCCATGTATCCCTGCTGATTGTCGTCACCCAGAGTTACCTCATC
ATACAGAATATATTTGAGGGGCTCATTTGGTTCATCGTACCTGTTTCGAT
GATAGTGTGCAATGATGTCATGGCGTACGTGTTCGGTTTCTTCTTTGGGC
GCACTCCCCTCATCAAGCTCAGCCCCAAGAAGACCTGGGAGGGCTTCATC
GGGGGTGGCTTCGCCACCGTCCTCTTTGGCATTCTGTTCTCGTATGTGCT
GTGCAACTACCAGTACTTTATCTGTCCCATCCAGTACTCGGAGGAACAGG
GACGCATGACAATGTCCTGTGTGCCAAGCTATTTGTTCACGCCCCAGGAA
TACAGCCTTAAATTGTTTGGCATTGGCAAGACTCTAAATCTTTACCCCTT
TATCTGGCACTCGATCTCCCTGAGCCTGTTTAGTTCCATTATTGGACCCT
TTGGTGGCTTCTTTGCCTCTGGATTTAAGAGAGCTTTCAAAATTAAGGAC
TTTGGCGACATGATACCCGGACATGGCGGCATTATGGATCGTTTCGATTG
TCAGTTTCTTATGGCGACCTTCGTTAACGTTTATATATCCAGCTTCATCA
GAACTCCGTCGCCGGCTAAGCTGCTGACACAGATTTACAACCTTAAGCCA
GATCAACAATACCAAATTTATCAGTCCCTCAAGGACAACTTGGGCGACAT
GTTAACCGCAAGCTTTCTAGACCAT

BO33341.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:26:53
Subject Length Description Subject Range Query Range Score Percent Strand
CdsA-RB 1344 CG7962-PB 1..1341 17..1357 6705 100 Plus
CdsA-RA 1344 CG7962-PA 1..1341 17..1357 6705 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:26:54
Subject Length Description Subject Range Query Range Score Percent Strand
CdsA-RB 2609 CG7962-RB 424..1764 17..1357 6705 100 Plus
CdsA-RA 2391 CG7962-RA 206..1546 17..1357 6705 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:26:51
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 8129851..8130340 526..1015 2450 100 Plus
3L 28110227 3L 8130619..8130830 1146..1357 1060 100 Plus
3L 28110227 3L 8129613..8129791 349..527 895 100 Plus
3L 28110227 3L 8130424..8130557 1015..1148 670 100 Plus
3L 28110227 3L 8129080..8129208 124..252 630 99.2 Plus
3L 28110227 3L 8128259..8128371 17..129 565 100 Plus
3L 28110227 3L 8129450..8129548 251..349 495 100 Plus
Blast to na_te.dros performed on 2014-11-28 12:26:52 has no hits.

BO33341.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:30 Download gff for BO33341.complete
Subject Subject Range Query Range Percent Splice Strand
CdsA-RA 208..1548 17..1359 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:13 Download gff for BO33341.complete
Subject Subject Range Query Range Percent Splice Strand
CdsA-RA 206..1546 17..1359 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:23 Download gff for BO33341.complete
Subject Subject Range Query Range Percent Splice Strand
CdsA-RA 206..1546 17..1359 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:23 Download gff for BO33341.complete
Subject Subject Range Query Range Percent Splice Strand
3L 8130621..8130830 1148..1359 99   Plus
3L 8128259..8128369 17..127 100 -> Plus
3L 8129084..8129208 128..252 100 -> Plus
3L 8129452..8129548 253..349 100 -> Plus
3L 8129614..8129790 350..526 100 -> Plus
3L 8129852..8130340 527..1015 100 -> Plus
3L 8130425..8130556 1016..1147 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:13 Download gff for BO33341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 8123721..8123930 1148..1359 99   Plus
arm_3L 8121359..8121469 17..127 100 -> Plus
arm_3L 8122184..8122308 128..252 100 -> Plus
arm_3L 8122552..8122648 253..349 100 -> Plus
arm_3L 8122714..8122890 350..526 100 -> Plus
arm_3L 8122952..8123440 527..1015 100 -> Plus
arm_3L 8123525..8123656 1016..1147 100 -> Plus

BO33341.pep Sequence

Translation from 16 to 1375

> BO33341.pep
MAEVRRRKGEDEPLEDTAISGSDAANKRNSAADSSDHVDSEEEKIPEEKF
VDELAKNLPQGTDKTPEILDSALKDLPDRWKNWVIRGIFTWIMICGFALI
IYGGPLALMITTLLVQVKCFQEIISIGYQVYRIHGLPWFRSLSWYFLLTS
NYFFYGENLVDYFGVVINRVEYLKFLVTYHRFLSFALYIIGFVWFVLSLV
KKYYIKQFSLFAWTHVSLLIVVTQSYLIIQNIFEGLIWFIVPVSMIVCND
VMAYVFGFFFGRTPLIKLSPKKTWEGFIGGGFATVLFGILFSYVLCNYQY
FICPIQYSEEQGRMTMSCVPSYLFTPQEYSLKLFGIGKTLNLYPFIWHSI
SLSLFSSIIGPFGGFFASGFKRAFKIKDFGDMIPGHGGIMDRFDCQFLMA
TFVNVYISSFIRTPSPAKLLTQIYNLKPDQQYQIYQSLKDNLGDMLTASF
LDH

BO33341.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:14
Subject Length Description Subject Range Query Range Score Percent Strand
CdsA-PB 447 CG7962-PB 1..447 1..447 2369 100 Plus
CdsA-PA 447 CG7962-PA 1..447 1..447 2369 100 Plus