BO33341.complete Sequence
1375 bp assembled on 2012-08-22
GenBank Submission: KX795849
> BO33341.complete
GAAGTTATCAGTCGACATGGCCGAAGTGCGACGCAGGAAGGGCGAGGATG
AGCCACTGGAGGACACGGCCATCTCCGGATCTGACGCAGCCAATAAGCGC
AACTCCGCCGCCGACTCCTCGGACCATGTGGACTCCGAGGAAGAGAAGAT
TCCCGAGGAGAAGTTCGTCGACGAACTGGCCAAGAATCTGCCGCAGGGAA
CCGACAAAACGCCCGAGATATTGGACTCGGCCCTCAAGGATCTGCCGGAT
AGATGGAAGAACTGGGTGATTCGCGGCATCTTCACATGGATTATGATCTG
CGGCTTCGCATTGATCATCTATGGTGGACCGCTGGCCTTGATGATCACGA
CGTTACTGGTGCAGGTGAAGTGCTTCCAGGAGATCATCTCGATTGGCTAC
CAGGTTTATCGAATTCATGGCTTGCCCTGGTTCCGAAGCCTTTCCTGGTA
TTTCCTGCTTACCTCAAATTACTTCTTTTACGGAGAGAATCTGGTAGACT
ACTTTGGCGTTGTAATTAATCGGGTGGAATATCTGAAGTTCCTGGTGACC
TATCACCGGTTCCTTTCCTTCGCCCTGTACATCATCGGGTTCGTTTGGTT
CGTGCTCTCACTGGTGAAGAAGTATTACATCAAACAATTCAGCCTGTTTG
CCTGGACCCATGTATCCCTGCTGATTGTCGTCACCCAGAGTTACCTCATC
ATACAGAATATATTTGAGGGGCTCATTTGGTTCATCGTACCTGTTTCGAT
GATAGTGTGCAATGATGTCATGGCGTACGTGTTCGGTTTCTTCTTTGGGC
GCACTCCCCTCATCAAGCTCAGCCCCAAGAAGACCTGGGAGGGCTTCATC
GGGGGTGGCTTCGCCACCGTCCTCTTTGGCATTCTGTTCTCGTATGTGCT
GTGCAACTACCAGTACTTTATCTGTCCCATCCAGTACTCGGAGGAACAGG
GACGCATGACAATGTCCTGTGTGCCAAGCTATTTGTTCACGCCCCAGGAA
TACAGCCTTAAATTGTTTGGCATTGGCAAGACTCTAAATCTTTACCCCTT
TATCTGGCACTCGATCTCCCTGAGCCTGTTTAGTTCCATTATTGGACCCT
TTGGTGGCTTCTTTGCCTCTGGATTTAAGAGAGCTTTCAAAATTAAGGAC
TTTGGCGACATGATACCCGGACATGGCGGCATTATGGATCGTTTCGATTG
TCAGTTTCTTATGGCGACCTTCGTTAACGTTTATATATCCAGCTTCATCA
GAACTCCGTCGCCGGCTAAGCTGCTGACACAGATTTACAACCTTAAGCCA
GATCAACAATACCAAATTTATCAGTCCCTCAAGGACAACTTGGGCGACAT
GTTAACCGCAAGCTTTCTAGACCAT
BO33341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:26:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CdsA-RB | 1344 | CG7962-PB | 1..1341 | 17..1357 | 6705 | 100 | Plus |
CdsA-RA | 1344 | CG7962-PA | 1..1341 | 17..1357 | 6705 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:26:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CdsA-RB | 2609 | CG7962-RB | 424..1764 | 17..1357 | 6705 | 100 | Plus |
CdsA-RA | 2391 | CG7962-RA | 206..1546 | 17..1357 | 6705 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:26:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 8129851..8130340 | 526..1015 | 2450 | 100 | Plus |
3L | 28110227 | 3L | 8130619..8130830 | 1146..1357 | 1060 | 100 | Plus |
3L | 28110227 | 3L | 8129613..8129791 | 349..527 | 895 | 100 | Plus |
3L | 28110227 | 3L | 8130424..8130557 | 1015..1148 | 670 | 100 | Plus |
3L | 28110227 | 3L | 8129080..8129208 | 124..252 | 630 | 99.2 | Plus |
3L | 28110227 | 3L | 8128259..8128371 | 17..129 | 565 | 100 | Plus |
3L | 28110227 | 3L | 8129450..8129548 | 251..349 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:26:52 has no hits.
BO33341.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:30 Download gff for
BO33341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CdsA-RA | 208..1548 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:13 Download gff for
BO33341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CdsA-RA | 206..1546 | 17..1359 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:23 Download gff for
BO33341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CdsA-RA | 206..1546 | 17..1359 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:23 Download gff for
BO33341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 8130621..8130830 | 1148..1359 | 99 | | Plus |
3L | 8128259..8128369 | 17..127 | 100 | -> | Plus |
3L | 8129084..8129208 | 128..252 | 100 | -> | Plus |
3L | 8129452..8129548 | 253..349 | 100 | -> | Plus |
3L | 8129614..8129790 | 350..526 | 100 | -> | Plus |
3L | 8129852..8130340 | 527..1015 | 100 | -> | Plus |
3L | 8130425..8130556 | 1016..1147 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:13 Download gff for
BO33341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 8123721..8123930 | 1148..1359 | 99 | | Plus |
arm_3L | 8121359..8121469 | 17..127 | 100 | -> | Plus |
arm_3L | 8122184..8122308 | 128..252 | 100 | -> | Plus |
arm_3L | 8122552..8122648 | 253..349 | 100 | -> | Plus |
arm_3L | 8122714..8122890 | 350..526 | 100 | -> | Plus |
arm_3L | 8122952..8123440 | 527..1015 | 100 | -> | Plus |
arm_3L | 8123525..8123656 | 1016..1147 | 100 | -> | Plus |
BO33341.pep Sequence
Translation from 16 to 1375
> BO33341.pep
MAEVRRRKGEDEPLEDTAISGSDAANKRNSAADSSDHVDSEEEKIPEEKF
VDELAKNLPQGTDKTPEILDSALKDLPDRWKNWVIRGIFTWIMICGFALI
IYGGPLALMITTLLVQVKCFQEIISIGYQVYRIHGLPWFRSLSWYFLLTS
NYFFYGENLVDYFGVVINRVEYLKFLVTYHRFLSFALYIIGFVWFVLSLV
KKYYIKQFSLFAWTHVSLLIVVTQSYLIIQNIFEGLIWFIVPVSMIVCND
VMAYVFGFFFGRTPLIKLSPKKTWEGFIGGGFATVLFGILFSYVLCNYQY
FICPIQYSEEQGRMTMSCVPSYLFTPQEYSLKLFGIGKTLNLYPFIWHSI
SLSLFSSIIGPFGGFFASGFKRAFKIKDFGDMIPGHGGIMDRFDCQFLMA
TFVNVYISSFIRTPSPAKLLTQIYNLKPDQQYQIYQSLKDNLGDMLTASF
LDH
BO33341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CdsA-PB | 447 | CG7962-PB | 1..447 | 1..447 | 2369 | 100 | Plus |
CdsA-PA | 447 | CG7962-PA | 1..447 | 1..447 | 2369 | 100 | Plus |