BO33342.complete Sequence
2272 bp assembled on 2012-10-01
GenBank Submission: KX796297
> BO33342.complete
GAAGTTATCAGTCGACATGAATCTGGAGGACATTTCGATGATTATGAAGC
TGTTCGATAGCAACATGCACAAGCTACAGGGGAATCTACGTTCCTATCAA
ACCGAAATGCATCAAATTCACAAGGAGCTCACAGAAAAATTGTCGCATGC
AGATCTGCTGTACAGGAGTCTCATTCCGCTGCACGATCACTTGGTGGCCA
GTCTGAGCGAAGTTAATGCACACGTAATGAAACTGAATGTGCAACTACAC
ATCAACCGCCAGTCTGTCAGATTGGGAGACTACGAATATTACGAGAAATC
CATCGACAATCCATATTCGTCGATTCGCTCAGGTTTACAAGCGATCGAAA
AACCGGGTTGTGCTGAAGCTATATGTCAGTCCTCGAAGCCGGCCTTCGTG
GAATGTCTGCCCTCCTCCACTTCGGAGGAAGTGCCCGTCGTGGCTGTGCA
GGAAGCCTCTTCGACAAACCAGCTCGACGCAATATCAGTGGTCAATGAAA
ACCTCTCAGAAGAGAGAGACGCTACTCCGCAGCCTTTAGCAGTTTCCAAG
AACATGGAGGAGACTATGCCCTCGAATCCTTTCCACGAACAGCTTGAGGG
ATCTCTAGAAGAGATCCCAGTGGGCTCCAAGATTGTCGTGGAAACTGAAA
AGGCCAACAATCCAGTACGTTCCGAAGCTTCCGCTCCAGCAACTTCTGAC
AATCAGTCCCTTCTGGCTGCAAAACAGGGAACTCAAACAATTGGCACAGG
TATCTGCAACAAGATCTCCAAGAGCACCATCAACATGCCCAACAACTGGC
AGCTTGAGAATCCTACTGAGGTAACTGCTGCATCGATCGAAAAGGTTAAC
AAGCTCCCAAAAAGTCCCAGAAACCGATTCCTATTGCCTCCCAAGGGAGG
CACTGAGACGACCAGACGTGATATCTACAATCAAATCTTAAAGGACATGG
CTGCATTTCCAGAGAATACTATAGTTACTGCCGTTTTAGCGAGCGTGGAC
GTAACGGATAATTGCGCCTATGTGGCTAAATGGGATGAAAGTTCTGATAG
GATTAAGAAGGTGCTCCAGCGACAACTGCCATTGCAGGAGTTGGACCAGT
TGCCCGACTACGGCGACATTTTTGCAGTTCTCGACAGTATTAACAACATC
ATTACTCGGATCACCATCAACTCAAGTTCTGCGGGCGGAGGATATGATGC
GTATCTTATCGACTTTGGCGAGCATATTCATTTTGACGGCAACGAAACAA
TATTTAAACTACCGGACGACATCAAACGGTTGCCGGCACAGGCCATTAGA
TGCGATTTAATCAACTGTGATATCGCCAATATGCATTGCTTTGTTAATAC
GTATATTAAGATTCGAGTGCACGAAAACAATAATTCTACACTAGTGGCCG
AACCGGTCATTGATAGGTTAAGCAGACCTACAAAAACGAACACCACTAAA
TATCCAGCTGGAATAACCGAGGATGACATGGCCATGCTGAATGAAATCGA
TGAGAGCACCAGTGATCCTCTGAAAGCAGTTCTTGGCTTTCGTCCCAAGG
ACGAGCAACGCATTTGCCGGCACTACGATCCCAAGCTGAATGGCTGTTTT
AAGGGTAACAATTGTCGTTTTGCTCATGAGCCCTTTGCTCCGAATGGCGC
CACCAAAGATGTGGAGCTAGCTAGAGCTCTTCCTGAGACAATCTTTGATA
CAACAGTGCATTTTGAAATCGGCAGCATTGTCGGCATCCTGATCACCTTT
ATTAATGGCCCCACCGAGGTTTATGGCCAGTTTTTGGACGGATCTCCGCC
GTTGGTGTGGGACAAAAAGGATGTGCCAGAGAACAAACGGACCTTCAAGT
CGAAACCGCGTCTTCTTGACATTGTACTTGCTCTCTACAGTGATGGTTGC
TTCTATCGCGCCCAGATAATCGATGAATTCCCCAGTGAGTACATGATCTT
CTATGTGGATTACGGCAACACGGAGTTCGTGCCCCTAAGCTGCTTGGCTC
CATGTGAAAACGTGGACAGCTTTAAGCCCCACCGCGTCTTTAGTTTTCAC
ATTGAGGGAATTGTAAGGTCAAAAAATCTGACACACCAAAAGACAATCGA
ATGCATCGAGTATCTCAAGAGTAAGCTGCTAAACACGGAGATGAATGTAC
ATCTGGTACAGCGCCTACCGGATGGCTTCCTAATTCGCTTCCTGGACGAT
TGGAAATATATACCTGAACAGCTATTGCAACGCAACTACGCTCAGGTTAG
CCAAGCAAGCTTTCTAGACCAT
BO33342.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:29:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| krimp-RA | 2241 | CG15707-PA | 1..2238 | 17..2254 | 11190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:29:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| krimp-RA | 2549 | CG15707-RA | 78..2315 | 17..2254 | 11190 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:29:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16239054..16240645 | 1608..17 | 7960 | 100 | Minus |
| 2R | 25286936 | 2R | 16238337..16238987 | 2254..1604 | 3255 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:29:21 has no hits.
BO33342.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 14:45:19 Download gff for
BO33342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krimp-RA | 73..2310 | 17..2256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:28 Download gff for
BO33342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krimp-RA | 78..2315 | 17..2256 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:19 Download gff for
BO33342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| krimp-RA | 78..2315 | 17..2256 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:19 Download gff for
BO33342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16238335..16238986 | 1605..2256 | 99 | <- | Minus |
| 2R | 16239058..16240645 | 17..1604 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:28 Download gff for
BO33342.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12125840..12126491 | 1605..2256 | 99 | <- | Minus |
| arm_2R | 12126563..12128150 | 17..1604 | 100 | | Minus |
BO33342.pep Sequence
Translation from 16 to 2272
> BO33342.pep
MNLEDISMIMKLFDSNMHKLQGNLRSYQTEMHQIHKELTEKLSHADLLYR
SLIPLHDHLVASLSEVNAHVMKLNVQLHINRQSVRLGDYEYYEKSIDNPY
SSIRSGLQAIEKPGCAEAICQSSKPAFVECLPSSTSEEVPVVAVQEASST
NQLDAISVVNENLSEERDATPQPLAVSKNMEETMPSNPFHEQLEGSLEEI
PVGSKIVVETEKANNPVRSEASAPATSDNQSLLAAKQGTQTIGTGICNKI
SKSTINMPNNWQLENPTEVTAASIEKVNKLPKSPRNRFLLPPKGGTETTR
RDIYNQILKDMAAFPENTIVTAVLASVDVTDNCAYVAKWDESSDRIKKVL
QRQLPLQELDQLPDYGDIFAVLDSINNIITRITINSSSAGGGYDAYLIDF
GEHIHFDGNETIFKLPDDIKRLPAQAIRCDLINCDIANMHCFVNTYIKIR
VHENNNSTLVAEPVIDRLSRPTKTNTTKYPAGITEDDMAMLNEIDESTSD
PLKAVLGFRPKDEQRICRHYDPKLNGCFKGNNCRFAHEPFAPNGATKDVE
LARALPETIFDTTVHFEIGSIVGILITFINGPTEVYGQFLDGSPPLVWDK
KDVPENKRTFKSKPRLLDIVLALYSDGCFYRAQIIDEFPSEYMIFYVDYG
NTEFVPLSCLAPCENVDSFKPHRVFSFHIEGIVRSKNLTHQKTIECIEYL
KSKLLNTEMNVHLVQRLPDGFLIRFLDDWKYIPEQLLQRNYAQVSQASFL
DH
BO33342.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| krimp-PA | 746 | CG15707-PA | 1..746 | 1..746 | 3893 | 100 | Plus |
| CG15042-PA | 436 | CG15042-PA | 31..418 | 273..726 | 427 | 29.1 | Plus |
