BO33343.complete Sequence
1816 bp assembled on 2012-10-02
GenBank Submission: KX797124
> BO33343.complete
GAAGTTATCAGTCGACATGGATGAGCACGATATATTTAAATTGATTACGG
CGGGCGTTCGCTTCACCAAGAAGTCAAAGAAGGAACCTTCATCAAAACAA
CAACTGCAGCCACTGCCGGAGGTTTCTAAACATGAGGAGCCGGTGAAAAG
CGAAGAGTCAGATAAAGATGATGAAGATATCACAGAGTTCCGTCTCTTGG
ACGGGGATTCCAGCAATCAACCGAAACGCAAGAAGCCGAAGAAAGAGAAG
ACACTATCCCCCAAGGAATTAGAGATTCAAAAGGCAGCCGAAGAGGCAAA
CGAGACGCGGAAGCAGTATGGCATTAGGGTGTTGGGCAAGAATGTTCCTC
CACCGGTGGACAGTTTCGGAACATTGACCAGGGACTTTAAGATGCTGCCT
CGCCTGCAGCAGAACCTACTGTCTCGCAACTTTGACCACCCCACGCCGAT
CCAGATGCAGGCCCTGCCCGTACTCCTCCAGCGACGGGCGCTAATGGCCT
GTGCACCCACTGGATCCGGCAAAACGCTGGCCTTCCTCACACCCATCATA
AATGGCCTGAGGGCGCACAAGACAACTGGACTGAGAGCTCTGGTCCTTGC
TCCCACTCGCGAGTTGGCCCAGCAAATCTACCGCGAGTGTGCGGAACTCA
CCCGTGAAACGGGTTTGCGCACCCACTTCATAAGCAAGGTGAGCGAGGCC
AAGCAGAAACATGGTGCGGAGTGCAAGCAACGGTACGACATCCTGGTCTC
CACGCCAAACCGCGTGAGGTTCCTCCTGCAGCAGGAGCCACCACTGCTGG
ATTTGTCCCACGTCGAGTGGTTCGTGCTGGACGAAGCAGATCGCCTGATG
GAGGAAGGGCAAAACAACTTCAAAGAGCAGTTAGACGACATATATGCCGC
GTGCTCAAATCCAACCAAGTGCGTGGCCTTCTTTAGTGCGACCTACACTG
TGCCAGTGGCTAAATGGGCTCTACGTCACCTCAAAAACCTAGTGCGCATA
ACCATTGGAGTGCAAAATAGCGCCACGGAAACGGTTCAACAGGAGCTGCT
GTTCGTCGGATCCGAGGGCGGTAAGCTGGTGGCCATACGAGACCTTGTGC
GCCAGGGTCTCCAGCCGCCGGTGCTTGTTTTCGTTCAAAGCAAGGAACGT
GCCAAGCAGCTGTTCGAGGAGCTGCTCTACGACGGCATCAACGTGGACGT
GATCCATGCCGAAAGGAGTCAACATCAGCGCGACAACTGCGTGAAAGCTT
TCCGAGAGGGCAGCATTTGGGTGCTCATCTGTACGGAGCTCATGGGCCGC
GGCATTGACTTCAAGGGTGTCAATCTGGTGATCAACTACGACTTTCCGCC
CACTACCATTTCGTACATTCATCGGATCGGCAGAACGGGACGTGCTGGAC
GACCGGGACGCGCAATTACGTTTTTCACACAAGAGGACACGTCCAATTTG
AGAGGCATCGCGCTTATAATAAAAAACTCTGGGGGAACCGTTCCGGAATA
TATGTTGCAAATGAAAAAGGTTCGCAAATCGGAGGCCAAGATGCGAGCCA
AGAAACCGTTGGATCGCGAGGACATTTCGACCAAGATACGACCGGAGACG
AAAGGCGACGAGAAGCACAAATCCACCAAATTGAAAAAAGTTGAAAGAAC
CGAAAAAATCTTAAAAAATCGAAAGGGTTATGAAAAGGACTTAAATTCAA
AGCAGAAGAAGCTAGGCAATATTAAAACAGAACTTAAGCCAGCCGGCAAA
AGGAAAGGAAATGTAGAGAAAAAAACAAAAAATAAAAATAATCAAACTGC
AAGCTTTCTAGACCAT
BO33343.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:33:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5589-RA | 1785 | CG5589-PA | 1..1782 | 17..1798 | 8910 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:33:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5589-RA | 2112 | CG5589-RA | 52..1833 | 17..1798 | 8910 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:33:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17803173..17804550 | 1455..78 | 6890 | 100 | Minus |
| 3L | 28110227 | 3L | 17802769..17803112 | 1798..1455 | 1720 | 100 | Minus |
| 3L | 28110227 | 3L | 17804602..17804664 | 79..17 | 315 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:33:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| copia | 5143 | copia DMCOPIA 5143bp Derived from X02599 (g7740) (Rel. 49, Last updated, Version 4). | 1145..1230 | 1714..1802 | 113 | 64.8 | Plus |
BO33343.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-02 17:29:30 Download gff for
BO33343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5589-RA | 50..1831 | 17..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:07 Download gff for
BO33343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5589-RA | 52..1833 | 17..1800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:41 Download gff for
BO33343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5589-RA | 52..1833 | 17..1800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:41 Download gff for
BO33343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17802766..17803111 | 1456..1800 | 99 | <- | Minus |
| 3L | 17803173..17804548 | 80..1455 | 100 | <- | Minus |
| 3L | 17804602..17804664 | 17..79 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:07 Download gff for
BO33343.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17795866..17796211 | 1456..1800 | 99 | <- | Minus |
| arm_3L | 17796273..17797648 | 80..1455 | 100 | <- | Minus |
| arm_3L | 17797702..17797764 | 17..79 | 100 | | Minus |
BO33343.pep Sequence
Translation from 16 to 1816
> BO33343.pep
MDEHDIFKLITAGVRFTKKSKKEPSSKQQLQPLPEVSKHEEPVKSEESDK
DDEDITEFRLLDGDSSNQPKRKKPKKEKTLSPKELEIQKAAEEANETRKQ
YGIRVLGKNVPPPVDSFGTLTRDFKMLPRLQQNLLSRNFDHPTPIQMQAL
PVLLQRRALMACAPTGSGKTLAFLTPIINGLRAHKTTGLRALVLAPTREL
AQQIYRECAELTRETGLRTHFISKVSEAKQKHGAECKQRYDILVSTPNRV
RFLLQQEPPLLDLSHVEWFVLDEADRLMEEGQNNFKEQLDDIYAACSNPT
KCVAFFSATYTVPVAKWALRHLKNLVRITIGVQNSATETVQQELLFVGSE
GGKLVAIRDLVRQGLQPPVLVFVQSKERAKQLFEELLYDGINVDVIHAER
SQHQRDNCVKAFREGSIWVLICTELMGRGIDFKGVNLVINYDFPPTTISY
IHRIGRTGRAGRPGRAITFFTQEDTSNLRGIALIIKNSGGTVPEYMLQMK
KVRKSEAKMRAKKPLDREDISTKIRPETKGDEKHKSTKLKKVERTEKILK
NRKGYEKDLNSKQKKLGNIKTELKPAGKRKGNVEKKTKNKNNQTASFLDH
BO33343.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:55:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5589-PA | 594 | CG5589-PA | 1..594 | 1..594 | 3052 | 100 | Plus |
| CG7878-PA | 703 | CG7878-PA | 194..674 | 45..511 | 522 | 30.1 | Plus |
| CG10333-PA | 822 | CG10333-PA | 325..776 | 54..476 | 507 | 30.6 | Plus |
| bel-PA | 798 | CG9748-PA | 283..704 | 103..511 | 502 | 30.6 | Plus |
| bel-PB | 801 | CG9748-PB | 283..704 | 103..511 | 502 | 30.6 | Plus |
