BO33344.complete Sequence
1774 bp assembled on 2012-10-15
GenBank Submission: KX799432
> BO33344.complete
GAAGTTATCAGTCGACATGGCATCCGAACTGGATCAATTCGCCGACCTGG
AACTCTCAAAGGAGGATCGTGAACAGATCTTCGATCCGCCACTGGATCGA
CAGCAGTTGGAAGGTGCTGGCACCTCAAGAGCTGCTGTTGGTCTGAACGG
TGTCGAGTTCGAGGGCAGCAAGCTGCATGCCGAGCAGCTGGACAAGAACC
AGCGGCGTAGCCAGCGTAACCAGCGCAATCCGTATCCGGGTATGCCCGGT
CCCGGACGCCAGGCGGACTTTCCGCTGCGCATTCTTGTGCAGAGCGAAAT
GGTGGGCGCCATCATTGGTCGACAGGGCAGCACCATCAGGACGATCACAC
AACAGAGCCGTGCTCGCGTCGACGTCCATCGTAAGGAGAATGTTGGATCG
CTGGAGAAATCGATTACGATCTATGGCAATCCGGAGAACTGCACCAACGC
CTGTAAGCGCATCCTGGAAGTTATGCAGCAGGAGGCCATCTCTACGAATA
AGGGTGAACTCTCCCCGGAATGCAGTGAAATTTGCCTCAAAATACTCGCC
CACAACAATTTGATTGGACGAATCATTGGCAAGTCGGGCAATACCATTAA
ACGGATCATGCAGGACACCGATACGAAGATCACTGTCAGCTCTATCAACG
ACATCAACAGCTTCAATTTGGAGCGAATCATTACGGTCAAGGGATTAATT
GAGAACATGTCGCGTGCTGAGAACCAAATTAGCACCAAGCTGCGCCAGAG
CTACGAGAACGATCTGCAGGCGATGGCGCCGCAGAGCCTCATGTTCCCCG
GTCTCCATCCGATGGCAATGATGTCGACACCGGGCAACGGCATGGTCTTC
AATACGAGCATGCCGTTCCCCTCGTGTCAAAGCTTTGCCATGTCCAAGAC
TCCGGCTAGTGTGGTGCCACCGGTCTTCCCCAATGACCTACAGGAAACCA
CCTATCTCTACATACCCAACAACGCTGTCGGCGCCATTATCGGCACCAGG
GGCTCGCATATCCGAAGCATAATGCGCTTCTCGAACGCATCCCTTAAAAT
AGCCCCCCTCGACGCCGACAAGCCGCTGGACCAACAAACGGAGCGCAAGG
TGACGATTGTTGGCACACCGGAGGGTCAGTGGAAGGCGCAGTACATGATC
TTCGAGAAGATGCGCGAAGAAGGCTTCATGTGTGGCACGGACGATGTGCG
CCTCACGGTTGAGTTGCTTGTGGCCAGCTCTCAGGTGGGCCGTATCATTG
GCAAGGGTGGCCAAAATGTGCGAGAATTGCAGCGCGTGACGGGCAGTGTG
ATCAAATTGCCCGAACATGCCCTTGCACCGCCATCCGGTGGAGATGAAGA
GACACCAGTGCACATCATCGGACTATTCTACAGTGTACAGTCTGCCCAGC
GACGCATCCGAGCCATGATGCTTTCGACAAATCCGCCGCCAATAACCAAA
AAACAGAAAGCTGCCAAAGAACAATTGCAACAACAGCAACAGAGCCTAGC
CGGAGCCGCGTCCAGCGGTTCCCAGCAGCAACAGCCACAGTCGCCATCTC
AACAACAGGCACTGCCGCCGCAATTGCATCATCAGCCTGTGTCGTCGGCG
TCGTCATCGTCGACGCCGCCTGCACACCATCAGCAGCAGGCGTCGACGGC
AGCGACCTCACACCAGCTGCAGCAGCAGCAGCCATCGCCGCCGCCACCTG
GCAATGCAACTGCGGCCGCAGCTCAGCAGCAGCAGCAGCTGGCGAGCTCA
CAACAGGCAAGCTTTCTAGACCAT
BO33344.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:49:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Imp-RJ | 1743 | CG1691-PJ | 1..1740 | 17..1756 | 8700 | 100 | Plus |
| Imp-RF | 1722 | CG1691-PF | 1..1719 | 17..1756 | 8350 | 98.8 | Plus |
| Imp-RD | 1722 | CG1691-PD | 1..1719 | 17..1756 | 8350 | 98.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Imp-RJ | 3942 | CG1691-RJ | 1128..2867 | 17..1756 | 8700 | 100 | Plus |
| Imp-RF | 4481 | CG1691-RF | 1128..2846 | 17..1756 | 8350 | 98.8 | Plus |
| Imp-RD | 8752 | CG1691-RD | 767..2485 | 17..1756 | 8350 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:49:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10797834..10798566 | 1236..504 | 3665 | 100 | Minus |
| X | 23542271 | X | 10798619..10798995 | 504..128 | 1885 | 100 | Minus |
| X | 23542271 | X | 10797072..10797442 | 1756..1386 | 1855 | 100 | Minus |
| X | 23542271 | X | 10797508..10797666 | 1390..1232 | 795 | 100 | Minus |
| X | 23542271 | X | 10813249..10813361 | 129..17 | 565 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6920 | 1520..1722 | 210 | 59.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6911 | 1523..1694 | 209 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..7001 | 1467..1739 | 204 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2537 | 1470..1703 | 203 | 58.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6923 | 1472..1688 | 188 | 58.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2424 | 1628..1739 | 179 | 66.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6875 | 1428..1586 | 164 | 61.4 | Plus |
BO33344.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-15 10:05:18 Download gff for
BO33344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Imp-RJ | 1124..2863 | 17..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:56:18 Download gff for
BO33344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Imp-RJ | 1124..2863 | 17..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:14:29 Download gff for
BO33344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Imp-RJ | 1128..2867 | 17..1758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:14:29 Download gff for
BO33344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10797070..10797437 | 1391..1758 | 99 | <- | Minus |
| X | 10797508..10797663 | 1235..1390 | 100 | <- | Minus |
| X | 10797836..10798565 | 505..1234 | 100 | <- | Minus |
| X | 10798619..10798993 | 130..504 | 100 | <- | Minus |
| X | 10813249..10813361 | 17..129 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:56:18 Download gff for
BO33344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10691103..10691470 | 1391..1758 | 99 | <- | Minus |
| arm_X | 10691541..10691696 | 1235..1390 | 100 | <- | Minus |
| arm_X | 10691869..10692598 | 505..1234 | 100 | <- | Minus |
| arm_X | 10692652..10693026 | 130..504 | 100 | <- | Minus |
| arm_X | 10707282..10707394 | 17..129 | 100 | | Minus |
BO33344.pep Sequence
Translation from 16 to 1774
> BO33344.pep
MASELDQFADLELSKEDREQIFDPPLDRQQLEGAGTSRAAVGLNGVEFEG
SKLHAEQLDKNQRRSQRNQRNPYPGMPGPGRQADFPLRILVQSEMVGAII
GRQGSTIRTITQQSRARVDVHRKENVGSLEKSITIYGNPENCTNACKRIL
EVMQQEAISTNKGELSPECSEICLKILAHNNLIGRIIGKSGNTIKRIMQD
TDTKITVSSINDINSFNLERIITVKGLIENMSRAENQISTKLRQSYENDL
QAMAPQSLMFPGLHPMAMMSTPGNGMVFNTSMPFPSCQSFAMSKTPASVV
PPVFPNDLQETTYLYIPNNAVGAIIGTRGSHIRSIMRFSNASLKIAPLDA
DKPLDQQTERKVTIVGTPEGQWKAQYMIFEKMREEGFMCGTDDVRLTVEL
LVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPVHI
IGLFYSVQSAQRRIRAMMLSTNPPPITKKQKAAKEQLQQQQQSLAGAASS
GSQQQQPQSPSQQQALPPQLHHQPVSSASSSSTPPAHHQQQASTAATSHQ
LQQQQPSPPPPGNATAAAAQQQQQLASSQQASFLDH
BO33344.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:57:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Imp-PJ | 580 | CG1691-PJ | 1..580 | 1..580 | 2955 | 100 | Plus |
| Imp-PF | 573 | CG1691-PF | 1..573 | 1..580 | 2899 | 98.8 | Plus |
| Imp-PD | 573 | CG1691-PD | 1..573 | 1..580 | 2899 | 98.8 | Plus |
| Imp-PH | 573 | CG1691-PH | 1..573 | 1..580 | 2899 | 98.8 | Plus |
| Imp-PE | 573 | CG1691-PE | 1..573 | 1..580 | 2899 | 98.8 | Plus |
