BO33347.complete Sequence
727 bp assembled on 2012-08-22
GenBank Submission: KX799350
> BO33347.complete
GAAGTTATCAGTCGACATGGACCACGCCCATCACAGTGCGCCCGGTGTTG
ATCACTCGATGCATCACGATCATGTGGGCATGCACCACGATCACAGCGGT
ATACCTGCTGCGACAGCGTCTCCAATGGATGCAGCTTCCATGTTCGACCT
GATCCCCGATACCAGCGATTTGCAGGCAAGTCACGCGGGTCACGCCGCTC
ACGGAGCGCACAATCATGGCGGTGGCTCTGGCACGGGAATGGAGCACATG
ATGCCCATGGCGTTCCATTTTGGCTACAACGAGACGATCCTGTTCTCCTG
GTGGCACATCGAAACAGTGGCCGGTTTGATCGGCTCCATGATCGCCATCT
TCCTGCTGGCCCTAATGTACGAGGGACTGAAGTACTACCGCGAGTATCTA
TTCTGGAAGACATACAATCTGCTGGAATATCGACCTGTGACGGGGCCACA
AAGAAATCCGGAGGCACCGCGCATACCATCGCCGGCAGCGGCAGCTCCAT
CGCCCGTTCAACCTTCGATGCTGTCGATTAACCACCTGCTCCAGACACTG
CTGCACGTGCTCCAGGTGACGCTGTCCTTCCTGCTCATGCTGATCTTCAT
GACATACAACGTGTGGCTCTGCCTGATGGTTGTCCTGGGCGCCGCCGTTG
GTTACTTCCTCTTCTGCTGGAAGAAATCGGTTATCGTGGACGTAACCGAG
CACTGTCACGCAAGCTTTCTAGACCAT
BO33347.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:26:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ctr1A-RB | 696 | CG3977-PB | 1..693 | 17..709 | 3465 | 100 | Plus |
Ctr1A-RA | 696 | CG3977-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
Ctr1A-RD | 726 | CG3977-PD | 1..495 | 17..511 | 2475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:26:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ctr1A-RB | 1575 | CG3977-RB | 303..995 | 17..709 | 3465 | 100 | Plus |
Ctr1A-RA | 2103 | CG3977-RA | 201..893 | 17..709 | 3465 | 100 | Plus |
Ctr1A-RD | 1503 | CG3977-RD | 201..695 | 17..511 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:26:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6665438..6665686 | 262..510 | 1245 | 100 | Plus |
X | 23542271 | X | 6665161..6665373 | 50..262 | 1065 | 100 | Plus |
X | 23542271 | X | 6666850..6667048 | 511..709 | 995 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:26:45 has no hits.
BO33347.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:29 Download gff for
BO33347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1A-RA | 201..893 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:09 Download gff for
BO33347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1A-RA | 201..893 | 17..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:20 Download gff for
BO33347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ctr1A-RA | 201..893 | 17..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:20 Download gff for
BO33347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6666850..6667048 | 511..711 | 99 | | Plus |
X | 6665439..6665686 | 263..510 | 100 | -> | Plus |
X | 6665045..6665078 | 17..50 | 100 | -> | Plus |
X | 6665162..6665373 | 51..262 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:09 Download gff for
BO33347.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6559078..6559111 | 17..50 | 100 | -> | Plus |
arm_X | 6559195..6559406 | 51..262 | 100 | -> | Plus |
arm_X | 6559472..6559719 | 263..510 | 100 | -> | Plus |
arm_X | 6560883..6561081 | 511..711 | 99 | | Plus |
BO33347.pep Sequence
Translation from 16 to 727
> BO33347.pep
MDHAHHSAPGVDHSMHHDHVGMHHDHSGIPAATASPMDAASMFDLIPDTS
DLQASHAGHAAHGAHNHGGGSGTGMEHMMPMAFHFGYNETILFSWWHIET
VAGLIGSMIAIFLLALMYEGLKYYREYLFWKTYNLLEYRPVTGPQRNPEA
PRIPSPAAAAPSPVQPSMLSINHLLQTLLHVLQVTLSFLLMLIFMTYNVW
LCLMVVLGAAVGYFLFCWKKSVIVDVTEHCHASFLDH
BO33347.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ctr1A-PB | 231 | CG3977-PB | 1..231 | 1..231 | 1262 | 100 | Plus |
Ctr1A-PA | 231 | CG3977-PA | 1..231 | 1..231 | 1262 | 100 | Plus |
Ctr1A-PD | 241 | CG3977-PD | 1..241 | 1..231 | 1241 | 95.9 | Plus |
Ctr1A-PC | 241 | CG3977-PC | 1..241 | 1..231 | 1241 | 95.9 | Plus |
Ctr1C-PA | 270 | CG15551-PA | 3..270 | 5..231 | 343 | 33.4 | Plus |