Clone BO33347 Report

Search the DGRC for BO33347

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:333
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCtr1A-RA
Protein status:BO33347.pep: Imported from assembly
Sequenced Size:727

Clone Sequence Records

BO33347.complete Sequence

727 bp assembled on 2012-08-22

GenBank Submission: KX799350

> BO33347.complete
GAAGTTATCAGTCGACATGGACCACGCCCATCACAGTGCGCCCGGTGTTG
ATCACTCGATGCATCACGATCATGTGGGCATGCACCACGATCACAGCGGT
ATACCTGCTGCGACAGCGTCTCCAATGGATGCAGCTTCCATGTTCGACCT
GATCCCCGATACCAGCGATTTGCAGGCAAGTCACGCGGGTCACGCCGCTC
ACGGAGCGCACAATCATGGCGGTGGCTCTGGCACGGGAATGGAGCACATG
ATGCCCATGGCGTTCCATTTTGGCTACAACGAGACGATCCTGTTCTCCTG
GTGGCACATCGAAACAGTGGCCGGTTTGATCGGCTCCATGATCGCCATCT
TCCTGCTGGCCCTAATGTACGAGGGACTGAAGTACTACCGCGAGTATCTA
TTCTGGAAGACATACAATCTGCTGGAATATCGACCTGTGACGGGGCCACA
AAGAAATCCGGAGGCACCGCGCATACCATCGCCGGCAGCGGCAGCTCCAT
CGCCCGTTCAACCTTCGATGCTGTCGATTAACCACCTGCTCCAGACACTG
CTGCACGTGCTCCAGGTGACGCTGTCCTTCCTGCTCATGCTGATCTTCAT
GACATACAACGTGTGGCTCTGCCTGATGGTTGTCCTGGGCGCCGCCGTTG
GTTACTTCCTCTTCTGCTGGAAGAAATCGGTTATCGTGGACGTAACCGAG
CACTGTCACGCAAGCTTTCTAGACCAT

BO33347.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:26:45
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1A-RB 696 CG3977-PB 1..693 17..709 3465 100 Plus
Ctr1A-RA 696 CG3977-PA 1..693 17..709 3465 100 Plus
Ctr1A-RD 726 CG3977-PD 1..495 17..511 2475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:26:46
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1A-RB 1575 CG3977-RB 303..995 17..709 3465 100 Plus
Ctr1A-RA 2103 CG3977-RA 201..893 17..709 3465 100 Plus
Ctr1A-RD 1503 CG3977-RD 201..695 17..511 2475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:26:44
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6665438..6665686 262..510 1245 100 Plus
X 23542271 X 6665161..6665373 50..262 1065 100 Plus
X 23542271 X 6666850..6667048 511..709 995 100 Plus
Blast to na_te.dros performed on 2014-11-28 12:26:45 has no hits.

BO33347.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-08-22 17:08:29 Download gff for BO33347.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1A-RA 201..893 17..711 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:09 Download gff for BO33347.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1A-RA 201..893 17..711 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:04:20 Download gff for BO33347.complete
Subject Subject Range Query Range Percent Splice Strand
Ctr1A-RA 201..893 17..711 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:04:20 Download gff for BO33347.complete
Subject Subject Range Query Range Percent Splice Strand
X 6666850..6667048 511..711 99   Plus
X 6665439..6665686 263..510 100 -> Plus
X 6665045..6665078 17..50 100 -> Plus
X 6665162..6665373 51..262 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:09 Download gff for BO33347.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6559078..6559111 17..50 100 -> Plus
arm_X 6559195..6559406 51..262 100 -> Plus
arm_X 6559472..6559719 263..510 100 -> Plus
arm_X 6560883..6561081 511..711 99   Plus

BO33347.pep Sequence

Translation from 16 to 727

> BO33347.pep
MDHAHHSAPGVDHSMHHDHVGMHHDHSGIPAATASPMDAASMFDLIPDTS
DLQASHAGHAAHGAHNHGGGSGTGMEHMMPMAFHFGYNETILFSWWHIET
VAGLIGSMIAIFLLALMYEGLKYYREYLFWKTYNLLEYRPVTGPQRNPEA
PRIPSPAAAAPSPVQPSMLSINHLLQTLLHVLQVTLSFLLMLIFMTYNVW
LCLMVVLGAAVGYFLFCWKKSVIVDVTEHCHASFLDH

BO33347.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
Ctr1A-PB 231 CG3977-PB 1..231 1..231 1262 100 Plus
Ctr1A-PA 231 CG3977-PA 1..231 1..231 1262 100 Plus
Ctr1A-PD 241 CG3977-PD 1..241 1..231 1241 95.9 Plus
Ctr1A-PC 241 CG3977-PC 1..241 1..231 1241 95.9 Plus
Ctr1C-PA 270 CG15551-PA 3..270 5..231 343 33.4 Plus