BO33354.complete Sequence
2959 bp assembled on 2012-10-01
GenBank Submission: KX799444
> BO33354.complete
GAAGTTATCAGTCGACATGAATTTCTTTGGCGCCTTCATTGCGCTCGCCA
TCTGTGCACTATGCGGATTAACCCAAGCGGATATATCGCTCAAGTTGCGA
CAGCAACAGCAGCAGCAGCAACTGCAGCAGCAGCAACAACAGCCGCTGAT
CACCAAGGAGCAATACTACAAGACCGGCGGTGGCTTCCAGGAGAGCAACT
ACGGCAATTCCGGCTATCAGATCTTTGAGGTGCACAATCATTTTGCGGCC
AAGGGACCCGCCTATCTGCCGCCTCAGGGTCAGGGTGCAAGTGGTCATGC
CAACGATGATAGCTTGGACTTGAGCTTCCTTAACTTTCCCGATGCGCCAG
CTACAGCGCCAGTTGCCACTCCGGCTGCAGCTGCTCCTGCAGCAGCTCCT
GCGTCTATTCCCGTGCCCTTCCCTTCGAACTACCAGCATGATTTCCAGCG
CAAAGCTCCGGCTACATCCTCGTTGGGTTACAGTGGTCAGGCCTATCTAC
CACCCACGGCTGCCGCACCCAATGTCCAGCAGCAGCAGCAACAGCAGCAG
CAAGTGATTCAGCAGCAACAGGAGTATGTGCAGCAGCAGCAACAGCAAGT
GGTGCAGCAGCAAGTGATTCCGCAGCAGCAACAGCAAGTGGTGCAGCAGC
AACAGGTGCAACAGCAGTACAGCCAACAGAACTACGAGGCACCAGCATAT
CTGCCACCCACCACCAGCGAGGCAGTTGCTCAGCCAGTGTCCAACTACCA
GCTACCAACTACCATCAGCTATCAGCAGCAACAGAAGGTCTTCCAAGGAC
CAACATATCTGCCACCACAGCAGGAACAGCAGCAGCAGGTGCAGCAAGTT
CAAGAGGTGCAACAGCAGCAGCAGCAAGTGCAGCAGATTCAATCCGTTCA
GCAGCAGCAACAGCAGCAGATTTCAGTTCAGGAACAGGGTCAGGAATACC
GTGCTCCTGGCTATCTGCCACCTGGCTACGAGTTCTCCAATCCCGATCAG
TTGCCCGTTTCGCTCAGCCAGAGTGTCGCCACCTCGCAGAGTGTGTCGTC
CGTTCAAAATGTTGCCACCGCACAGAGTGTTGCATCCGTGCAGCAGTCTG
CCGGCGAGTATCGTGCTCCTGGCTATCTGCCACCTGGCTACGATGAACCA
CGTCCTCAGGCACCAACTCAGATCACGTACCAGCAGCCACAGCAACAGCT
GCAGCAGCAAGAGTTGCAGCAGCAACAAGTGCAGCAGCAACAAGTGCAGC
AGCAACAGGTGCAGCAGCAACAAGTGCAGCAGCAACAGTTGCAGCAGCAA
CAGGTGCAGCAGCAACAAGTGCAGCAGCAACAGGTACAGCAGCAACAGGT
GTATGCTGCTCCTACACAGGCAACCATTAGCAATCCTGGTGCCCTTCCCG
ATGGCTATGATTTCGTTAAGCCCGAAAATGCCGAGGCCGCCATTGCCGAG
CTGCACAGCCTGCAGACTCAAACCAAACTGCTGAAGCAACAGCAGGAGCA
GCAGCAGTTGCTCTTGCAACAGCAGCAGCAGCAACAGCAACAGCTGCAGC
AGCAGCAGCAACAGCAACAGCTGCAGCAGCAGCAGCAACAGATCGTGGTG
CAGTCTCAGTTGCAGGTTGCCCAGCAACAGCAAAACGCAGACATCGTCTA
TGGTCGCTCCAAGTCGCAGCAGCAACAAGCTTTGGCTCCTCAAAGTACAC
TTGCAACATCTACTGCCGGCAGCTATCAGCAACAGTTTACGGCTCCTGCT
TACCTGCCTCCAACTGCCACCGCCCCAGCTCCATCGCCAGTTGCGGCTCC
TGCTCCCGTTTCCATTGCAGCTCCTGCTCCCCTGGTTGCTCCTGCCCCTG
CTCCAGCTCCAGCTCCAGCCCCTGTTGCCGTAGTCCAGACGACAGCCACT
TCAAGTGCCTATCAACAGCAATACAGGGCTTCTGGCTATCTGCCACCAGC
AGTGGCCGCTCCTGCTTCTGTCCGAGTTGCTGCTCCGGTTCCAGCTCCGG
CTCCAGCTCCTGCTCCAGCTCCTCTGCGAGTTGCTGCTCCTGCTTCCGCT
CCCGTTCGAGCTGTTGCTCCTGCTGCAGCGCCAGCGCCCGCTGCCGCTCC
TCGCGCTCCCATCCACGTGAGTGGACCCGCTCCCATTGCCATTTCTCTGC
CAGCTCCAGCGCCCACCCAGGTGACGCACATTCACTCGCTGAGAAGCTAT
ATGAACACCGTGCAGCCCTTCGCACGCTATGCACAGCCAGTCACTCTACG
CCAGCAGCAGCAGTATCATCATGTCCAGCAGCAGCAACATCATCATGTCC
AGCAGCAGCAACAGGTGATCGAGGTGGCGCCCATGTACCGTGAGCAATCA
AAGCGTCCTCGATTCTATGCCCCCGCCTACGTAAGCAACGCTGTGCCCCG
CCAGCAGCAGGCACAGCACCACCTGCACCACCACTACCACCGCGTGGTGC
AGAGCCAGCAAAAGCTGCAGCCCACGTTAAGCTTTAAGGCGCAGCAATCG
CTGCAGAAATTCATGCCCAAGGACGTTCAGGTGGCGGTAAATGTGGCCAT
GGCGGCAACGGCACCCGTCGTGGCACCACCCGCACTGCGTGGCAGCTCCC
GTGTGCGCACCGTGCAAATAGTGAAGCCACATTCCACACGGACCTTCAAG
GTGCTGGAGCAACTCGATCAGGCTGGTGTGAAGACGATCAAAATTCTGGG
AGCGAGCAATGAGCAGCCGCAGGGACGCCATCAGGTGGTCAAGGTGGTCA
CACAGAATGCGCACAGTGGTGCGGAGAGTCATGTGCAGACCGTTAAGATC
TACGACGATGTGCAGCAGCCATTGCGATTGCTGCCACAGTCGCAGCCACA
GAGCAATGCGTACTTGCCACCGGCGCGTCCCAGGTCGCGAATTGTGCGGC
AGGCGTCGAAGCCACTGCGTCTGCATCCCGTGGCCAGTCTGGCAAGCTTT
CTAGACCAT
BO33354.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:29:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15740-RB | 2928 | CG15740-PB | 1..2925 | 17..2941 | 14625 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:29:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15740-RB | 3265 | CG15740-RB | 49..2973 | 17..2941 | 14625 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:29:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 11842954..11845877 | 2941..18 | 14605 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:29:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6440..6868 | 1220..1636 | 421 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6726..7103 | 499..891 | 407 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2200..2933 | 625..1348 | 382 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2902 | 763..1347 | 367 | 55.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2422 | 1476..1590 | 350 | 78.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6894 | 1476..1635 | 350 | 71.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2273..2958 | 627..1346 | 332 | 56.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2470..2987 | 1146..1678 | 326 | 55.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2511 | 1501..1716 | 318 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6775..7059 | 1455..1744 | 316 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6918 | 742..936 | 307 | 66.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6545..6943 | 527..937 | 305 | 58.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6889 | 770..937 | 280 | 64.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6389..6913 | 1199..1735 | 261 | 55.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6993 | 587..918 | 252 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2193..2414 | 1415..1640 | 219 | 60.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6889 | 1561..1735 | 172 | 61.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1055..1140 | 1544..1632 | 150 | 65.2 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 580..725 | 1726..1868 | 145 | 59.2 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3175..3364 | 1503..1693 | 125 | 56.3 | Plus |
BO33354.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 14:45:21 Download gff for
BO33354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15740-RB | 49..2973 | 17..2943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:33 Download gff for
BO33354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15740-RB | 49..2973 | 17..2943 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:20 Download gff for
BO33354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15740-RB | 49..2973 | 17..2943 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:20 Download gff for
BO33354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 11842952..11845877 | 17..2943 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:33 Download gff for
BO33354.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 11736985..11739910 | 17..2943 | 99 | | Minus |
BO33354.pep Sequence
Translation from 16 to 2959
> BO33354.pep
MNFFGAFIALAICALCGLTQADISLKLRQQQQQQQLQQQQQQPLITKEQY
YKTGGGFQESNYGNSGYQIFEVHNHFAAKGPAYLPPQGQGASGHANDDSL
DLSFLNFPDAPATAPVATPAAAAPAAAPASIPVPFPSNYQHDFQRKAPAT
SSLGYSGQAYLPPTAAAPNVQQQQQQQQQVIQQQQEYVQQQQQQVVQQQV
IPQQQQQVVQQQQVQQQYSQQNYEAPAYLPPTTSEAVAQPVSNYQLPTTI
SYQQQQKVFQGPTYLPPQQEQQQQVQQVQEVQQQQQQVQQIQSVQQQQQQ
QISVQEQGQEYRAPGYLPPGYEFSNPDQLPVSLSQSVATSQSVSSVQNVA
TAQSVASVQQSAGEYRAPGYLPPGYDEPRPQAPTQITYQQPQQQLQQQEL
QQQQVQQQQVQQQQVQQQQVQQQQLQQQQVQQQQVQQQQVQQQQVYAAPT
QATISNPGALPDGYDFVKPENAEAAIAELHSLQTQTKLLKQQQEQQQLLL
QQQQQQQQQLQQQQQQQQLQQQQQQIVVQSQLQVAQQQQNADIVYGRSKS
QQQQALAPQSTLATSTAGSYQQQFTAPAYLPPTATAPAPSPVAAPAPVSI
AAPAPLVAPAPAPAPAPAPVAVVQTTATSSAYQQQYRASGYLPPAVAAPA
SVRVAAPVPAPAPAPAPAPLRVAAPASAPVRAVAPAAAPAPAAAPRAPIH
VSGPAPIAISLPAPAPTQVTHIHSLRSYMNTVQPFARYAQPVTLRQQQQY
HHVQQQQHHHVQQQQQVIEVAPMYREQSKRPRFYAPAYVSNAVPRQQQAQ
HHLHHHYHRVVQSQQKLQPTLSFKAQQSLQKFMPKDVQVAVNVAMAATAP
VVAPPALRGSSRVRTVQIVKPHSTRTFKVLEQLDQAGVKTIKILGASNEQ
PQGRHQVVKVVTQNAHSGAESHVQTVKIYDDVQQPLRLLPQSQPQSNAYL
PPARPRSRIVRQASKPLRLHPVASLASFLDH
BO33354.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:54:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15740-PB | 975 | CG15740-PB | 1..975 | 1..975 | 4962 | 100 | Plus |
| ptip-PA | 2294 | CG32133-PA | 209..964 | 170..910 | 534 | 28.7 | Plus |
| ptip-PA | 2294 | CG32133-PA | 553..1369 | 18..770 | 511 | 28.5 | Plus |
| ptip-PA | 2294 | CG32133-PA | 212..1135 | 20..945 | 493 | 25.5 | Plus |
| ptip-PA | 2294 | CG32133-PA | 368..1244 | 33..950 | 469 | 26.7 | Plus |
| velo-PC | 1833 | CG10107-PC | 52..766 | 136..720 | 428 | 29.4 | Plus |
| velo-PA | 1833 | CG10107-PA | 52..766 | 136..720 | 428 | 29.4 | Plus |
| velo-PC | 1833 | CG10107-PC | 23..814 | 173..900 | 375 | 27.5 | Plus |
| velo-PA | 1833 | CG10107-PA | 23..814 | 173..900 | 375 | 27.5 | Plus |
| CG11584-PB | 662 | CG11584-PB | 87..652 | 110..717 | 358 | 27 | Plus |
| ptip-PA | 2294 | CG32133-PA | 882..1739 | 28..827 | 335 | 25.1 | Plus |
| ptip-PA | 2294 | CG32133-PA | 1184..1766 | 15..541 | 331 | 29 | Plus |
| ptip-PA | 2294 | CG32133-PA | 187..629 | 378..802 | 323 | 29.1 | Plus |
| ptip-PA | 2294 | CG32133-PA | 1150..1795 | 153..619 | 311 | 29.3 | Plus |
| velo-PC | 1833 | CG10107-PC | 4..527 | 388..950 | 203 | 24.6 | Plus |
| velo-PA | 1833 | CG10107-PA | 4..527 | 388..950 | 203 | 24.6 | Plus |
| velo-PC | 1833 | CG10107-PC | 382..758 | 29..391 | 184 | 25.5 | Plus |
| velo-PA | 1833 | CG10107-PA | 382..758 | 29..391 | 184 | 25.5 | Plus |
| ptip-PA | 2294 | CG32133-PA | 1481..1796 | 30..335 | 182 | 28.4 | Plus |
