Clone BO33357 Report

Search the DGRC for BO33357

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:333
Well:57
Vector:pDNR-Dual
Associated Gene/TranscriptcenG1A-RB
Protein status:BO33357.pep: Imported from assembly
Sequenced Size:3019

Clone Sequence Records

BO33357.complete Sequence

3019 bp assembled on 2012-10-01

GenBank Submission: KX797376

> BO33357.complete
GAAGTTATCAGTCGACATGAGTAACTACCATCCGCATTCGCATCCGCACG
CGCTCTCGCATCCGCATCCGCAGCAGGTCCATAATCAGCTGCAGAATCCC
CACCAGAACCAGTTGCCGCCCCCGCAACGCCATAACCATGCCGCGCCCAC
TGCAGCAGCCTCCGCCTCCGGAGCGCCATCATCATCAGCATCGGCATCGG
CATCAGCATCTATCCTGGTGGCCCATCCTCCCCAGCCGCTCATCAGCAAC
TCGCTGGCCATCCGGCAGGAGATCCAGCGATTCGAGAGCGTCCACCCATC
CATCTATGCCATATACGAACTGATCGATCTGCTGCCCATGGCCGATGCCC
AGATAGCCCAGTCCATTCGGGACCATGTGGTCTGCATTGAAGATTCGTTT
GTGAACAGTCAGGAATGGACAATTTCTCGTTCGGTGCCAGATCTGAGGCT
GGGAATCGTCGGTTCCCTGAACTCCGGCAAGTCAGCCCTGGTGCATCGCT
ATCTCACCGGATCCTACATGCAGGAGGAGTCGCCCGAAGGTGGTCGGTTC
AAAAAGGAGGTCTTCATCGATGGCCAGAGCTACTTGCTGCTCATTCGCGA
CGAGGGTGGAGCTCCCGAAATGCAGTTCGCTGGCTGGGTGGATGCGGTAA
TCTTTGTGTTCAGCCTGGAGAACGAGGGCAGCTTCAATACCGTCTATAAC
TACTATACGAAAATGGCGCATTTTCGTAATGGCCAGGAAATACCCATGAT
ATTGGTCGGAACGCAAGACGCCATCAGCGAGCGCAATCCTCGCGTGATTG
ACGACACCCGTGCCAGGAAATTGGCCAGCGATCTGAAGCGTTGCTCCTAC
TACGAGACCTGCGCCACCTACGGCCTGAATGTGGAGCGTGTCTTTCAGGA
TGCCTGTCAAAAGATCCTCTCGCAGCGCCTGCCTTTGCCACCACAGGTGC
AACCGGCGAGACCCACGACTCCGCAGGGCAATCGCCTGGGATTGGCTCCC
TACCAGGCGCCCACCAATGGACAACGTGGCCAGCAGCAGCTACCACTGCG
AATGAGTGCGGATTTCGCACAGGCGGAGCAGAAACTTTGGTCGCTGCAAG
CGGCCAGCAGTTCCACCATAAACGAGAATAACAACATCACCAAATACAAT
CCCGGAGCGGCCAATTCGCTGCAGGGTGATTGCTCCCAGGTGCAGTTGCG
CGATCCACGTGATCTGGCGCCACCACCGGGTAAGGAGCTGCCCACACCCA
CCTCGACGCCCACGACGAGCCGCAAGAGCCGGCGGCGTTCGAACCTCTTC
ATCCCCTCCTCTTCGAAGAAGGCCGACAAGGAGAAGGAGCCAAAGAGCAG
TGAACTGGGCAGTGGACGTTCCATACCCATTAAACAGGGCTACCTGTACA
AACGCTCTAGCAAATCCTTGAACAAGGAGTGGAAGAAGAAGTATGTGACC
CTGTGCGACGACGGCAGGCTTACCTATCATCCCTCTTTGCACGACTATAT
GGACGATGTGCACGGCAAGGAGATTCCGCTGCAGTACGTCACCGTAAAGG
TGCCGGGACAGAAACCTCGTGGCTCCAAGAGCATAATCACGAACAGTGCG
CTCACCAGTTCACTGATGGCCAATGGCCAAAGAGCTCAGAACACTCTGAG
CGATGGCATCGGTTGTCTCACCCTGGCCAAGGACAATCAGCGCAAGCTGA
GCGAGAAATTATCCCTACTCGGAGCCGGATCCATTGCAGCTGGTGCCGGT
GGAGAGCCTTTGAAGTCGAATAGCTCACAGCAGACGAGCGGTGACGAGGG
CATAGCCATGTCCAATTCAAATTCACAGACTTTTATCGCCGGAGAAGTGG
CCAATGCGGGAAATAAGCTGGAGGCCCAGACGCCGAACGTGAAGAAGCGA
CATCGCCGCATGAAGAGCAGCAGTGTCAAGGCGAACGAGGCGGACGACAA
CGATGGCTATGAATTCTACATCGTATCGCTGGACTCCAAGCAGTGGCACT
TTGAGGCTGCCAATTCCGAGGAGCGCGACGAGTGGGTAGCGGCCGTCGAG
CAGGAGATCTTCAAGAGCCTGCAGAGCATCGAGAGCAGCAAGACCAAACA
GGCCACCAGCACTGATCTCGCTGCCATGCTGGCCATCCGTCAGCGGGTTC
CTGGCAACGGCTTCTGCGTCGACTGTGGAGCGCCAAATCCTGAATGGGCT
AGCTTAAACTTGGGCGTACTCATGTGCATCGAGTGCTCGGGCGTGCATCG
CAATCTTGGCTCGCACATATCCAAGGTTCGCTCTCTGGGCCTGGATGACT
GGCCATCCCCGCATCTCAGTGTGATGCTGGCCATTGGCAACAGTCTGGCC
AACTCGGTTTGGGAGTCGAACACGCGGCAGCGGGTCAAGCCCACTTCGCA
GGCCAGTCGCGAGGACAAAGAGCGATGGGTGCGCAGCAAGTACGAGGCCA
AGGAGTTCCTGACGCCACTGGGCAACGGATCCTCAGCGCATCCAAGCCCA
AGTCCGGGTCAGCAGTTGATCGAGGCTGTGATCAGGGCGGACATCAAGTC
GATCGTTTCGATCTTGGCCAATTGTCCGTCCGAGGTGACCAATGCGAATG
TCAGCGCAAGAGATGTGCGAACTCCGCTGCTGCTTGCCTGTGCCATAGGC
AATCTGGCCATAGCACAGCTGCTCATATGGAATGGCGCAAACATTAAGCA
CACGGATCATGAGGGTCGCACCTGCCTGGCCTACGCTCGAGCGGCACAAT
CCCTGGCCACCGCCAAGTCGATCAAAGCCGCTGCAGCTGCGCAGGCGGGC
ACAACGATTCCGGCTCCTGCTCCGCCCACAAACGGTGGCATTCCTGCTCC
CCAATACAATGTCGAGGACACGACGGCGCTGGTGGAGCTGCTCGAGGGAC
TGGGCTGTCCAGAGGCGGCTCCTCTGACGGCCAGTGGCACTTTGCCTAGG
AGACGTGACACGTTAGGCACTCCGTACGAGAAGTCGGTGTCGGGTGTGAT
CGCAAGCTTTCTAGACCAT

BO33357.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
CenG1A-RB 2988 CG31811-PB 1..2985 17..3001 14925 100 Plus
CenG1A-RA 2784 CG31811-PA 171..2781 391..3001 13055 100 Plus
CenG1A-RC 2292 CG31811-PC 1..2289 713..3001 11445 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
CenG1A-RB 4444 CG31811-RB 493..3478 16..3001 14930 100 Plus
CenG1A-RA 3869 CG31811-RA 749..3359 391..3001 13055 100 Plus
CenG1A-RC 3516 CG31811-RC 172..2550 623..3001 11895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:29:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 13895456..13896740 902..2186 6425 100 Plus
2L 23513712 2L 13836056..13836432 16..392 1885 100 Plus
2L 23513712 2L 13896986..13897361 2305..2680 1880 100 Plus
2L 23513712 2L 13897425..13897746 2680..3001 1610 100 Plus
2L 23513712 2L 13891298..13891532 391..625 1175 100 Plus
2L 23513712 2L 13895026..13895170 623..767 725 100 Plus
2L 23513712 2L 13895253..13895389 766..902 685 100 Plus
2L 23513712 2L 13896801..13896922 2183..2304 595 99.2 Plus
Blast to na_te.dros performed on 2014-11-28 12:29:42 has no hits.

BO33357.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 14:45:22 Download gff for BO33357.complete
Subject Subject Range Query Range Percent Splice Strand
cenG1A-RB 491..3475 17..3003 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:34 Download gff for BO33357.complete
Subject Subject Range Query Range Percent Splice Strand
CenG1A-RB 494..3478 17..3003 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:23 Download gff for BO33357.complete
Subject Subject Range Query Range Percent Splice Strand
CenG1A-RB 494..3478 17..3003 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:23 Download gff for BO33357.complete
Subject Subject Range Query Range Percent Splice Strand
2L 13895255..13895389 768..902 100 -> Plus
2L 13891300..13891532 393..625 100 -> Plus
2L 13895029..13895170 626..767 100 -> Plus
2L 13836057..13836432 17..392 100 -> Plus
2L 13895457..13896740 903..2186 100 -> Plus
2L 13896805..13896922 2187..2304 100 -> Plus
2L 13896986..13897361 2305..2680 100 -> Plus
2L 13897426..13897746 2681..3003 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:34 Download gff for BO33357.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 13895029..13895170 626..767 100 -> Plus
arm_2L 13895255..13895389 768..902 100 -> Plus
arm_2L 13836057..13836432 17..392 100 -> Plus
arm_2L 13891300..13891532 393..625 100 -> Plus
arm_2L 13895457..13896740 903..2186 100 -> Plus
arm_2L 13896805..13896922 2187..2304 100 -> Plus
arm_2L 13896986..13897361 2305..2680 100 -> Plus
arm_2L 13897426..13897746 2681..3003 99   Plus

BO33357.pep Sequence

Translation from 16 to 3019

> BO33357.pep
MSNYHPHSHPHALSHPHPQQVHNQLQNPHQNQLPPPQRHNHAAPTAAASA
SGAPSSSASASASASILVAHPPQPLISNSLAIRQEIQRFESVHPSIYAIY
ELIDLLPMADAQIAQSIRDHVVCIEDSFVNSQEWTISRSVPDLRLGIVGS
LNSGKSALVHRYLTGSYMQEESPEGGRFKKEVFIDGQSYLLLIRDEGGAP
EMQFAGWVDAVIFVFSLENEGSFNTVYNYYTKMAHFRNGQEIPMILVGTQ
DAISERNPRVIDDTRARKLASDLKRCSYYETCATYGLNVERVFQDACQKI
LSQRLPLPPQVQPARPTTPQGNRLGLAPYQAPTNGQRGQQQLPLRMSADF
AQAEQKLWSLQAASSSTINENNNITKYNPGAANSLQGDCSQVQLRDPRDL
APPPGKELPTPTSTPTTSRKSRRRSNLFIPSSSKKADKEKEPKSSELGSG
RSIPIKQGYLYKRSSKSLNKEWKKKYVTLCDDGRLTYHPSLHDYMDDVHG
KEIPLQYVTVKVPGQKPRGSKSIITNSALTSSLMANGQRAQNTLSDGIGC
LTLAKDNQRKLSEKLSLLGAGSIAAGAGGEPLKSNSSQQTSGDEGIAMSN
SNSQTFIAGEVANAGNKLEAQTPNVKKRHRRMKSSSVKANEADDNDGYEF
YIVSLDSKQWHFEAANSEERDEWVAAVEQEIFKSLQSIESSKTKQATSTD
LAAMLAIRQRVPGNGFCVDCGAPNPEWASLNLGVLMCIECSGVHRNLGSH
ISKVRSLGLDDWPSPHLSVMLAIGNSLANSVWESNTRQRVKPTSQASRED
KERWVRSKYEAKEFLTPLGNGSSAHPSPSPGQQLIEAVIRADIKSIVSIL
ANCPSEVTNANVSARDVRTPLLLACAIGNLAIAQLLIWNGANIKHTDHEG
RTCLAYARAAQSLATAKSIKAAAAAQAGTTIPAPAPPTNGGIPAPQYNVE
DTTALVELLEGLGCPEAAPLTASGTLPRRRDTLGTPYEKSVSGVIASFLD
H

BO33357.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:54:40
Subject Length Description Subject Range Query Range Score Percent Strand
CenG1A-PB 995 CG31811-PB 1..995 1..995 5149 100 Plus
CenG1A-PA 927 CG31811-PA 58..927 126..995 4493 100 Plus
CenG1A-PC 763 CG31811-PC 1..763 233..995 3936 100 Plus
CenB1A-PB 598 CG6742-PB 84..267 640..815 312 35.3 Plus
CenB1A-PA 828 CG6742-PA 314..497 640..815 312 35.3 Plus