BO33357.complete Sequence
3019 bp assembled on 2012-10-01
GenBank Submission: KX797376
> BO33357.complete
GAAGTTATCAGTCGACATGAGTAACTACCATCCGCATTCGCATCCGCACG
CGCTCTCGCATCCGCATCCGCAGCAGGTCCATAATCAGCTGCAGAATCCC
CACCAGAACCAGTTGCCGCCCCCGCAACGCCATAACCATGCCGCGCCCAC
TGCAGCAGCCTCCGCCTCCGGAGCGCCATCATCATCAGCATCGGCATCGG
CATCAGCATCTATCCTGGTGGCCCATCCTCCCCAGCCGCTCATCAGCAAC
TCGCTGGCCATCCGGCAGGAGATCCAGCGATTCGAGAGCGTCCACCCATC
CATCTATGCCATATACGAACTGATCGATCTGCTGCCCATGGCCGATGCCC
AGATAGCCCAGTCCATTCGGGACCATGTGGTCTGCATTGAAGATTCGTTT
GTGAACAGTCAGGAATGGACAATTTCTCGTTCGGTGCCAGATCTGAGGCT
GGGAATCGTCGGTTCCCTGAACTCCGGCAAGTCAGCCCTGGTGCATCGCT
ATCTCACCGGATCCTACATGCAGGAGGAGTCGCCCGAAGGTGGTCGGTTC
AAAAAGGAGGTCTTCATCGATGGCCAGAGCTACTTGCTGCTCATTCGCGA
CGAGGGTGGAGCTCCCGAAATGCAGTTCGCTGGCTGGGTGGATGCGGTAA
TCTTTGTGTTCAGCCTGGAGAACGAGGGCAGCTTCAATACCGTCTATAAC
TACTATACGAAAATGGCGCATTTTCGTAATGGCCAGGAAATACCCATGAT
ATTGGTCGGAACGCAAGACGCCATCAGCGAGCGCAATCCTCGCGTGATTG
ACGACACCCGTGCCAGGAAATTGGCCAGCGATCTGAAGCGTTGCTCCTAC
TACGAGACCTGCGCCACCTACGGCCTGAATGTGGAGCGTGTCTTTCAGGA
TGCCTGTCAAAAGATCCTCTCGCAGCGCCTGCCTTTGCCACCACAGGTGC
AACCGGCGAGACCCACGACTCCGCAGGGCAATCGCCTGGGATTGGCTCCC
TACCAGGCGCCCACCAATGGACAACGTGGCCAGCAGCAGCTACCACTGCG
AATGAGTGCGGATTTCGCACAGGCGGAGCAGAAACTTTGGTCGCTGCAAG
CGGCCAGCAGTTCCACCATAAACGAGAATAACAACATCACCAAATACAAT
CCCGGAGCGGCCAATTCGCTGCAGGGTGATTGCTCCCAGGTGCAGTTGCG
CGATCCACGTGATCTGGCGCCACCACCGGGTAAGGAGCTGCCCACACCCA
CCTCGACGCCCACGACGAGCCGCAAGAGCCGGCGGCGTTCGAACCTCTTC
ATCCCCTCCTCTTCGAAGAAGGCCGACAAGGAGAAGGAGCCAAAGAGCAG
TGAACTGGGCAGTGGACGTTCCATACCCATTAAACAGGGCTACCTGTACA
AACGCTCTAGCAAATCCTTGAACAAGGAGTGGAAGAAGAAGTATGTGACC
CTGTGCGACGACGGCAGGCTTACCTATCATCCCTCTTTGCACGACTATAT
GGACGATGTGCACGGCAAGGAGATTCCGCTGCAGTACGTCACCGTAAAGG
TGCCGGGACAGAAACCTCGTGGCTCCAAGAGCATAATCACGAACAGTGCG
CTCACCAGTTCACTGATGGCCAATGGCCAAAGAGCTCAGAACACTCTGAG
CGATGGCATCGGTTGTCTCACCCTGGCCAAGGACAATCAGCGCAAGCTGA
GCGAGAAATTATCCCTACTCGGAGCCGGATCCATTGCAGCTGGTGCCGGT
GGAGAGCCTTTGAAGTCGAATAGCTCACAGCAGACGAGCGGTGACGAGGG
CATAGCCATGTCCAATTCAAATTCACAGACTTTTATCGCCGGAGAAGTGG
CCAATGCGGGAAATAAGCTGGAGGCCCAGACGCCGAACGTGAAGAAGCGA
CATCGCCGCATGAAGAGCAGCAGTGTCAAGGCGAACGAGGCGGACGACAA
CGATGGCTATGAATTCTACATCGTATCGCTGGACTCCAAGCAGTGGCACT
TTGAGGCTGCCAATTCCGAGGAGCGCGACGAGTGGGTAGCGGCCGTCGAG
CAGGAGATCTTCAAGAGCCTGCAGAGCATCGAGAGCAGCAAGACCAAACA
GGCCACCAGCACTGATCTCGCTGCCATGCTGGCCATCCGTCAGCGGGTTC
CTGGCAACGGCTTCTGCGTCGACTGTGGAGCGCCAAATCCTGAATGGGCT
AGCTTAAACTTGGGCGTACTCATGTGCATCGAGTGCTCGGGCGTGCATCG
CAATCTTGGCTCGCACATATCCAAGGTTCGCTCTCTGGGCCTGGATGACT
GGCCATCCCCGCATCTCAGTGTGATGCTGGCCATTGGCAACAGTCTGGCC
AACTCGGTTTGGGAGTCGAACACGCGGCAGCGGGTCAAGCCCACTTCGCA
GGCCAGTCGCGAGGACAAAGAGCGATGGGTGCGCAGCAAGTACGAGGCCA
AGGAGTTCCTGACGCCACTGGGCAACGGATCCTCAGCGCATCCAAGCCCA
AGTCCGGGTCAGCAGTTGATCGAGGCTGTGATCAGGGCGGACATCAAGTC
GATCGTTTCGATCTTGGCCAATTGTCCGTCCGAGGTGACCAATGCGAATG
TCAGCGCAAGAGATGTGCGAACTCCGCTGCTGCTTGCCTGTGCCATAGGC
AATCTGGCCATAGCACAGCTGCTCATATGGAATGGCGCAAACATTAAGCA
CACGGATCATGAGGGTCGCACCTGCCTGGCCTACGCTCGAGCGGCACAAT
CCCTGGCCACCGCCAAGTCGATCAAAGCCGCTGCAGCTGCGCAGGCGGGC
ACAACGATTCCGGCTCCTGCTCCGCCCACAAACGGTGGCATTCCTGCTCC
CCAATACAATGTCGAGGACACGACGGCGCTGGTGGAGCTGCTCGAGGGAC
TGGGCTGTCCAGAGGCGGCTCCTCTGACGGCCAGTGGCACTTTGCCTAGG
AGACGTGACACGTTAGGCACTCCGTACGAGAAGTCGGTGTCGGGTGTGAT
CGCAAGCTTTCTAGACCAT
BO33357.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CenG1A-RB | 2988 | CG31811-PB | 1..2985 | 17..3001 | 14925 | 100 | Plus |
CenG1A-RA | 2784 | CG31811-PA | 171..2781 | 391..3001 | 13055 | 100 | Plus |
CenG1A-RC | 2292 | CG31811-PC | 1..2289 | 713..3001 | 11445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CenG1A-RB | 4444 | CG31811-RB | 493..3478 | 16..3001 | 14930 | 100 | Plus |
CenG1A-RA | 3869 | CG31811-RA | 749..3359 | 391..3001 | 13055 | 100 | Plus |
CenG1A-RC | 3516 | CG31811-RC | 172..2550 | 623..3001 | 11895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:29:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 13895456..13896740 | 902..2186 | 6425 | 100 | Plus |
2L | 23513712 | 2L | 13836056..13836432 | 16..392 | 1885 | 100 | Plus |
2L | 23513712 | 2L | 13896986..13897361 | 2305..2680 | 1880 | 100 | Plus |
2L | 23513712 | 2L | 13897425..13897746 | 2680..3001 | 1610 | 100 | Plus |
2L | 23513712 | 2L | 13891298..13891532 | 391..625 | 1175 | 100 | Plus |
2L | 23513712 | 2L | 13895026..13895170 | 623..767 | 725 | 100 | Plus |
2L | 23513712 | 2L | 13895253..13895389 | 766..902 | 685 | 100 | Plus |
2L | 23513712 | 2L | 13896801..13896922 | 2183..2304 | 595 | 99.2 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:29:42 has no hits.
BO33357.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 14:45:22 Download gff for
BO33357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cenG1A-RB | 491..3475 | 17..3003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:34 Download gff for
BO33357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CenG1A-RB | 494..3478 | 17..3003 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:23 Download gff for
BO33357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CenG1A-RB | 494..3478 | 17..3003 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:23 Download gff for
BO33357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 13895255..13895389 | 768..902 | 100 | -> | Plus |
2L | 13891300..13891532 | 393..625 | 100 | -> | Plus |
2L | 13895029..13895170 | 626..767 | 100 | -> | Plus |
2L | 13836057..13836432 | 17..392 | 100 | -> | Plus |
2L | 13895457..13896740 | 903..2186 | 100 | -> | Plus |
2L | 13896805..13896922 | 2187..2304 | 100 | -> | Plus |
2L | 13896986..13897361 | 2305..2680 | 100 | -> | Plus |
2L | 13897426..13897746 | 2681..3003 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:34 Download gff for
BO33357.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 13895029..13895170 | 626..767 | 100 | -> | Plus |
arm_2L | 13895255..13895389 | 768..902 | 100 | -> | Plus |
arm_2L | 13836057..13836432 | 17..392 | 100 | -> | Plus |
arm_2L | 13891300..13891532 | 393..625 | 100 | -> | Plus |
arm_2L | 13895457..13896740 | 903..2186 | 100 | -> | Plus |
arm_2L | 13896805..13896922 | 2187..2304 | 100 | -> | Plus |
arm_2L | 13896986..13897361 | 2305..2680 | 100 | -> | Plus |
arm_2L | 13897426..13897746 | 2681..3003 | 99 | | Plus |
BO33357.pep Sequence
Translation from 16 to 3019
> BO33357.pep
MSNYHPHSHPHALSHPHPQQVHNQLQNPHQNQLPPPQRHNHAAPTAAASA
SGAPSSSASASASASILVAHPPQPLISNSLAIRQEIQRFESVHPSIYAIY
ELIDLLPMADAQIAQSIRDHVVCIEDSFVNSQEWTISRSVPDLRLGIVGS
LNSGKSALVHRYLTGSYMQEESPEGGRFKKEVFIDGQSYLLLIRDEGGAP
EMQFAGWVDAVIFVFSLENEGSFNTVYNYYTKMAHFRNGQEIPMILVGTQ
DAISERNPRVIDDTRARKLASDLKRCSYYETCATYGLNVERVFQDACQKI
LSQRLPLPPQVQPARPTTPQGNRLGLAPYQAPTNGQRGQQQLPLRMSADF
AQAEQKLWSLQAASSSTINENNNITKYNPGAANSLQGDCSQVQLRDPRDL
APPPGKELPTPTSTPTTSRKSRRRSNLFIPSSSKKADKEKEPKSSELGSG
RSIPIKQGYLYKRSSKSLNKEWKKKYVTLCDDGRLTYHPSLHDYMDDVHG
KEIPLQYVTVKVPGQKPRGSKSIITNSALTSSLMANGQRAQNTLSDGIGC
LTLAKDNQRKLSEKLSLLGAGSIAAGAGGEPLKSNSSQQTSGDEGIAMSN
SNSQTFIAGEVANAGNKLEAQTPNVKKRHRRMKSSSVKANEADDNDGYEF
YIVSLDSKQWHFEAANSEERDEWVAAVEQEIFKSLQSIESSKTKQATSTD
LAAMLAIRQRVPGNGFCVDCGAPNPEWASLNLGVLMCIECSGVHRNLGSH
ISKVRSLGLDDWPSPHLSVMLAIGNSLANSVWESNTRQRVKPTSQASRED
KERWVRSKYEAKEFLTPLGNGSSAHPSPSPGQQLIEAVIRADIKSIVSIL
ANCPSEVTNANVSARDVRTPLLLACAIGNLAIAQLLIWNGANIKHTDHEG
RTCLAYARAAQSLATAKSIKAAAAAQAGTTIPAPAPPTNGGIPAPQYNVE
DTTALVELLEGLGCPEAAPLTASGTLPRRRDTLGTPYEKSVSGVIASFLD
H
BO33357.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CenG1A-PB | 995 | CG31811-PB | 1..995 | 1..995 | 5149 | 100 | Plus |
CenG1A-PA | 927 | CG31811-PA | 58..927 | 126..995 | 4493 | 100 | Plus |
CenG1A-PC | 763 | CG31811-PC | 1..763 | 233..995 | 3936 | 100 | Plus |
CenB1A-PB | 598 | CG6742-PB | 84..267 | 640..815 | 312 | 35.3 | Plus |
CenB1A-PA | 828 | CG6742-PA | 314..497 | 640..815 | 312 | 35.3 | Plus |