BO33364.complete Sequence
4240 bp assembled on 2012-10-03
GenBank Submission: KX795467
> BO33364.complete
GAAGTTATCAGTCGACATGGATAGCAGTGCAAAGCCAACGCGGAAAAATC
CGCGACAGCATGCAAATATTATTTCACAACTAATATTTGCCTGGGCGATA
CCATTACTATATCGAGGTTCCCGCAGAGGCCTTAATACGGATGACCTGAC
ACAATGTCTGAAGGAAGATCGATCCGAGCAGTTGGGCGACCGTTTGGAGG
ATCAATGGTTTAAGGAACTAGAGCGATCTCACCGCAAGAAACAGAAGCCG
CATCTCAGAAACGCACTTTTCCGCTGTTTCCTAGGACCCACGATCATCAA
TGGCCTCATTTGCTTTATCTACATAGTGATCAAGACCTTAATTCCAGCTG
TTCTTGCACAGCTGTTGATTCAGTTTCAAAAAACTCCTGTTGCGCAATTA
AGAAATATCGATGTCAATGATATTTCAATATCAGATTCCCTGAATCGAAC
AGCACGGGCAATTCCAAACTATGTGCTGAGTCAGGCTGTCGCCAACTCTA
GTGGATCTCCAGGGGATGCACTTTTCCCCAAATCGCTGGACAAAGCGGGT
CCACTGGAGCCGATTCAGCCTCCAGTAGAGGAAGTGGATCACAATGCAAC
CGCTGTGCGAAGCATCTTGGATCAGACCGTCGAGCACATGTGGAACGATA
TGAACAGTCTGGGCGCCGTCCTGGTTCTTTCGACGCTGTTCTGCTGCTTC
CTGTTGCACCACGTCGATCTCCGACAGCGCCTAATGGGTGCACGGATGCG
AATAGCCTGCTGCTCGCTGATCTACCGGAAAACTCTACGGCTCTCGATGA
AAACGGCTGGTCAGACGCCAGCTGGTTACCTAATCAACCTTCTTTCGAAT
GATGTGAATCGTTTGGACTATGGCTTCATATTCATGCACTGGATCTGGAT
TATGCCATTGCAGGCGATGCTCACGTGCTACCTGATTTGGCTGAACATTG
GCATCCCAGCAATTGTGGGTGTAGTTGGACTGCTGCTAAAAACGGTGCCC
GTGCAGACGGCCTTGAGCAAGGTAACCTCTGTGCTGCGGATGAGAATTGC
GGAGCGAACGGACGCGAGAGTGGGCATTATGAACGAGCTGGTGCAGGGCA
TTCAGGTTATAAAGATGTACGCCTGGGAAAAACCGTTCCAGGCGGTGGTG
GCCGAAGCTCGGCGTAGCGAGATCAAGCAGATCCGATATGCATCTTACCT
GCGTGGCTTCTACCTCAGCACCATGGTGTTCACGGAGCGATCCACTTTGT
ACATCACCCTGGCAGCGGCTGCTTTGATGGGCCAAACCATAACCGCAGAC
TTTGTGTTCTCAGCAGCCAGTTACTACAATATCCTGCAACTGGTGGCTGC
CATTTGGTATCCACTAGCTGTAAGCTTTGGAGCGGAAGCATTGGTTTCTC
TGCGTCGGATTCAGGACTTCCTTATGCTCGAGGGACGTGAGGAGCGCACT
CAAGGACTTACCCATAAGCGAGATCAGGAAGGTGGAGACTCCAGAGCAGT
GACCATTAAGGACATTAATGCCAGCTGGGATATTGAGAAGCCACAGAAAA
CGCTCCAAAGCATTAATCTGCAGATCGAGAAGGGCCAACTGTGCGCAGTT
ATTGGACCGGTAGGTGCCGGAAAGAGTTCTATCCTCCAGTTACTGCTGGG
TGAACTGCCCGTTATCGATGGAGGCGTTTTTATCCAGGGTGACCTCTCCT
ATGCAGCCCAGGAACCATGGTTATTTACGGGATCGGTGCGAAATAACATC
CTTTTCGGTGAAGAGTTTGATAGGAAGCGTTACCAGGAGGTAACACGGTG
TTGTGCCCTTAGCACGGATTTCCAACAGCTGCCAAACGGAGACAAAACTC
TTGTGGGTGAGCGTGGGGCATCCCTTTCCGGAGGCCAAAGAGCACGCATC
AGCTTGGCCCGAGCTGTCTATAAGCCCGCACAGATTTACTTGATGGATGA
TCCGCTAAGTGCTGTTGATGCGCACGTGGGCAGGCATCTCTTCGATGAGG
TGATTGGACCCAGAGGACGACTGGCTCAGCTGAAGGCGACTCGCATTCTA
GTGACCCACCAGGTGCACTTCCTGTCCGAGGCCGACGTTATTGTTATTGT
CGACCAAGGAAGAATTTTAAGGCAAGGCACCTACCAGGAGCTGATCAACA
GTGATCTGGACTTCGCTAGGCTCCTTGAGCGACCCAAGGAGGAGGAGGAA
GGGGAAAACAGTCGCAATCAAACATCCCCGCTGAGTGTCAATTCACTGGA
GAGTGACGACGAGGACATACCTTTCATCGATGGTGTAAAAGATGGGTACC
AGCAGTTGAGAAAACAGAGCAGCTCGGTACATGGCAGCAAGTCGTTGGAC
AGTACCCAACTGGATGATAATGTCGATGAGGATGATCTGGCCGAGGCCCA
AGCATCTGGTGGCATTTCACCACGCGTTTGGTACGAGTACTTCCATGCGG
GCAGTACTCTTCTGAGCTTCAGCTTCATGGTCTTTGTTATGGTGATGTCC
CAGGTGGTGTGCAGTAGTTCCGATTTCTTTGCGAACATCTGGACACAGCA
GGAGCATCAGAGGTCGCAGGGAGAGGCCACTTTCTCAACCTTCGAGTGCA
TGTACATATACGGTGCTCTGATCATCGCCGTGGTGATCATGACCACATTC
CGTGGCTTCCTGTTCTTTAAGATTTGCATGCATGCCTCCAAGGTGCTGCA
CGATCGCATGTTTGCCTGCATCCTGCACGCCACCATGAGATTCTTTGACA
CCACTCCGTCTGGAAGGATTCTGAATCGCTTCTCCAAGGATATGGGCGCC
ATTGATGAGTTGCTGCCGCGGGCCATGATGGATTTTATACAGATCGCTCT
GGTGATGTTTGGAATTCTGATTGTTATTGGTATACTGAATCCGGTTTTGG
TGGCCGCCATGTTGGTGGTAGCCGTTGTGGATGTGCTCATCCTGAAGTTG
TACCTGAGACCTTCGCAGGATCTCAAGCGATTGGAGGGCATATGCCGCAG
TCCGGTGTTTTCCCATCTCAGTGCTTCCCTTACGGGTCTGGCCATCATTC
GATCCCGCCAGTTGCAGGATGTGGTGGCCAAGGAGTTTGATTTGCTGCAG
GATGTGCACAGTAGCGTGTGGCAGCTGACCATGGCAGTGAATACGACTTT
AGGCTTGTGGCTGGACTGTGTCAGTTGCATCTTCCTTACCTCTGTCACCT
TCAGCTTCATTATCTCCAGTGAAACCACTTATAGCGGCAACGTAGGCTTG
GCCATTGCCCAGGCCATGATCCTAACCGGAATGGTGCAATATGGAGTGCG
ACAAGTGGCCGAGTCCTTGCAGCAAATGACCAGCGTGGAGCGCGTCCTGC
AATACACCGAACTGGAGCAGGAGCCGGCGCTGGGCGAAAAAACGCCACCG
CAGCAGTGGCCCACACGCGGTCAGGTGGAGTTCCGCAATATGAGCTGTCG
TTATGATCCAAATGGATCGCCGGTGCTTAGGAACCTGAATCTCACCATCG
AGGCGGGCTGGAAGGTTGGCATTGTGGGACGTACAGGAGCTGGGAAATCG
TCGCTAATTGGAGCTCTCTTCCGATTGGCTCACATCGAGGGAGAGATTTT
TATCGATGGCATAGAGACGGGAACGATTTCATTGGAAATTCTGCGCACCC
GCATCTCGATTATACCCCAGGATCCGGTACTGTTTTCCGCTACCATCCGC
TACAATCTGGACCCCTTCGAGCGGTATACCGACGCTGAGCTGTGGAGCGC
TTTGGAAGATGTGGAGCTGCGTAAAGCCATTCCCGGTCTGGACTACATGG
TAACGGAGAGGGGCGGCAATTTCAGCGTGGGCCAACGTCAATTGCTCTGC
CTGGCCAGGGCGATTCTGCGAAACAACAAGGTGCTGGTACTGGATGAGGC
CACGGCCAATGTGGATCCACAAACCGATGCCCTGATCCAGCGCACCATAC
GCATCAAGTTCAAGCAGTGCACAGTGCTCACCGTTGCCCATCGATTGCAC
ACAGTCATGGATTCGGATCGGATTATAGTAATGGATGCTGGTGTCGCCGT
GGAATTCGATGTGCCGTACTTGCTGTTGAAGAAGTCACAGGGACATCTCC
GGCAAATGGTAGAGGCCACAGGCGGGGAATCGGAAGCACTGAAGAAGACG
GCCAGTGACAGCCACAAAAGAATGCAAAGAGAACGGGACGAGCGAGATCG
CGATCAGGATGAGAGCCAGGAGGCAAGCTTTCTAGACCAT
BO33364.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:33:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5789-RB | 4209 | CG5789-PB | 1..4206 | 17..4222 | 21030 | 100 | Plus |
| CG5789-RA | 4209 | CG5789-PA | 1..4206 | 17..4222 | 21030 | 100 | Plus |
| CG31792-RC | 3972 | CG31792-PC | 3579..3803 | 3817..4041 | 375 | 77.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:33:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5789-RB | 5068 | CG5789-RB | 144..4350 | 16..4222 | 21035 | 100 | Plus |
| CG5789-RA | 5188 | CG5789-RA | 264..4470 | 16..4222 | 21035 | 100 | Plus |
| CG31792-RC | 4390 | CG31792-RC | 3739..3963 | 3817..4041 | 375 | 77.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:33:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24538988..24540818 | 2348..518 | 9140 | 99.9 | Minus |
| 3R | 32079331 | 3R | 24538049..24538929 | 3224..2344 | 4405 | 100 | Minus |
| 3R | 32079331 | 3R | 24537287..24537983 | 3921..3225 | 3485 | 100 | Minus |
| 3R | 32079331 | 3R | 24536922..24537222 | 4222..3922 | 1505 | 100 | Minus |
| 3R | 32079331 | 3R | 24541358..24541543 | 201..16 | 930 | 100 | Minus |
| 3R | 32079331 | 3R | 24540883..24541067 | 518..334 | 925 | 100 | Minus |
| 3R | 32079331 | 3R | 24541119..24541251 | 334..202 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 19002003..19002227 | 3817..4041 | 375 | 77.8 | Plus |
| 3R | 32079331 | 3R | 11575224..11575448 | 3818..4042 | 360 | 77.3 | Plus |
| 2R | 25286936 | 2R | 9394770..9394994 | 3817..4041 | 360 | 77.3 | Plus |
| 2L | 23513712 | 2L | 8356193..8356393 | 4017..3817 | 345 | 78.1 | Minus |
| 2L | 23513712 | 2L | 19007629..19007793 | 3817..3981 | 255 | 77 | Plus |
| 3R | 32079331 | 3R | 19867723..19867923 | 4017..3817 | 240 | 74.6 | Minus |
| 3R | 32079331 | 3R | 19868007..19868112 | 3745..3640 | 200 | 79.2 | Minus |
| 2R | 25286936 | 2R | 21286420..21286489 | 3581..3512 | 200 | 85.7 | Minus |
| 2L | 23513712 | 2L | 20929791..20929991 | 4042..3842 | 195 | 73.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 12:33:15 has no hits.
BO33364.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-03 10:28:25 Download gff for
BO33364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5789-RA | 258..4463 | 17..4224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:11 Download gff for
BO33364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5789-RA | 265..4470 | 17..4224 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:42 Download gff for
BO33364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5789-RA | 265..4470 | 17..4224 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:42 Download gff for
BO33364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24541358..24541542 | 17..201 | 100 | | Minus |
| 3R | 24536919..24537222 | 3922..4224 | 99 | <- | Minus |
| 3R | 24537287..24537983 | 3225..3921 | 100 | <- | Minus |
| 3R | 24538049..24538928 | 2345..3224 | 100 | <- | Minus |
| 3R | 24538992..24540817 | 519..2344 | 100 | <- | Minus |
| 3R | 24540883..24541067 | 334..518 | 100 | <- | Minus |
| 3R | 24541120..24541251 | 202..333 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:11 Download gff for
BO33364.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20366842..20366973 | 202..333 | 100 | <- | Minus |
| arm_3R | 20366605..20366789 | 334..518 | 100 | <- | Minus |
| arm_3R | 20362641..20362944 | 3922..4224 | 99 | <- | Minus |
| arm_3R | 20363009..20363705 | 3225..3921 | 100 | <- | Minus |
| arm_3R | 20363771..20364650 | 2345..3224 | 100 | <- | Minus |
| arm_3R | 20364714..20366539 | 519..2344 | 100 | <- | Minus |
| arm_3R | 20367080..20367264 | 17..201 | 100 | | Minus |
BO33364.pep Sequence
Translation from 16 to 4240
> BO33364.pep
MDSSAKPTRKNPRQHANIISQLIFAWAIPLLYRGSRRGLNTDDLTQCLKE
DRSEQLGDRLEDQWFKELERSHRKKQKPHLRNALFRCFLGPTIINGLICF
IYIVIKTLIPAVLAQLLIQFQKTPVAQLRNIDVNDISISDSLNRTARAIP
NYVLSQAVANSSGSPGDALFPKSLDKAGPLEPIQPPVEEVDHNATAVRSI
LDQTVEHMWNDMNSLGAVLVLSTLFCCFLLHHVDLRQRLMGARMRIACCS
LIYRKTLRLSMKTAGQTPAGYLINLLSNDVNRLDYGFIFMHWIWIMPLQA
MLTCYLIWLNIGIPAIVGVVGLLLKTVPVQTALSKVTSVLRMRIAERTDA
RVGIMNELVQGIQVIKMYAWEKPFQAVVAEARRSEIKQIRYASYLRGFYL
STMVFTERSTLYITLAAAALMGQTITADFVFSAASYYNILQLVAAIWYPL
AVSFGAEALVSLRRIQDFLMLEGREERTQGLTHKRDQEGGDSRAVTIKDI
NASWDIEKPQKTLQSINLQIEKGQLCAVIGPVGAGKSSILQLLLGELPVI
DGGVFIQGDLSYAAQEPWLFTGSVRNNILFGEEFDRKRYQEVTRCCALST
DFQQLPNGDKTLVGERGASLSGGQRARISLARAVYKPAQIYLMDDPLSAV
DAHVGRHLFDEVIGPRGRLAQLKATRILVTHQVHFLSEADVIVIVDQGRI
LRQGTYQELINSDLDFARLLERPKEEEEGENSRNQTSPLSVNSLESDDED
IPFIDGVKDGYQQLRKQSSSVHGSKSLDSTQLDDNVDEDDLAEAQASGGI
SPRVWYEYFHAGSTLLSFSFMVFVMVMSQVVCSSSDFFANIWTQQEHQRS
QGEATFSTFECMYIYGALIIAVVIMTTFRGFLFFKICMHASKVLHDRMFA
CILHATMRFFDTTPSGRILNRFSKDMGAIDELLPRAMMDFIQIALVMFGI
LIVIGILNPVLVAAMLVVAVVDVLILKLYLRPSQDLKRLEGICRSPVFSH
LSASLTGLAIIRSRQLQDVVAKEFDLLQDVHSSVWQLTMAVNTTLGLWLD
CVSCIFLTSVTFSFIISSETTYSGNVGLAIAQAMILTGMVQYGVRQVAES
LQQMTSVERVLQYTELEQEPALGEKTPPQQWPTRGQVEFRNMSCRYDPNG
SPVLRNLNLTIEAGWKVGIVGRTGAGKSSLIGALFRLAHIEGEIFIDGIE
TGTISLEILRTRISIIPQDPVLFSATIRYNLDPFERYTDAELWSALEDVE
LRKAIPGLDYMVTERGGNFSVGQRQLLCLARAILRNNKVLVLDEATANVD
PQTDALIQRTIRIKFKQCTVLTVAHRLHTVMDSDRIIVMDAGVAVEFDVP
YLLLKKSQGHLRQMVEATGGESEALKKTASDSHKRMQRERDERDRDQDES
QEASFLDH
BO33364.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:55:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5789-PB | 1402 | CG5789-PB | 1..1402 | 1..1402 | 7132 | 100 | Plus |
| CG5789-PA | 1402 | CG5789-PA | 1..1402 | 1..1402 | 7132 | 100 | Plus |
| Mrp4-PB | 1316 | CG14709-PB | 124..1316 | 202..1392 | 2555 | 46.5 | Plus |
| CG4562-PE | 1408 | CG4562-PE | 138..1326 | 215..1379 | 2516 | 45.5 | Plus |
| CG4562-PC | 1362 | CG4562-PC | 138..1326 | 215..1379 | 2516 | 45.5 | Plus |
| CG4562-PE | 1408 | CG4562-PE | 11..102 | 10..101 | 175 | 38 | Plus |
