BO33365.complete Sequence
3085 bp assembled on 2012-10-01
GenBank Submission: KX799930
> BO33365.complete
GAAGTTATCAGTCGACATGATTATTTCCAAGGATCTTTTCATATTTGGCG
AACAAATTTTTGCAACAATCATACCAGAAGGTGGAGCCGCGGCGCTGGCA
ACCCAGCAGCAACATCAGCAGCAGCATCAGCAGCAGCATCAGCAGTCGCA
TCAGCAGCCGCATCAGCAGTCGCAGCAGCAGCAGCAGCAACAACAGCCGG
CAATTATAAATTCAACAACGACGACGGCCACTTCGTTGGTAATAAACTCG
ACAGCAGGAGCAGCTGAACAAGTTGTAGAGGAGTCATTAAAAGTAGCAGC
AGCAGCAGCAGCAGCAACAACAACAACAACAGCCGCAGCAGCAACAACAC
TACCAGCTAAACAGGAAACAGTTGCAGTTGCTGCCGCCTGTGTTGCTCCT
CGCAAATTGGCAAAAATTCAGAAAATTCCAAAGGAACCCGAGGAGCTCAA
AGCCAAGAAAAAGGCAAAGTGTGAGGCAGCAGCAGCGGCGACTCATTACG
AAAAAATGCCAATGAATTTGATGATCGTGGAAAGTGTTGAGGCAGTCGAT
ATGGGATCATCGGACAATGACAACGAGACAACGGAGCAGGTACCGTTGGT
GAGTGCCAGCCGTCGCAATCTGGCCAAAATAGTGGCCGACTGCCGCCTCC
AGATCGAAGTGGAGCCGGCAACATCGGCAGTGGCCGCAGCAGCAGCAGCA
GCAGCAAGCGTTGCATCCCCGCCTGCAACATCGGATGCGACAGCAGCGAC
ATCGGTGGCCAGCAGCGACTCCTCTGCCTCATCATCAGCATCTTCGACGT
CGTCGTCATCTTCCAGCTCAACGTCCTCAGAATTTACGCACACATCACAG
ACAACGATACCAAGTACGGATAATCTAACGTCATCCAATGGTCTGGCCAA
TATAGGCAAAAGCATTTTAGTTGATGCCAAAAGTAACTCCCCAGCTTCCT
TGTCTTACCACTTTGAGAAGTCTGCGGCGGCGAACCAACAGAAGCAGCAT
CACAACATAAACATCTGCAACAGCCACCACCCACATCACCACTCCCAGAA
TCAGCCCCAGCACAGTTTGCAGCTGACCTTCCAGAACCTGAACGTTTTGC
ACAACGAACGCCAAATACTTTCCGATGTGAGTGGATTCGTCAGTCCCTGC
GAGGTCCTGGCCATCATGGGTCCTTCGGGCAGCGGGAAGACCACTCTGCT
GGACTGCCTCAGTGGTCAGCGGCACATTGACAGCGGCAGTGTGTTCCTCA
ACCGTGAGCCCCTGACCAAAAAGTGGCGTCGAAGGATCGGCTATGTCCTC
CAGGAGGAGATCTTCTTCCCGCAATTGACGCTCCGCGAAACGGTGGTCTA
TACTGCGCTGCTGCGACTGCCGGAATCAATGCCGCGGGCGGAGAAGATGC
GCCAGGTGGACCACATACTGGAGGCTCTGGAATTGGGTTGCTGTCAGCAG
ACCAAGTTCGGGGACTACCTCAACCGTGGACTCTCCGGTGGCGAGAAGAA
GCGGGCGAATATCGCCTGTGAACTGCTGACCAATCCGCTGCTCATGCTCC
TGGATGAACCCACTTCTGGACTGGACAGCCACTCGGCCATTTCGCTGATG
AAAGTACTCAAGCGGTACGCCCAGCTGGAGCAGAAGACCATCGTGATCAG
CGTGCACCAGCCTTCGTCCCAGATGTTCCACATGTTCGACAAGCTGCTTC
TGCTCCACCAAGGACGCACTGCGTACTTTGGGGACGTGCAAAACATCTAC
CGCCACTTCGAGGACATCGGGGTCACCATCAAGCCGCACTACAATCCCGC
CGATTTTGTGTTGGAGCAACTGAAATCGCATCCGGATATCCGCGAGAAAC
TCTTCATAGCCGCCAAGGAATCGCACGGCAACTATCTGAACCGCAACTGC
ATCACGAGTAGCCACCATAACCAGGTCAGCGTTTCGGGTGCGAAGGGCAA
GAAGCAAGCGGATAGCATCCTGATCGACGACATAATAAATAACTATTACA
ATCAACGCTCCAACCGGCACCATCACCAGTACGAGAACCTGCACCACACG
AGCAACGGCTGCCGGGTGGAGGAGGACGAGGAGGCGGCCCAGCACCTGGT
GTGGTGTGCCGCGGACTCGCAGTCCAACTTCAGTTCCTGCGCCTCCAGCG
ATTGTCATTCCTATAGTGCTGGCAGTGGGCCAGGACATTCGGCGGATGAC
GACTGGCTGTCCTATCCCACCAGCTTCCACACCCAGTTCTGCGTCCTCTC
AAGTCGCAATTTCCGGGAGGCTAAGCCGCGCATGCTGTCCAAACTCAATT
GGTTCCAAACTATCGGACTGGCTCTGATGGCCGGTGCCATTTGGTTCCAG
CTGCCCAGAACCGAGGAGTTCCTGCACGACCTCCAGGGATGGATGTTCTT
CTCGCAGACCTACTGGATGCTCTTCGCCCTCTTCGGGGCCCTTAATTCAT
TCCCCTCGGAGCGCGAGGTGGTGAGCAAGGAACGTCGCTCCGGGGCCTAC
CGACTATCCGCCTATTATTTGGCCAAAATGTGTGCCGAGCTGCCCTTGGT
GATCACTTTGCCCACGGTCTACCTCATGATCAGCTACCCCATGCTGGGCT
GCACCAGCTTGAAGCTATTCTTCCTGATGCTCATCTTTCTGCTGATCAAC
ACGATCGTGGCCCAGAGCGTGGGCTTCTTCATCGGAGCCTGCTGCATGGA
CATGAACGTGAGCATCACCCTGAGTGCCCTGTACACGCTGGCCACCCAGC
TGTTCGGCGGATATCTGTCTTCGCGCATTCCGGAGGGGCTCAGCTGGATC
CGGTACACCTCCATGATCCACTACGCCTACCAGAACATGCAGATTCTCGA
GTTCCGCGAGGGGGCGGCTATTGGTTGTGGCTCGCCCAGCAGTTACGAGA
TTTGCAAACAGCAATCAACCGAATTCATTCCATACGAGGAAATACTCAAA
GCCCAAAACTCGACATCACCGCTCTGGCTGAACACGCTGATCCTGATGAT
GTTCTTCCTGGTATTCCGGTGCCTGGGATACGCGGTGTTGCGCTTCCTGC
GATGCCCCAAAAAGACGGCAAGCTTTCTAGACCAT
BO33365.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:29:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E23-RE | 3054 | CG3327-PE | 1..3051 | 17..3067 | 15255 | 100 | Plus |
E23-RD | 3054 | CG3327-PD | 1..3051 | 17..3067 | 15255 | 100 | Plus |
E23-RC | 3054 | CG3327-PC | 1..3051 | 17..3067 | 15255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:29:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E23-RE | 5149 | CG3327-RE | 1314..4364 | 17..3067 | 15255 | 100 | Plus |
E23-RD | 4397 | CG3327-RD | 562..3612 | 17..3067 | 15255 | 100 | Plus |
E23-RC | 4514 | CG3327-RC | 679..3729 | 17..3067 | 15255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:29:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 3352476..3353392 | 933..17 | 4585 | 100 | Minus |
2L | 23513712 | 2L | 3336461..3337099 | 2450..1812 | 3195 | 100 | Minus |
2L | 23513712 | 2L | 3337482..3337896 | 1556..1142 | 2075 | 100 | Minus |
2L | 23513712 | 2L | 3335914..3336183 | 2874..2605 | 1350 | 100 | Minus |
2L | 23513712 | 2L | 3337163..3337418 | 1811..1556 | 1280 | 100 | Minus |
2L | 23513712 | 2L | 3338227..3338438 | 1143..932 | 1060 | 100 | Minus |
2L | 23513712 | 2L | 3335660..3335853 | 3067..2874 | 970 | 100 | Minus |
2L | 23513712 | 2L | 3336242..3336398 | 2607..2451 | 785 | 100 | Minus |
2L | 23513712 | 2L | 1135003..1135076 | 128..201 | 190 | 83.8 | Plus |
Blast to na_te.dros performed 2014-11-28 12:29:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2472..2535 | 669..732 | 122 | 65.6 | Plus |
BO33365.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-01 14:45:23 Download gff for
BO33365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E23-RC | 850..3900 | 17..3069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:36 Download gff for
BO33365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E23-RC | 679..3729 | 17..3069 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:05:27 Download gff for
BO33365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
E23-RC | 679..3729 | 17..3069 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:05:27 Download gff for
BO33365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 3352476..3353392 | 17..933 | 100 | | Minus |
2L | 3338227..3338436 | 934..1143 | 100 | <- | Minus |
2L | 3335657..3335852 | 2875..3069 | 98 | <- | Minus |
2L | 3335914..3336180 | 2608..2874 | 100 | <- | Minus |
2L | 3336242..3336398 | 2451..2607 | 100 | <- | Minus |
2L | 3336461..3337099 | 1812..2450 | 100 | <- | Minus |
2L | 3337163..3337418 | 1556..1811 | 100 | <- | Minus |
2L | 3337483..3337894 | 1144..1555 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:36 Download gff for
BO33365.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 3335657..3335852 | 2875..3069 | 98 | <- | Minus |
arm_2L | 3335914..3336180 | 2608..2874 | 100 | <- | Minus |
arm_2L | 3336242..3336398 | 2451..2607 | 100 | <- | Minus |
arm_2L | 3336461..3337099 | 1812..2450 | 100 | <- | Minus |
arm_2L | 3337163..3337418 | 1556..1811 | 100 | <- | Minus |
arm_2L | 3337483..3337894 | 1144..1555 | 100 | <- | Minus |
arm_2L | 3338227..3338436 | 934..1143 | 100 | <- | Minus |
arm_2L | 3352476..3353392 | 17..933 | 100 | | Minus |
BO33365.pep Sequence
Translation from 16 to 3085
> BO33365.pep
MIISKDLFIFGEQIFATIIPEGGAAALATQQQHQQQHQQQHQQSHQQPHQ
QSQQQQQQQQPAIINSTTTTATSLVINSTAGAAEQVVEESLKVAAAAAAA
TTTTTAAAATTLPAKQETVAVAAACVAPRKLAKIQKIPKEPEELKAKKKA
KCEAAAAATHYEKMPMNLMIVESVEAVDMGSSDNDNETTEQVPLVSASRR
NLAKIVADCRLQIEVEPATSAVAAAAAAAASVASPPATSDATAATSVASS
DSSASSSASSTSSSSSSSTSSEFTHTSQTTIPSTDNLTSSNGLANIGKSI
LVDAKSNSPASLSYHFEKSAAANQQKQHHNINICNSHHPHHHSQNQPQHS
LQLTFQNLNVLHNERQILSDVSGFVSPCEVLAIMGPSGSGKTTLLDCLSG
QRHIDSGSVFLNREPLTKKWRRRIGYVLQEEIFFPQLTLRETVVYTALLR
LPESMPRAEKMRQVDHILEALELGCCQQTKFGDYLNRGLSGGEKKRANIA
CELLTNPLLMLLDEPTSGLDSHSAISLMKVLKRYAQLEQKTIVISVHQPS
SQMFHMFDKLLLLHQGRTAYFGDVQNIYRHFEDIGVTIKPHYNPADFVLE
QLKSHPDIREKLFIAAKESHGNYLNRNCITSSHHNQVSVSGAKGKKQADS
ILIDDIINNYYNQRSNRHHHQYENLHHTSNGCRVEEDEEAAQHLVWCAAD
SQSNFSSCASSDCHSYSAGSGPGHSADDDWLSYPTSFHTQFCVLSSRNFR
EAKPRMLSKLNWFQTIGLALMAGAIWFQLPRTEEFLHDLQGWMFFSQTYW
MLFALFGALNSFPSEREVVSKERRSGAYRLSAYYLAKMCAELPLVITLPT
VYLMISYPMLGCTSLKLFFLMLIFLLINTIVAQSVGFFIGACCMDMNVSI
TLSALYTLATQLFGGYLSSRIPEGLSWIRYTSMIHYAYQNMQILEFREGA
AIGCGSPSSYEICKQQSTEFIPYEEILKAQNSTSPLWLNTLILMMFFLVF
RCLGYAVLRFLRCPKKTASFLDH
BO33365.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:54:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
E23-PE | 1017 | CG3327-PE | 1..1017 | 1..1017 | 5236 | 100 | Plus |
E23-PD | 1017 | CG3327-PD | 1..1017 | 1..1017 | 5236 | 100 | Plus |
E23-PC | 1017 | CG3327-PC | 1..1017 | 1..1017 | 5236 | 100 | Plus |
Atet-PD | 832 | CG2969-PD | 4..826 | 211..1010 | 676 | 26 | Plus |
Atet-PB | 832 | CG2969-PB | 4..826 | 211..1010 | 676 | 26 | Plus |