BO33367.complete Sequence
2809 bp assembled on 2013-01-22
GenBank Submission: KX796222
> BO33367.complete
GAAGTTATCAGTCGACATGGAAATTTTTTGCTTATTTATAGTCATACAAA
AGCGCAGAACCCCGGTGTGTCAATTTGCGTCGCCGCTGGACGTTGATATA
CATAGTAATCCTCAAACTGTTGTTCTTGAAGGCAAATACTGGAAACGGCA
CTCAGCTGTTATAAAAGCCGAATACAGGAAATGGCGCAGGAACTATAGGT
CGAAGGCTACGGGCTGCTTAACATATGATTCGAAAAGCGAATTAGACTTT
TTGGAATGGTCGCCTCTGAACGATAGGAACTTAATGCCAGACGATTGGAC
CACAGACACCTTATTCTCGGCTATAAACGTTCCATTCCCATTTCCAGATT
CTAGGGAAATCGCACGCGGCGCGGGCATCGCGGACTTTATACAGCCCAGT
CTTGGTCCCTTGCAACCGAATTTAGATGACATCGACATTAGCTTTTCAGA
CTTGATTCCAACCACACGCTTGCCTCCAGTTCCAGAAGAGGGAACCGACG
CTGAAATGCTCAAAAACGACGAATATTGCCTGTCAGCGATTGTCGGTGCT
CCTCATACGCTGTATTGCAACGATAGCATAATGGATGTGGTAAACAGCAG
TAACAATGGCGCTGTAAATGTAGATGCTAGCATGCTTGAGCTTAACACGC
CCATAAATAACGTATCGTACGGTGAGGTAGAGCAACGATTTTCTGTTGCA
CGGCAGGTGCAGCAATCCAACAATGATTCTCAGCTTCTCGGAGACTCGGG
TTCAATGTCCGGACGAATACACGGAGGCAAGCATTTTGGACCTGCTAGCG
CAAACGACAACAACACCAATAGGTGTGTTATAAACGGTCGCGTGGCCAAG
AGCACTCAGCGGCCATTCCGACGCGAGCCCCACAATTATGACAAGGCCCA
GCCCACAATGCACCAGACGAACCTGTATCAGCAAATGTTGGCCGAACAAC
AGAAGAACCAGCAGCAGCAACACGTGGTAGTGTCTTCATTTCAGGCTTCC
CAACAACAGCAGCTCGCTCAACAGCAACCCTTTTCGGCCCAGGCAACAAA
CGCCTTCAATAATCAGAGTTTTATTAGCAGTTACGCAGATAACTATCAGC
ATCAGCAGCAACTCAACGTCAAGGTAGAACCTCTACATGCCGATGTGCTG
TCATTACTAAACGACAATGCATACAACTCTATTGGCTACAAGCCCTATCC
GCAATTTAAGAAGTCCGCCTCGACGGGAACTTTTCTTAATGTCCCCAGGC
AGACGCAGCAGCAGCAAAGTTATCTGCAGCAAGAGCCCCCGCAAATGCAA
CAGTCCCTTCCCGTAGGCATGGGAAATCAACAAATTTTGCAGCTTACGCG
TCAGCAGCAGGTTAACAATACACAGCAACAGCAGCACCAATCCACAGTGG
CTAGCTTGTTGCAGCAGCAGCACCAGCAGCAAAACCATCAGCAACAGCAA
CTACAGACTGCTGTCAGCTCAGCCACATGGGTTTCGCCAAACACCATTTT
GCCTAAAGAAATCTACCGCTCCAACAGCTTACCACTGAATGTTTCCCTTA
ATAAACTACCCGATGGTCGCCAGCTGCATCATGAGCAGCCCTTCGCAGTG
CCCAAGTATCACTCCAAAAGCAAGTCGAGGGTGCGGAGTAATTCGATGCA
CCAGCAACACACTTCAGTGGTGTCTGCTGCTGGAGCGGGAAGTTCTTCAT
TAGGCGCACATAGTTGCAGCAACCTGCTGGTCACTCAGCAAATGCAGCAG
GCAACCAGCGATCCCATGCTAAACAGCACCCTGGCTCAACTGCTCACTTC
GAATTCACGCCTACAAACAGCAGTGGCGAACAGTTCGTCATCAAATTCAC
CTTCCGTCAGTGCCATAGCCACCACTAACAGCAACAGCAATGCGCCTCCG
GTTCATTACGCTAACGTCACATCGCCGTTGTCGGTTCCGGTGCCAACACA
TCAACACTCACCAAAAAAGTCCGCCTCCTTGCCTATGGCTGTCAACTCTG
CATTGCACAGTCCCCCTCTAGGAAGTAAAATACACGGTATTGGGCTGGCC
ACAGCTAACGTGGGCAGTAATAGCTTGAGTTTGTCACCGGAATCGACGTT
CCACGAGTCACAGGATTCCCCACTGTCTCCTACAACCAGCCTAAAATTCC
AGCCGCGAGACACGCAGCGTCGTGCTGGCCATATCCACGCCGAGCAGAAG
CGGCGTTACAACATAAAGAACGGATTTGACACTCTGCACGCGCTCATACC
ACAGCTTCAGCTAAATCCCAACGCCAAGTTAAGTAAGGCAGCCATGCTAC
AAAAGGGAGCGGACCACATAAAGCAACTGCGACAGGAGCGCAATGTTTTA
AAGGATAAAATTGAAGCTTTGCGCATGGAGCGAGACGAGCTAAACAATTC
GCTGACGCACCTTCACTCAATTTTGCCAGCTAATGGAGCGCCTGTAACGA
GGCAGGGTACAGAACATGTTCGGCAGCTTTACGACATTTATGTACGATAC
AATACAATGAACGACTGGAAATTTTGGATTTTGGGTCTCATTCTGGAACC
TTTGCTTGCCTCTTACACGTCAACAGTCTCGAGTGCTAGTCTTGATGAGC
TACGTCGGACCGCTTTTCTTTGGGTTGATCAGCACTGTTCCCTTATTGAT
CTTCGTCCAGCTGTTACAAATAAATTAAAGTATCTATCTATGCATACGGA
TATTGTTTCGGAGCCACCAAGTACATTGCAAGAGGAGGTGGCCAAAGCCC
TCCAGAATTCAAGTGGCCAGCATCCAAATCTGCATGGACCCGCAAGCTTT
CTAGACCAT
BO33367.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:11:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mio-RE | 2778 | CG18362-PE | 1..2775 | 17..2791 | 13875 | 100 | Plus |
| Mio-RM | 3360 | CG18362-PM | 608..3357 | 42..2791 | 13750 | 100 | Plus |
| Mio-RL | 3360 | CG18362-PL | 608..3357 | 42..2791 | 13750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:11:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mio-RE | 3300 | CG18362-RE | 309..3083 | 17..2791 | 13875 | 100 | Plus |
| Mio-RM | 4068 | CG18362-RM | 1102..3851 | 42..2791 | 13750 | 100 | Plus |
| Mio-RL | 3832 | CG18362-RL | 866..3615 | 42..2791 | 13750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:11:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21288052..21289411 | 1802..443 | 6785 | 99.9 | Minus |
| 2L | 23513712 | 2L | 21287390..21287994 | 2407..1803 | 3025 | 100 | Minus |
| 2L | 23513712 | 2L | 21286295..21286427 | 2791..2659 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 21289615..21289745 | 362..232 | 655 | 100 | Minus |
| 2L | 23513712 | 2L | 21286489..21286618 | 2660..2531 | 650 | 100 | Minus |
| 2L | 23513712 | 2L | 21287204..21287327 | 2530..2407 | 620 | 100 | Minus |
| 2L | 23513712 | 2L | 21297695..21297811 | 232..116 | 585 | 100 | Minus |
| 2L | 23513712 | 2L | 21289462..21289549 | 449..362 | 440 | 100 | Minus |
| 2L | 23513712 | 2L | 21301454..21301529 | 115..40 | 380 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 13:11:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2348..2546 | 1249..1453 | 245 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2824 | 908..1477 | 223 | 56.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6961 | 1256..1465 | 203 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2578..2647 | 900..972 | 150 | 71.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6864 | 899..1026 | 135 | 58.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1186 | 910..1037 | 134 | 59.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1076..1149 | 903..972 | 125 | 68.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6920 | 910..1112 | 119 | 54.7 | Plus |
BO33367.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-22 18:21:54 Download gff for
BO33367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mio-RE | 309..3083 | 17..2793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:00:54 Download gff for
BO33367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mio-RE | 309..3083 | 17..2793 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:23:01 Download gff for
BO33367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mio-RE | 309..3083 | 17..2793 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:23:01 Download gff for
BO33367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21286293..21286425 | 2661..2793 | 98 | <- | Minus |
| 2L | 21286489..21286618 | 2531..2660 | 100 | <- | Minus |
| 2L | 21287204..21287327 | 2407..2530 | 100 | <- | Minus |
| 2L | 21287391..21287994 | 1803..2406 | 100 | <- | Minus |
| 2L | 21288052..21289404 | 450..1802 | 100 | <- | Minus |
| 2L | 21289462..21289548 | 363..449 | 100 | <- | Minus |
| 2L | 21289615..21289744 | 233..362 | 100 | <- | Minus |
| 2L | 21297695..21297811 | 116..232 | 100 | <- | Minus |
| 2L | 21301454..21301527 | 42..115 | 100 | <- | Minus |
| 2L | 21303777..21303801 | 17..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:00:54 Download gff for
BO33367.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21286293..21286425 | 2661..2793 | 98 | <- | Minus |
| arm_2L | 21286489..21286618 | 2531..2660 | 100 | <- | Minus |
| arm_2L | 21287204..21287327 | 2407..2530 | 100 | <- | Minus |
| arm_2L | 21287391..21287994 | 1803..2406 | 100 | <- | Minus |
| arm_2L | 21288052..21289404 | 450..1802 | 100 | <- | Minus |
| arm_2L | 21289462..21289548 | 363..449 | 100 | <- | Minus |
| arm_2L | 21289615..21289744 | 233..362 | 100 | <- | Minus |
| arm_2L | 21297695..21297811 | 116..232 | 100 | <- | Minus |
| arm_2L | 21301454..21301527 | 42..115 | 100 | <- | Minus |
| arm_2L | 21303777..21303801 | 17..41 | 100 | | Minus |
BO33367.pep Sequence
Translation from 16 to 2809
> BO33367.pep
MEIFCLFIVIQKRRTPVCQFASPLDVDIHSNPQTVVLEGKYWKRHSAVIK
AEYRKWRRNYRSKATGCLTYDSKSELDFLEWSPLNDRNLMPDDWTTDTLF
SAINVPFPFPDSREIARGAGIADFIQPSLGPLQPNLDDIDISFSDLIPTT
RLPPVPEEGTDAEMLKNDEYCLSAIVGAPHTLYCNDSIMDVVNSSNNGAV
NVDASMLELNTPINNVSYGEVEQRFSVARQVQQSNNDSQLLGDSGSMSGR
IHGGKHFGPASANDNNTNRCVINGRVAKSTQRPFRREPHNYDKAQPTMHQ
TNLYQQMLAEQQKNQQQQHVVVSSFQASQQQQLAQQQPFSAQATNAFNNQ
SFISSYADNYQHQQQLNVKVEPLHADVLSLLNDNAYNSIGYKPYPQFKKS
ASTGTFLNVPRQTQQQQSYLQQEPPQMQQSLPVGMGNQQILQLTRQQQVN
NTQQQQHQSTVASLLQQQHQQQNHQQQQLQTAVSSATWVSPNTILPKEIY
RSNSLPLNVSLNKLPDGRQLHHEQPFAVPKYHSKSKSRVRSNSMHQQHTS
VVSAAGAGSSSLGAHSCSNLLVTQQMQQATSDPMLNSTLAQLLTSNSRLQ
TAVANSSSSNSPSVSAIATTNSNSNAPPVHYANVTSPLSVPVPTHQHSPK
KSASLPMAVNSALHSPPLGSKIHGIGLATANVGSNSLSLSPESTFHESQD
SPLSPTTSLKFQPRDTQRRAGHIHAEQKRRYNIKNGFDTLHALIPQLQLN
PNAKLSKAAMLQKGADHIKQLRQERNVLKDKIEALRMERDELNNSLTHLH
SILPANGAPVTRQGTEHVRQLYDIYVRYNTMNDWKFWILGLILEPLLASY
TSTVSSASLDELRRTAFLWVDQHCSLIDLRPAVTNKLKYLSMHTDIVSEP
PSTLQEEVAKALQNSSGQHPNLHGPASFLDH
BO33367.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:05:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mio-PE | 925 | CG18362-PE | 1..925 | 1..925 | 4802 | 100 | Plus |
| Mio-PM | 1119 | CG18362-PM | 204..1119 | 10..925 | 4755 | 100 | Plus |
| Mio-PL | 1119 | CG18362-PL | 204..1119 | 10..925 | 4755 | 100 | Plus |
| Mio-PK | 1119 | CG18362-PK | 204..1119 | 10..925 | 4755 | 100 | Plus |
| Mio-PJ | 1119 | CG18362-PJ | 204..1119 | 10..925 | 4755 | 100 | Plus |
