BO33368.complete Sequence
2962 bp assembled on 2012-11-15
GenBank Submission: KX796058
> BO33368.complete
GAAGTTATCAGTCGACATGAGCAGCAGCTATAAGCCCCGCAGCAGCGACG
AGGCTCTCGCCGAGCAGTTTAGTTTAGCCCGTGCCGGAAGTGGCACCAAG
CCCCCGGCCACGCCCACCTACCGCCAGATATCCGGCGCCATGGCAACTCT
GCCGCGCCACGATAACAACCACAATCACAATGACAACTCTAGCCGCATAC
GCAGCGATTCCACAGCGACGTCGAGAACCTGCGTCTATATTGGCGGAGCG
CCCACGGGTGGCGGAAACGGAAATGAACAGATATCCGTGACCCTAGATCG
CCGACAGCCGCAGCGAATGTCCTGGCTGAATATGCGACGCGCCAAGGCCA
ACGAGACGGACCTGCCCACCGTCACGCCCTCACCACAAACCACTCGCAGC
TGCATCTCCACGGTGTCCAGTGTGGTGGACAGTGGTGGCGGTCGCACCAC
CGCCACTTCCGGTCGCATCAGCTCCAGCGGCATCGTCACCCTGAGCGACA
GCAACAACACACTAAGTGAGATCCAGGGCGGCTACCATGACATGGACCAC
GATGCGGTGTCCAAGAACTTCTCTATATCGGCTTCCGCACACAACATCAC
CACGGCCAGCAATGCCAAGCTCCTGCCCGCCGTTGAGGATGAGTCCAACA
AGCAGACGAAATGCTCGGTGTTCCGCGGGCTCGTGCTCTGTCTGTGCCTG
AACCTGAGCTATGCGAACGTGGTCCGCTTCCCACGCGAGTTGGACCGCTA
CGGGTCGGCGTACCTGGTTCCGTACGTGGTGTTGCTGTTTCTAGTCGGCC
TGCCCATGGTTCTGCTGGAGATCTCGGTGGGCCAGTTTCTGGGCCAGGGG
GCGGCGCACACCTGGCGCGCCTCGCCCATTTTCAAAGGAGCCTGCATGAT
CAGTCGCTTTGCCTCCTGGCTTTCGGCCATTTGGGTGTCCTTGCAGGCCG
TGCTGGCACTGGCCTACATCGGGATGTTCGCCTCCAATGACCTGCCATTC
CGGGAGTGCGCTGGACCCGTGAAGCTGCGATTGAGTGGATACCTCCTGAC
GGGAACCAGTGGACAAGAGTGTTTGCAGCTGACCTTTCTAACTCCATTCT
GGCGGAATCCTCTGTACTTTGGTCTTCTGGCAGCGGGACTTATAGGCCTT
TGGATAGTTGTAATGCTGTGCACACACAATGCCAAAATCCTGCGCCGCAG
TATATTCGTCTTCGGACTAGTTGGTCTAGTCCTGCTTTGCACACTCACTG
GTTGGGAGGTGCGAAACTCCTTCAGTCGTCACTACTTCCCGGAGCTGTGG
GGATTCGACTCTAATTTGCTGGCCGAAAGCAACATCTGGTTCAATGCCCT
GATGCAGGTTCTCTTCTCAGTGAATTGTGGCTTTGGAGCTCTGCCCATGA
TCACGGGCAAGTTCTTGTACAAAGGCGATGCTGTGAGAACCTCGGTGGTT
TATCTCTGCTTCAACCTGCTCATAAACGCCATTGCCGTAACCCTGTTCAT
GGTCCAGTTTGATTTGTCGTCAAATGGCTTTCAGAATATGGAGGAACTAA
AGCCCCTAACCGCCATCTACGATCGGGTATTGAATGGATCCCGGGAGGGC
GACAGTCACCTACTACAACATCTGGTCCCATCGCTTATCTACGCCCTAAT
AATCCTCTCGGCCATGGTCTCCATAACAGTGGCGGTGTACACCTCCACAC
GTCTTGTGCCACGACGCCCCAACTATGTGATCTGCTTGATTGGATTGGTG
GTGGCCGTTATTTCATTTGCGGCGCCCAAGTTTCTCATCGCCCGTGTGCT
GGACTCGCGATTGGTGGGCACCATGGTGGTGACTGCTTTGGTGTTTGAGC
TGATTGCCATAACTTGGATCTACGGAGCCAAGAACATCTACACCGACCTC
GAGTTCTCCATAGGTCGTCCCATTTTCCGAGTGTGGATGTGGCTGTGGGT
CATTTGTCCGGCCATACTAACAGGTATTCTGGTGTGGTGGTGTGCGGACG
ACGATCAGTACGACTTGCTGGCGGAGTATCTCCCACGTTGGGCGCCAATT
CTTTTTGTGCTGGCTGTCATCGTGATCATCGCCTGTGTGCAGATCTTCCG
GCAGGTAGAGTACAACTTCTTTGGCATGATCTGCGAGGCTTCAAAGCCTG
CAAAGGAGTGGGGTCCGGCGGATCCTTTGGCCCGACACTCATGGAAGCAG
TGGCGCTCCGTATGCCAGGACACAGGACGCAGGGACTTTACCCTGAGACG
AAGAGGTACTCGGGACTATACGCACTCTATCAAGAAGGGTCAGTACTCGA
GTGCGACGAAGTATGGAGTACAGAATGGAGGTCAAACCCAGACGCCTATG
CATCAGCAGCACTGGAAGTCATCAACGCCGGGAAATAGTTCTCCCAACTA
CAGCGGATCCATGTTTGGGGACTCAGCCATTGAAGAGGATATTAGTGTGG
ATAAATTCCCAGGAATCACGCAGCAGCAATACGTTCCCTTCCAGGCTAGT
GATACGAAGCAGTCGAGGTATTCACAAAGAATCCGGCAAACCGCCCAGCC
GCAGACCCAAACACAGATGCGACCGCCCAGGGAATCCGTGGAGAAACATC
GCGAGGTGGTCTACATTCGCCGCCTCTCCGATGGTGGAACTGGTACAGGT
CATGCCACGCGTATAGAGATATCGCCCTCAAACGAATCCATTACCTACGG
CAATGGCAAGAGCAACAATAACTACTCCTCGGCCATGTCCCGCAATCCGC
TGGGCCGCTCCACGGGATGTCTGGCCGCTCCGGCCCAGCCGCCGCCGCCC
AGCGTGCATGTCAAGCGGTCGGCCAGCTCGGTGGTCAATGTTAACTCACA
CAAGCTGCCACCTCCAGCGACGTCCGGTGGAGCGGCGGATCACATTTGCT
GGCGGAAGTTCAACGTCAATCCGGAAGAGTATTCCACGGAGCTGGCAAGC
TTTCTAGACCAT
BO33368.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:59:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blot-RB | 2931 | CG3897-PB | 1..2928 | 17..2944 | 14625 | 100 | Plus |
| blot-RD | 2931 | CG3897-PD | 1..2928 | 17..2944 | 14625 | 100 | Plus |
| blot-RE | 2430 | CG3897-PE | 139..2427 | 656..2944 | 11430 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:59:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blot-RB | 4054 | CG3897-RB | 601..3528 | 17..2944 | 14625 | 100 | Plus |
| blot-RD | 3624 | CG3897-RD | 171..3098 | 17..2944 | 14625 | 100 | Plus |
| blot-RE | 3089 | CG3897-RE | 275..2563 | 656..2944 | 11430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:59:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17396557..17398331 | 2944..1170 | 8860 | 99.9 | Minus |
| 3L | 28110227 | 3L | 17409225..17409863 | 655..17 | 3195 | 100 | Minus |
| 3L | 28110227 | 3L | 17401610..17401846 | 888..652 | 1185 | 100 | Minus |
| 3L | 28110227 | 3L | 17398587..17398734 | 1033..886 | 740 | 100 | Minus |
| 3L | 28110227 | 3L | 17398395..17398532 | 1170..1033 | 690 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:59:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2334..2398 | 445..509 | 118 | 64.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6850..6937 | 438..526 | 118 | 60.7 | Plus |
BO33368.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-11-15 12:01:29 Download gff for
BO33368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blot-RB | 551..3478 | 17..2946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:58:19 Download gff for
BO33368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blot-RD | 171..3098 | 17..2946 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:18:56 Download gff for
BO33368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| blot-RD | 171..3098 | 17..2946 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:18:56 Download gff for
BO33368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17396554..17398330 | 1171..2946 | 99 | <- | Minus |
| 3L | 17398395..17398531 | 1034..1170 | 100 | <- | Minus |
| 3L | 17398587..17398732 | 888..1033 | 100 | <- | Minus |
| 3L | 17401611..17401842 | 656..887 | 100 | <- | Minus |
| 3L | 17409225..17409863 | 17..655 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:58:19 Download gff for
BO33368.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17391687..17391832 | 888..1033 | 100 | <- | Minus |
| arm_3L | 17391495..17391631 | 1034..1170 | 100 | <- | Minus |
| arm_3L | 17389654..17391430 | 1171..2946 | 99 | <- | Minus |
| arm_3L | 17394711..17394942 | 656..887 | 100 | <- | Minus |
| arm_3L | 17402325..17402963 | 17..655 | 100 | | Minus |
BO33368.pep Sequence
Translation from 16 to 2962
> BO33368.pep
MSSSYKPRSSDEALAEQFSLARAGSGTKPPATPTYRQISGAMATLPRHDN
NHNHNDNSSRIRSDSTATSRTCVYIGGAPTGGGNGNEQISVTLDRRQPQR
MSWLNMRRAKANETDLPTVTPSPQTTRSCISTVSSVVDSGGGRTTATSGR
ISSSGIVTLSDSNNTLSEIQGGYHDMDHDAVSKNFSISASAHNITTASNA
KLLPAVEDESNKQTKCSVFRGLVLCLCLNLSYANVVRFPRELDRYGSAYL
VPYVVLLFLVGLPMVLLEISVGQFLGQGAAHTWRASPIFKGACMISRFAS
WLSAIWVSLQAVLALAYIGMFASNDLPFRECAGPVKLRLSGYLLTGTSGQ
ECLQLTFLTPFWRNPLYFGLLAAGLIGLWIVVMLCTHNAKILRRSIFVFG
LVGLVLLCTLTGWEVRNSFSRHYFPELWGFDSNLLAESNIWFNALMQVLF
SVNCGFGALPMITGKFLYKGDAVRTSVVYLCFNLLINAIAVTLFMVQFDL
SSNGFQNMEELKPLTAIYDRVLNGSREGDSHLLQHLVPSLIYALIILSAM
VSITVAVYTSTRLVPRRPNYVICLIGLVVAVISFAAPKFLIARVLDSRLV
GTMVVTALVFELIAITWIYGAKNIYTDLEFSIGRPIFRVWMWLWVICPAI
LTGILVWWCADDDQYDLLAEYLPRWAPILFVLAVIVIIACVQIFRQVEYN
FFGMICEASKPAKEWGPADPLARHSWKQWRSVCQDTGRRDFTLRRRGTRD
YTHSIKKGQYSSATKYGVQNGGQTQTPMHQQHWKSSTPGNSSPNYSGSMF
GDSAIEEDISVDKFPGITQQQYVPFQASDTKQSRYSQRIRQTAQPQTQTQ
MRPPRESVEKHREVVYIRRLSDGGTGTGHATRIEISPSNESITYGNGKSN
NNYSSAMSRNPLGRSTGCLAAPAQPPPPSVHVKRSASSVVNVNSHKLPPP
ATSGGAADHICWRKFNVNPEEYSTELASFLDH
BO33368.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:01:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| blot-PB | 976 | CG3897-PB | 1..976 | 1..976 | 5113 | 100 | Plus |
| blot-PD | 976 | CG3897-PD | 1..976 | 1..976 | 5113 | 100 | Plus |
| blot-PE | 809 | CG3897-PE | 45..809 | 212..976 | 4025 | 99.7 | Plus |
| blot-PC | 809 | CG3897-PC | 45..809 | 212..976 | 4025 | 99.7 | Plus |
| blot-PA | 769 | CG3897-PA | 7..769 | 214..976 | 4022 | 100 | Plus |
