BO33371.complete Sequence
3133 bp assembled on 2012-10-29
GenBank Submission: KX799486
> BO33371.complete
GAAGTTATCAGTCGACATGTCCGAATTTGTGCGGCAACATGGCGAGTATG
TGTGGGTGAAGCCGCAAAATACTACCAGCGAATTCGCAGTGCCCTTTGGG
GCTCGAATTGTGCGAACGGAGAAAACACAGACCCTAGTTTGCGATGACCG
GAACAAGCAGTTCTGGGTTCCAGCTGGGGATGTCCTGAAGGCAATGCATA
TCACCTCCCAGGAGGATGTTGAGGATATGATCACTTTGGGTGACTTACAG
GAGTACACTATACTGAGGAACCTGCAGAACAGATATGCCAAGCAATTAAT
ATATACCTACACAGGCTCCATGTTGGTGGCCATCAATCCGTACCAGATTC
TGCCTATCTACACGAATCGCGAGATACAGCTCTACAGAAATAAGTCCCTT
GCTGAACTACCTCCTCACATTTTCGCCATTAGTGACAATGCCTTTCAGAG
ACTACAAAGACTTAAGGAGAACCAGTGCGTGGTGATCAGCGGGGAGTCGG
GTGCCGGGAAGACGGAGAGCACCAAGCTGATCCTTCAGTATCTGGCCGCA
ATTAGTGGCAAACACTCGTGGATCGAGCAGCAAATCATAGAGGCCAATCC
TATTATGGAGGCCTTTGGCAATGCCAAGACTGTACGGAATGACAACTCTT
CAAGGTTCGGAAAGTACATCGAGATCAGATTCACGCCACAGGGCGCTATT
CAAGGAGCTAGAATCCAGCAGTATCTTCTGGAAAAATCCCGAATTGTTTT
CCAGAGTCGCGATGAGCGCAACTATCACATTTTCTACTGCATGTTGGCGG
GACTTTCAACTGCGGAGAGAGAGCGCCTAAAGCTACAGGAGCAATCGCCA
AGTCAGTATCATTACTTGGCCCAAGGAGGATGCTTTACTTTGCCAGGAAG
AGGTGATGCCAAGGATTTTGCCGATATTCGAGCGGCTATGAAAGTGCTTT
CATTTAAGCCGGAGGAAGTGTGGAGCATACTTAGTTTACTGGCGGCTATT
TTGCACTTGGGAAACCTCAGATTCACAGCCACCGAGGTTGCCAATTTGGC
TACGGCTGAGATAGACGATACACCAAATCTTCAGAGGGTGGCTCAATTAC
TGGGAATACCCATATCTGCTCTGAATGCTGCTCTTACGCAAAGAACCATC
TTTGTGCATGGTGAGCACGTGACCACCAGTTTGTCCAAGGAAGCGGCTAT
TGAGGGTCGAGATGCTTTTGTAAAATCGTTGTACGATGGAATTTTTGTGC
GCATCGTGCGAAGAATCAATGAGACTATAAACAAGCAAGTGGATCAGCCC
ATGAATAGCATAGGTGTTCTAGATATCTTCGGGTTCGAGAACTTCGACAA
TAATAGCTTTGAACAACTGTGCATCAACTATGCCAACGAAAATCTACAGC
AATTTTTCGTGGGACATATCTTCAAGATGGAACAGGATGAGTACCAGAAC
GAGCATATCAACTGGCAGCACATTGAGTTCCAGGATAATCAGCAAATCCT
CGATCTAATTGGCATGAAACCCATGAACTTGATGTCCCTCATCGACGAAG
AGTCCAAGTTTCCCAAGGGCACTGATCAAACTCTGCTCGAAAAGCTACAT
GTTCAGCATGGTAATCGATCCATTTACGTGAAAGGTAAAACCACCCAAAC
GTCTCTATTCGGAATCCGTCATTATGCCGGCGTCGTGATGTACAATCCAT
TGGGCTTTCTTGAAAAGAACAGGGATTCATTCAGCGGAGATCTTAGGACT
CTGGTGCAGCGATCAACAAATAAATATCTGGTGGACATATTCCCCCATGA
AATGCCCATGGATACGGCCAAGAAGCAGCCCACTTTGTGCGTGAAATTCA
GAAACTCTCTGGACATGCTGATGCGCACTTTGTCGCAGGCACATCCCTAC
TTTATCCGTTGCATCAAGCCCAATGAATACAAGGAACCTAAGAACTTTGA
CAAGGAGCTGTGCGTGCGGCAGTTGCGCTACTCAGGAATGATGGAGACGG
CTCGCATTCGAAGGGCTGGCTATCCGATCCGCCACGCCTACCGTGCCTTC
GTGGAGAGATATCGCCTCTTGGTGCCACCGGTGGGACCTTTGGAGCAATG
TGACTGCCGGAAGTTGGCGCGGCAGATCTGTGAAGTTGCCCTACCTGCCG
ATTCTGATCGTCAGTACGGAAAAACAAAGCTGTTCCTGCGGGACGAGGAC
GACGCTAGCCTGGAACTGCAGCGGTCCCAGCTGATGCTCAAGAGTATCGT
GACAATTCAGCGAGGAATCAGACGGGTCTTGTTCCGACGTTACATGAAGA
GATACCGCGAGGCCATTATTACGGTTCAGAGATATTGGCGAGGTCGCCTG
CAGCGTCGTAAGTACCAGGTTATGCGGCAGGGATTCCATCGCCTGGGAGC
CTGTATAGCTGCGCAGCAGTTGACCACCAAGTTCACGATGGTCAGGTGTC
GAACCATAAAACTGCAGGCCTTGAGTCGCGGGTATCTGGTACGCAAGGAC
TTCCAGAAAAAGTTGTTGGAGCGGCGAAAGCAGAACCAGCTGAAGAAGGA
GGAGTTACTTAAGTTGGCCAAGATGAAGGAAGCAGAGGAACTGCTAAGAC
TGCAGCAACTGAAGGAGCAGAAGGAGAGAGAACAAAGAGAACAGCAGGAA
AAACGATTGCAGGAGGAGCAGAGGCTCAAGGCCGAAGCAGCAGCCAGAAA
TGCATTGGCCATGGCTGCAGTGCAGCAGAAGAGGCGAACTAAGCCCGTCA
AGCAAGAGGCTCCAAAGGCTCCAACCCTGCAAGCACGCAACTCCCTGCCA
CCACCACCCACCACACTGATAGTAGCTGCCCCACTACCCACTCGACCGGC
CAGTGCCGTTACCAGAATTAATACCATACCCGAGAGTCCTGGCACCATTG
ATGTGGAGTCCTCCAAGCAAATGGTGGATGACGTGTTCCGCTTCCTAAAC
GATGAACCCGATGTGAGTGGTCCTCTGGGGCCGAATGTCAAAGAGAAGTC
TATGATGTTCGAGCAGGCATTGCGTCTGCGTAGAGATGTGCCCACCAAGC
TCCTTTCCCGCCCGGTCAACTATTACGAGGCGGCGCCTAGGAAGATTGTC
AACCAGACCCGCCTCGCAAGCTTTCTAGACCAT
BO33371.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 13:03:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myo28B1-RD | 3102 | CG6976-PD | 1..3099 | 17..3115 | 15495 | 100 | Plus |
| Myo28B1-RC | 3105 | CG6976-PC | 28..3102 | 41..3115 | 15375 | 100 | Plus |
| Myo28B1-RA | 6366 | CG6976-PA | 1..2947 | 17..2963 | 14735 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:03:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myo28B1-RD | 3912 | CG6976-RD | 178..3277 | 16..3115 | 15500 | 100 | Plus |
| Myo28B1-RC | 3767 | CG6976-RC | 58..3132 | 41..3115 | 15375 | 100 | Plus |
| Myo28B1-RA | 6588 | CG6976-RA | 178..3125 | 16..2963 | 14740 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 13:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7682728..7683902 | 1941..3115 | 5875 | 100 | Plus |
| 2L | 23513712 | 2L | 7680936..7682057 | 305..1426 | 5610 | 100 | Plus |
| 2L | 23513712 | 2L | 7682111..7682628 | 1425..1942 | 2590 | 100 | Plus |
| 2L | 23513712 | 2L | 7680604..7680871 | 37..304 | 1325 | 99.6 | Plus |
| 2L | 23513712 | 2L | 15051821..15051958 | 627..490 | 360 | 84.1 | Minus |
| 2L | 23513712 | 2L | 15050844..15051015 | 1480..1309 | 305 | 78.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 13:03:39 has no hits.
BO33371.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2013-01-07 15:39:43 Download gff for
BO33371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo28B1-RD | 161..3259 | 17..3117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:59:30 Download gff for
BO33371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo28B1-RD | 179..3277 | 17..3117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:20:28 Download gff for
BO33371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo28B1-RD | 179..3277 | 17..3117 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:20:28 Download gff for
BO33371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7678897..7678920 | 17..40 | 100 | -> | Plus |
| 2L | 7680608..7680871 | 41..304 | 100 | -> | Plus |
| 2L | 7680936..7682057 | 305..1426 | 100 | -> | Plus |
| 2L | 7682113..7682628 | 1427..1942 | 100 | -> | Plus |
| 2L | 7682730..7683902 | 1943..3117 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:59:30 Download gff for
BO33371.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7678897..7678920 | 17..40 | 100 | -> | Plus |
| arm_2L | 7680608..7680871 | 41..304 | 100 | -> | Plus |
| arm_2L | 7680936..7682057 | 305..1426 | 100 | -> | Plus |
| arm_2L | 7682113..7682628 | 1427..1942 | 100 | -> | Plus |
| arm_2L | 7682730..7683902 | 1943..3117 | 99 | | Plus |
BO33371.pep Sequence
Translation from 16 to 3133
> BO33371.pep
MSEFVRQHGEYVWVKPQNTTSEFAVPFGARIVRTEKTQTLVCDDRNKQFW
VPAGDVLKAMHITSQEDVEDMITLGDLQEYTILRNLQNRYAKQLIYTYTG
SMLVAINPYQILPIYTNREIQLYRNKSLAELPPHIFAISDNAFQRLQRLK
ENQCVVISGESGAGKTESTKLILQYLAAISGKHSWIEQQIIEANPIMEAF
GNAKTVRNDNSSRFGKYIEIRFTPQGAIQGARIQQYLLEKSRIVFQSRDE
RNYHIFYCMLAGLSTAERERLKLQEQSPSQYHYLAQGGCFTLPGRGDAKD
FADIRAAMKVLSFKPEEVWSILSLLAAILHLGNLRFTATEVANLATAEID
DTPNLQRVAQLLGIPISALNAALTQRTIFVHGEHVTTSLSKEAAIEGRDA
FVKSLYDGIFVRIVRRINETINKQVDQPMNSIGVLDIFGFENFDNNSFEQ
LCINYANENLQQFFVGHIFKMEQDEYQNEHINWQHIEFQDNQQILDLIGM
KPMNLMSLIDEESKFPKGTDQTLLEKLHVQHGNRSIYVKGKTTQTSLFGI
RHYAGVVMYNPLGFLEKNRDSFSGDLRTLVQRSTNKYLVDIFPHEMPMDT
AKKQPTLCVKFRNSLDMLMRTLSQAHPYFIRCIKPNEYKEPKNFDKELCV
RQLRYSGMMETARIRRAGYPIRHAYRAFVERYRLLVPPVGPLEQCDCRKL
ARQICEVALPADSDRQYGKTKLFLRDEDDASLELQRSQLMLKSIVTIQRG
IRRVLFRRYMKRYREAIITVQRYWRGRLQRRKYQVMRQGFHRLGACIAAQ
QLTTKFTMVRCRTIKLQALSRGYLVRKDFQKKLLERRKQNQLKKEELLKL
AKMKEAEELLRLQQLKEQKEREQREQQEKRLQEEQRLKAEAAARNALAMA
AVQQKRRTKPVKQEAPKAPTLQARNSLPPPPTTLIVAAPLPTRPASAVTR
INTIPESPGTIDVESSKQMVDDVFRFLNDEPDVSGPLGPNVKEKSMMFEQ
ALRLRRDVPTKLLSRPVNYYEAAPRKIVNQTRLASFLDH
BO33371.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myo28B1-PD | 1033 | CG6976-PD | 1..1033 | 1..1033 | 5305 | 100 | Plus |
| Myo28B1-PC | 1034 | CG6976-PC | 10..1034 | 9..1033 | 5263 | 100 | Plus |
| Myo28B1-PA | 2121 | CG6976-PA | 1..1018 | 1..1023 | 5053 | 96.7 | Plus |
| Myo28B1-PB | 2122 | CG6976-PB | 10..1019 | 9..1023 | 5011 | 96.7 | Plus |
| ck-PD | 2167 | CG7595-PD | 7..903 | 9..885 | 2502 | 55.4 | Plus |
