BO33372.complete Sequence
2185 bp assembled on 2012-10-03
GenBank Submission: KX796348
> BO33372.complete
GAAGTTATCAGTCGACATGGAAAGCAACGCATTTGGCAGCAGCCATTTGC
CGTCCCAAGCGCTCGTTGTCCTCTCGGAAGCCGCTTCCGGTCTGCACGAG
GCTCTACGTGGACAACGTCCGTTTCCATCGAGAGTAATCCCTTTCGATTT
CCCCCTCTTGCAGCTACCCGACGCCAAAGATCTGCACAATATGTCACTAG
TCGGCAACTACTTCAATCCGCACCTGCTGCTCAACCACGGGATGCTGGTG
GCCAACGGAGCGGCGGCGGCAGCGGCGGCGGCGGGAGCGGGACCGGCCAG
CTACTTTGCCAGTGACCGCTCGCCGCTGGGCAAGCCGTCGGTGCTGTCCA
ACTTCTCGCTGCCGTCGGCCTTCTCGCCGCCCAAGTACATCGGCATATCC
CTGGATCAGAATCTGTTCAATGGCAGCGAATCATTTCGCACGGATTCGGC
CAGCCCCACATGCACATCGCACGAATCCATGGAGGGATCACAGGATTACG
ATGCCGTTGAAAAGGGTGAAAGTCCGCGCAGCAATAATTCTCAGGATCCC
AGGGATTTGAGACATCTGCATAATGCGGGGAAGAGCCACCAGGCACTGGC
CACTTCCTCGTCGGCGTCCAGCTCCTCGTCCTCCTCCTGCTCCACCAGCA
ATCCCGCCATCAGCACGGCGACCAGCAGCGTTGCCGTTTCGATGGCCAGC
CACCTGGCCGCCTCCTCGCCGCACCATCACCCCCACACGCACGCCCACTC
GCACCCGCATCCGTTGGCCCATCCGCACGCCCATAGCCATCACCACGTGG
GCCACCATGTGGGGGCACCTCCGGTGTCCACGGCGGTGACGACGCACCAC
CACATGGCCCATCCCCATCCGCTGTCGCACCACCACGCCGCCCACCACGC
GGCCTTGGCCAGCTTGAGCATGGCGGGTCTGCGAGCAGTTCCCGGCGGAT
TGAGCCTGGTCAGTGGGCTGCAGGCGGCAGCTGCCGGCGGTGCTATTCCC
GAGATGTGCCCCGTTTGCGGACTGAAGCTGAGCGCCGAGGAGTGGCACAC
CCACTTCCTCACCGAACTGGACAGGCTCTACAAGCTGAGTGCGGGATTCG
AGAGGGCCAGTCTGCAGGCCACCTACATGTTTGCTCCTCCATGTCCCGCG
CAGGAGAACGCCATTCGCACCAGTCACAACCGCTGGGAGACCTTTCAGAG
AATACGTAACAATCGCCAGAACCGACTGAGACTCAAAGTGCGAAAGCGCA
AGTACGGCGAAATGTACATGATGGAGAGTCTTTACTGTAGCAGTTGTCCG
ATCTGCAAGAGGAAGTACGCCTTGGAGACGGGGAAGATTCCTCCGGAGGA
CGATGCCAAATCGCAGGAGGAGATCGAAACGGTGGATGTGGAGAGCTGCA
ACGACGAAGTGCCCGACTCAGGTTCGGAGCTGGCTACTCCGAGTTCTGGG
TCATCCGGCACGGTTATGCCGCCCTCCAGTATGCACAACAGCAACTCGCA
GCCGGGCAAGCTGGACGGGATTCTCTACCGGACGGGCTGTGTGCTCAGCC
AGAAGGATCCGCATCCCGACGAGCATGACGTGAGCACCAATGTGACAACG
GCGAGCAGCAGTAGTTGGCCGGGAGAAGCACCAACCCAGGCACATATCAG
TGTTAAAACCGTCAGCGAGCTGTCATCCACCACACACCACTACTACAACG
CGGACTCATGCGGCGTGGGCGTAAACGACACCAACAGCAGCAGCAGCACC
CACAACAACGGCGGTGGCAGCAACAAGGATCTGATGATGGACACGGCCTC
CTGCCAAAACGACAGCGACGAGGACGTGATTGTGGACGACGACGACACCG
TGAAGCTGACGAGCAAAATCAACTATGGCAAGATTCAGCGCCGCCAGGAC
GAGCAGAACGTCGGCAGCAGCAGATCCCTCGAGAACATCTCACCGGTGGA
GGAGCGACCGCGGTCGGAGCCGCAGGTGAGCAGCACCGAACCCGGACCCA
TGGACATATCTCACAACAACAACAATAACAACAACAACAACAACAACAAT
AGCAACAGTAATAACAACAACAATCCGTCGACGAAATACGCAGAGAGCAT
GGAGAACAGCCTGTCGCAGTTGTCGTCGATGGGCGTGCCGGGATTAACGC
AATTGGACACAAAGGCTGCAAGCTTTCTAGACCAT
BO33372.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:33:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tey-RA | 2154 | CG8780-PA | 1..2151 | 17..2167 | 10740 | 100 | Plus |
| tey-RB | 2469 | CG8780-PB | 1..2149 | 17..2165 | 10730 | 100 | Plus |
| tey-RC | 2382 | CG8780-PC | 118..2118 | 164..2164 | 9990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:33:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tey-RA | 2827 | CG8780-RA | 270..2420 | 17..2167 | 10740 | 100 | Plus |
| tey-RB | 3200 | CG8780-RB | 270..2418 | 17..2165 | 10730 | 100 | Plus |
| tey-RD | 2646 | CG8780-RD | 230..2232 | 162..2164 | 10000 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:33:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19653290..19653915 | 1189..564 | 3130 | 100 | Minus |
| 3L | 28110227 | 3L | 19652647..19652952 | 1652..1347 | 1515 | 99.7 | Minus |
| 3L | 28110227 | 3L | 19657096..19657371 | 409..134 | 1380 | 100 | Minus |
| 3L | 28110227 | 3L | 19652148..19652419 | 1923..1652 | 1360 | 100 | Minus |
| 3L | 28110227 | 3L | 19651470..19651714 | 2165..1921 | 1225 | 100 | Minus |
| 3L | 28110227 | 3L | 19653067..19653228 | 1349..1188 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 19656810..19656966 | 563..407 | 785 | 100 | Minus |
| 3L | 28110227 | 3L | 19663275..19663395 | 137..17 | 605 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:33:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2319..2659 | 1729..2072 | 244 | 56.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2616..2987 | 1726..2073 | 235 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6867..7198 | 1730..2073 | 212 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2368..2838 | 1604..2071 | 205 | 53.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6876 | 1726..2072 | 197 | 55.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6744..7091 | 1724..2071 | 173 | 54.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2716 | 1724..2110 | 168 | 53.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2436..2492 | 1720..1776 | 159 | 75.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2444..2494 | 1725..1775 | 156 | 78.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..7092 | 1729..2112 | 153 | 54.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2398..2450 | 1724..1776 | 148 | 75.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6765..6816 | 1724..1775 | 143 | 75 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1125..1188 | 1724..1788 | 133 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2666 | 1729..2043 | 128 | 54.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1066..1123 | 1719..1776 | 128 | 69 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1119..1157 | 1724..1762 | 123 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1530..1599 | 1711..1779 | 122 | 65.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6803..6849 | 1729..1775 | 118 | 72.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1488..1586 | 1666..1764 | 117 | 57.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1121..1165 | 1729..1773 | 117 | 73.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6786..6837 | 1724..1775 | 116 | 69.2 | Plus |
BO33372.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-10-03 11:04:59 Download gff for
BO33372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tey-RA | 269..2419 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:13 Download gff for
BO33372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tey-RA | 270..2420 | 17..2169 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 13:06:45 Download gff for
BO33372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tey-RA | 270..2420 | 17..2169 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 13:06:45 Download gff for
BO33372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19657096..19657371 | 134..409 | 100 | <- | Minus |
| 3L | 19663279..19663395 | 17..133 | 100 | | Minus |
| 3L | 19651467..19651711 | 1924..2169 | 99 | <- | Minus |
| 3L | 19652148..19652418 | 1653..1923 | 100 | <- | Minus |
| 3L | 19652647..19652950 | 1349..1652 | 99 | <- | Minus |
| 3L | 19653068..19653226 | 1190..1348 | 100 | <- | Minus |
| 3L | 19653290..19653915 | 564..1189 | 100 | <- | Minus |
| 3L | 19656810..19656963 | 410..563 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:13 Download gff for
BO33372.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19649910..19650063 | 410..563 | 100 | <- | Minus |
| arm_3L | 19646168..19646326 | 1190..1348 | 100 | <- | Minus |
| arm_3L | 19645747..19646050 | 1349..1652 | 99 | <- | Minus |
| arm_3L | 19644567..19644811 | 1924..2169 | 99 | <- | Minus |
| arm_3L | 19645248..19645518 | 1653..1923 | 100 | <- | Minus |
| arm_3L | 19646390..19647015 | 564..1189 | 100 | <- | Minus |
| arm_3L | 19650196..19650471 | 134..409 | 100 | <- | Minus |
| arm_3L | 19656379..19656495 | 17..133 | 100 | | Minus |
BO33372.pep Sequence
Translation from 16 to 2185
> BO33372.pep
MESNAFGSSHLPSQALVVLSEAASGLHEALRGQRPFPSRVIPFDFPLLQL
PDAKDLHNMSLVGNYFNPHLLLNHGMLVANGAAAAAAAAGAGPASYFASD
RSPLGKPSVLSNFSLPSAFSPPKYIGISLDQNLFNGSESFRTDSASPTCT
SHESMEGSQDYDAVEKGESPRSNNSQDPRDLRHLHNAGKSHQALATSSSA
SSSSSSSCSTSNPAISTATSSVAVSMASHLAASSPHHHPHTHAHSHPHPL
AHPHAHSHHHVGHHVGAPPVSTAVTTHHHMAHPHPLSHHHAAHHAALASL
SMAGLRAVPGGLSLVSGLQAAAAGGAIPEMCPVCGLKLSAEEWHTHFLTE
LDRLYKLSAGFERASLQATYMFAPPCPAQENAIRTSHNRWETFQRIRNNR
QNRLRLKVRKRKYGEMYMMESLYCSSCPICKRKYALETGKIPPEDDAKSQ
EEIETVDVESCNDEVPDSGSELATPSSGSSGTVMPPSSMHNSNSQPGKLD
GILYRTGCVLSQKDPHPDEHDVSTNVTTASSSSWPGEAPTQAHISVKTVS
ELSSTTHHYYNADSCGVGVNDTNSSSSTHNNGGGSNKDLMMDTASCQNDS
DEDVIVDDDDTVKLTSKINYGKIQRRQDEQNVGSSRSLENISPVEERPRS
EPQVSSTEPGPMDISHNNNNNNNNNNNNSNSNNNNNPSTKYAESMENSLS
QLSSMGVPGLTQLDTKAASFLDH
BO33372.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:55:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tey-PA | 717 | CG8780-PA | 1..717 | 1..717 | 3785 | 100 | Plus |
| tey-PB | 822 | CG8780-PB | 1..716 | 1..716 | 3781 | 100 | Plus |
| tey-PC | 793 | CG8780-PC | 1..706 | 1..716 | 3707 | 98.6 | Plus |
| tey-PD | 745 | CG8780-PD | 1..658 | 59..716 | 3484 | 100 | Plus |
| Vsx2-PB | 645 | CG33980-PB | 49..439 | 135..579 | 166 | 25.1 | Plus |
